Clone Information

BLAST Search Result

Clone Name	rbah62g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|X51608.1\|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase	484	e-134
2	emb\|X57952.1\|TAPRK T.aestivum PRK gene for ribulose-5-phosphate ...	484	e-134
3	ref\|XM_467296.1\| Oryza sativa (japonica cultivar-group), mRNA	90	4e-15
4	ref\|XM_507520.1\| PREDICTED Oryza sativa (japonica cultivar-group...	90	4e-15
5	ref\|XM_506922.2\| PREDICTED Oryza sativa (japonica cultivar-group...	90	4e-15
6	gb\|AF543191.1\| Oryza sativa (indica cultivar-group) phosphoribul...	90	4e-15
7	gb\|AF529237.2\| Oryza sativa (indica cultivar-group) phosphoribul...	90	4e-15
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	4e-15
9	dbj\|AP004778.3\| Oryza sativa (japonica cultivar-group) genomic D...	90	4e-15
10	dbj\|AK119485.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	4e-15
11	dbj\|AK099461.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	4e-15
12	dbj\|AK066164.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	4e-15
13	dbj\|AK104857.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	1e-12
14	gb\|AY106347.1\| Zea mays PCO092382 mRNA sequence	60	4e-06
15	emb\|X61749.1\|SMTBPA S.mytilis telomere-binding protein gene (alp...	46	0.060
16	gb\|AC105008.5\| Homo sapiens chromosome 8, clone CTD-2589E21, com...	46	0.060
17	gb\|AC104952.8\| Homo sapiens chromosome 8, clone RP11-141J23, com...	46	0.060
18	gb\|AC182752.1\| Gasterosteus aculeatus clone VMRC26-161K14, compl...	44	0.24
19	emb\|AL672195.9\| Mouse DNA sequence from clone RP23-468E16 on chr...	44	0.24
20	gb\|AC107447.5\| Rattus norvegicus 4 BAC CH230-46D21 (Children's H...	40	3.7
21	gb\|AC100378.10\| Mus musculus chromosome 10, clone RP23-130O4, co...	40	3.7
22	gb\|AC158582.2\| Mus musculus chromosome 7, clone RP24-173K12, com...	40	3.7
23	gb\|AC129012.4\| Mus musculus BAC clone RP24-545L10 from chromosom...	40	3.7
24	emb\|AJ245511.1\|MTR245511 Medicago truncatula partial mRNA for ub...	40	3.7
25	gb\|AC159886.2\| Mus musculus BAC clone RP24-397P9 from chromosome...	40	3.7
26	gb\|AC073358.14\| Homo sapiens 3 BAC RP11-501M7 (Roswell Park Canc...	40	3.7
27	emb\|BX908397.7\| Zebrafish DNA sequence from clone CH211-103F16 i...	40	3.7
28	gb\|AF067832.1\|AF067832 Stylonychia mytilus micronuclear alpha te...	40	3.7
29	gb\|AC114988.21\| Mus musculus chromosome 7, clone RP23-207N5, com...	40	3.7

>emb|X51608.1|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase
          Length = 1533

 Score =  484 bits (244), Expect = e-134
 Identities = 274/284 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgggagaagatgtacattgaaatgtgttaagaggagacataagagactctcatcatgga 60
            |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 1503 atgggagaagatgtacatcgaaatttgttaagaagagacataagagaccctcatcatgga 1444

                                                                        
Query: 61   gaggattttcgagaagttcaaaatgcaggttttcatgagttctgcagtgaactttctacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 gaggattttcgagaagttcaaaatgcaggttttcatgagttctgcagtgaactttctacc 1384

                                                                        
Query: 121  gtcttctagctgtaatatattcaaactagtcacaagaaacgtgaggatgctcattctcat 180
            |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||
Sbjct: 1383 gtcttctagctgtaatatattcaaactaggtacaagaaatgcgaggatgctcattctcat 1324

                                                                        
Query: 181  tgagttggtgatgaaatgattcatgaacttgaatttggggctcatcaaacttttgctgct 240
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1323 tgagttggtgatgaaatgattcgtgaacttgaatttggggctcatcaaacttttgctgct 1264

                                                        
Query: 241  tcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1263 tcagcaggaacgccggccctctcagcgatgatctgttcatagag 1220

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>emb|X57952.1|TAPRK T.aestivum PRK gene for ribulose-5-phosphate kinase
          Length = 2501

 Score =  484 bits (244), Expect = e-134
 Identities = 274/284 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgggagaagatgtacattgaaatgtgttaagaggagacataagagactctcatcatgga 60
            |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 2335 atgggagaagatgtacatcgaaatttgttaagaagagacataagagaccctcatcatgga 2276

                                                                        
Query: 