ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 321 acgggataacgacggcgtctagaatctctggatgagatagaagtaatccttcaagctcag 380 |||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 2865658 acgggataacaacagcatctagaatctctggatgagatagaagtaacccttcaagctcgg 2865717 Query: 381 cangtgcaatct 392 || ||||||||| Sbjct: 2865718 caggtgcaatct 2865729 Score = 69.9 bits (35), Expect = 7e-09 Identities = 54/59 (91%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 391 ctggaaacctttgtacttaatcagctctttttagtctatcgacgacaaaaagctggcct 449 |||||||||||||||||||||||| || ||| |||||||| || ||||||||||||||| Sbjct: 2866459 ctggaaacctttgtacttaatcagttc-tttaagtctatcaacaacaaaaagctggcct 2866516 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 230 ataaatttttggacgtccacttcggttaatgaactggcaggtgacctcaccacataggca 289 |||||||||||||| || ||||| || ||||||||| ||||||||| || ||||||||| Sbjct: 2865429 ataaatttttggacatcaacttctgtcaatgaactgtcaggtgaccgaacaacataggca 2865488 Query: 290 ataggaacttcccca 304 || ||||| |||||| Sbjct: 2865489 atgggaacctcccca 2865503 Score = 44.1 bits (22), Expect = 0.39 Identities = 62/76 (81%) Strand = Plus / Plus Query: 140 cttctcaagatcttgcctgcngctgattttggcacgctctccacgaaggtaacccgnctc 199 ||||||| ||||| |||| |||||||| |||||||| |||| |||||||| | || Sbjct: 2864950 cttctcagaatctttcctgaagctgatttgggcacgctgcccacaaaggtaactctcttc 2865009 Query: 200 agtcttttgtagtacg 215 | |||||||||||||| Sbjct: 2865010 aatcttttgtagtacg 2865025
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 97.6 bits (49), Expect = 3e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 321 acgggataacgacggcgtctagaatctctggatgagatagaagtaatccttcaagctcag 380 |||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 3145 acgggataacaacagcatctagaatctctggatgagatagaagtaacccttcaagctcgg 3204 Query: 381 cangtgcaatct 392 || ||||||||| Sbjct: 3205 caggtgcaatct 3216 Score = 69.9 bits (35), Expect = 7e-09 Identities = 54/59 (91%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 391 ctggaaacctttgtacttaatcagctctttttagtctatcgacgacaaaaagctggcct 449 |||||||||||||||||||||||| || ||| |||||||| || ||||||||||||||| Sbjct: 3946 ctggaaacctttgtacttaatcagttc-tttaagtctatcaacaacaaaaagctggcct 4003 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 230 ataaatttttggacgtccacttcggttaatgaactggcaggtgacctcaccacataggca 289 |||||||||||||| || ||||| || ||||||||| ||||||||| || ||||||||| Sbjct: 2916 ataaatttttggacatcaacttctgtcaatgaactgtcaggtgaccgaacaacataggca 2975 Query: 290 ataggaacttcccca 304 || ||||| |||||| Sbjct: 2976 atgggaacctcccca 2990 Score = 44.1 bits (22), Expect = 0.39 Identities = 62/76 (81%) Strand = Plus / Plus Query: 140 cttctcaagatcttgcctgcngctgattttggcacgctctccacgaaggtaacccgnctc 199 ||||||| ||||| |||| |||||||| |||||||| |||| |||||||| | || Sbjct: 2437 cttctcagaatctttcctgaagctgatttgggcacgctgcccacaaaggtaactctcttc 2496 Query: 200 agtcttttgtagtacg 215 | |||||||||||||| Sbjct: 2497 aatcttttgtagtacg 2512
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 3e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 321 acgggataacgacggcgtctagaatctctggatgagatagaagtaatccttcaagctcag 380 |||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 2865769 acgggataacaacagcatctagaatctctggatgagatagaagtaacccttcaagctcgg 2865828 Query: 381 cangtgcaatct 392 || ||||||||| Sbjct: 2865829 caggtgcaatct 2865840 Score = 69.9 bits (35), Expect = 7e-09 Identities = 54/59 (91%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 391 ctggaaacctttgtacttaatcagctctttttagtctatcgacgacaaaaagctggcct 449 |||||||||||||||||||||||| || ||| |||||||| || ||||||||||||||| Sbjct: 2866570 ctggaaacctttgtacttaatcagttc-tttaagtctatcaacaacaaaaagctggcct 2866627 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 230 ataaatttttggacgtccacttcggttaatgaactggcaggtgacctcaccacataggca 289 |||||||||||||| || ||||| || ||||||||| ||||||||| || ||||||||| Sbjct: 2865540 ataaatttttggacatcaacttctgtcaatgaactgtcaggtgaccgaacaacataggca 2865599 Query: 290 ataggaacttcccca 304 || ||||| |||||| Sbjct: 2865600 atgggaacctcccca 2865614 Score = 44.1 bits (22), Expect = 0.39 Identities = 62/76 (81%) Strand = Plus / Plus Query: 140 cttctcaagatcttgcctgcngctgattttggcacgctctccacgaaggtaacccgnctc 199 ||||||| ||||| |||| |||||||| |||||||| |||| |||||||| | || Sbjct: 2865061 cttctcagaatctttcctgaagctgatttgggcacgctgcccacaaaggtaactctcttc 2865120 Query: 200 agtcttttgtagtacg 215 | |||||||||||||| Sbjct: 2865121 aatcttttgtagtacg 2865136
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 97.6 bits (49), Expect = 3e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 321 acgggataacgacggcgtctagaatctctggatgagatagaagtaatccttcaagctcag 380 |||||||||| || || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 137614 acgggataacaacagcatctagaatctctggatgagatagaagtaacccttcaagctcgg 137673 Query: 381 cangtgcaatct 392 || ||||||||| Sbjct: 137674 caggtgcaatct 137685 Score = 69.9 bits (35), Expect = 7e-09 Identities = 54/59 (91%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 391 ctggaaacctttgtacttaatcagctctttttagtctatcgacgacaaaaagctggcct 449 |||||||||||||||||||||||| || ||| |||||||| || ||||||||||||||| Sbjct: 138415 ctggaaacctttgtacttaatcagttc-tttaagtctatcaacaacaaaaagctggcct 138472 Score = 69.9 bits (35), Expect = 7e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 230 ataaatttttggacgtccacttcggttaatgaactggcaggtgacctcaccacataggca 289 |||||||||||||| || ||||| || ||||||||| ||||||||| || ||||||||| Sbjct: 137385 ataaatttttggacatcaacttctgtcaatgaactgtcaggtgaccgaacaacataggca 137444 Query: 290 ataggaacttcccca 304 || ||||| |||||| Sbjct: 137445 atgggaacctcccca 137459 Score = 44.1 bits (22), Expect = 0.39 Identities = 62/76 (81%) Strand = Plus / Plus Query: 140 cttctcaagatcttgcctgcngctgattttggcacgctctccacgaaggtaacccgnctc 199 ||||||| ||||| |||| |||||||| |||||||| |||| |||||||| | || Sbjct: 136906 cttctcagaatctttcctgaagctgatttgggcacgctgcccacaaaggtaactctcttc 136965 Query: 200 agtcttttgtagtacg 215 | |||||||||||||| Sbjct: 136966 aatcttttgtagtacg 136981
>gb|BT013439.1| Lycopersicon esculentum clone 132080F, mRNA sequence Length = 1962 Score = 61.9 bits (31), Expect = 2e-06 Identities = 89/109 (81%) Strand = Plus / Minus Query: 312 catcanggaacgggataacgacggcgtctagaatctctggatgagatagaagtaatcctt 371 ||||| | ||||||||||| || || |||| || || |||||||| | ||||| |||| Sbjct: 1479 catcaggaaacgggataacaacagcatctaatatttcaggatgagaaacaagtagacctt 1420 Query: 372 caagctcagcangtgcaatctggaaacctttgtacttaatcagctcttt 420 ||||||| || |||||| ||| |||||||||||||| || |||||||| Sbjct: 1419 caagctctgctggtgcaacctgaaaacctttgtacttgatgagctcttt 1371
>ref|NM_116755.4| Arabidopsis thaliana 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase AT4G05160 mRNA, complete cds Length = 1861 Score = 54.0 bits (27), Expect = 4e-04 Identities = 95/119 (79%) Strand = Plus / Minus Query: 287 gcaataggaacttccccannttcatcatcanggaacgggataacgacggcgtctagaatc 346 ||||| |||||||| || ||| |||||| |||||||||||||||| || ||||| || Sbjct: 1520 gcaattggaacttcacctgcttcttcatcagggaacgggataacgacagcatctagtata 1461 Query: 347 tctggatgagatagaagtaatccttcaagctcagcangtgcaatctggaaacctttgta 405 || ||||| |||| ||| | ||||| || ||||| | |||| |||||| |||||||| Sbjct: 1460 tcaggatgtgatacaagaagaccttctagttcagctggagcaacctggaagcctttgta 1402
>gb|AY250839.1| Arabidopsis thaliana 4-coumarate-CoA ligase-like protein (At4g05160) mRNA, complete cds Length = 1635 Score = 54.0 bits (27), Expect = 4e-04 Identities = 95/119 (79%) Strand = Plus / Minus Query: 287 gcaataggaacttccccannttcatcatcanggaacgggataacgacggcgtctagaatc 346 ||||| |||||||| || ||| |||||| |||||||||||||||| || ||||| || Sbjct: 1454 gcaattggaacttcacctgcttcttcatcagggaacgggataacgacagcatctagtata 1395 Query: 347 tctggatgagatagaagtaatccttcaagctcagcangtgcaatctggaaacctttgta 405 || ||||| |||| ||| | ||||| || ||||| | |||| |||||| |||||||| Sbjct: 1394 tcaggatgtgatacaagaagaccttctagttcagctggagcaacctggaagcctttgta 1336
>gb|AY122950.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160) mRNA, complete cds Length = 1666 Score = 54.0 bits (27), Expect = 4e-04 Identities = 95/119 (79%) Strand = Plus / Minus Query: 287 gcaataggaacttccccannttcatcatcanggaacgggataacgacggcgtctagaatc 346 ||||| |||||||| || ||| |||||| |||||||||||||||| || ||||| || Sbjct: 1454 gcaattggaacttcacctgcttcttcatcagggaacgggataacgacagcatctagtata 1395 Query: 347 tctggatgagatagaagtaatccttcaagctcagcangtgcaatctggaaacctttgta 405 || ||||| |||| ||| | ||||| || ||||| | |||| |||||| |||||||| Sbjct: 1394 tcaggatgtgatacaagaagaccttctagttcagctggagcaacctggaagcctttgta 1336
>gb|AY091079.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160) mRNA, complete cds Length = 1788 Score = 54.0 bits (27), Expect = 4e-04 Identities = 95/119 (79%) Strand = Plus / Minus Query: 287 gcaataggaacttccccannttcatcatcanggaacgggataacgacggcgtctagaatc 346 ||||| |||||||| || ||| |||||| |||||||||||||||| || ||||| || Sbjct: 1496 gcaattggaacttcacctgcttcttcatcagggaacgggataacgacagcatctagtata 1437 Query: 347 tctggatgagatagaagtaatccttcaagctcagcangtgcaatctggaaacctttgta 405 || ||||| |||| ||| | ||||| || ||||| | |||| |||||| |||||||| Sbjct: 1436 tcaggatgtgatacaagaagaccttctagttcagctggagcaacctggaagcctttgta 1378
>emb|BX827081.1|CNS0A38R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1821 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/56 (83%) Strand = Plus / Minus Query: 287 gcaataggaacttccccannttcatcatcanggaacgggataacgacggcgtctag 342 ||||| |||||||| || ||| |||||| |||||||||||||||| || ||||| Sbjct: 1480 gcaattggaacttcacctgcttcttcatcagggaacgggataacgacagcatctag 1425
>gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coumarate:CoA ligase 2 (4CL2) mRNA, complete cds Length = 1922 Score = 44.1 bits (22), Expect = 0.39 Identities = 33/37 (89%) Strand = Plus / Minus Query: 369 cttcaagctcagcangtgcaatctggaaacctttgta 405 |||||||||||||| |||| | |||||||||||||| Sbjct: 1385 cttcaagctcagcaggtgctacttggaaacctttgta 1349
>dbj|D43773.1|TOB4CCAL Nicotiana tabacum mRNA for 4-coumarate:coenzyme A ligase, complete cds Length = 1888 Score = 44.1 bits (22), Expect = 0.39 Identities = 42/49 (85%) Strand = Plus / Minus Query: 369 cttcaagctcagcangtgcaatctggaaacctttgtacttaatcagctc 417 |||| ||||||||| |||||| || || |||||||| ||||||||||| Sbjct: 1392 cttcgagctcagcaggtgcaacttgaaatcctttgtatttaatcagctc 1344
>gb|AC010369.7| Homo sapiens chromosome 5 clone CTD-2048F20, complete sequence Length = 160459 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tctggaaacctttgtactta 409 |||||||||||||||||||| Sbjct: 113027 tctggaaacctttgtactta 113046
>emb|X89530.1|AMAVAIREP Apis mellifera carnica DNA for Ava I repeat Length = 547 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 acgatatcgaagcagatttt 101 |||||||||||||||||||| Sbjct: 522 acgatatcgaagcagatttt 503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,867,876 Number of Sequences: 3902068 Number of extensions: 2867876 Number of successful extensions: 47504 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47444 Number of HSP's gapped (non-prelim): 56 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
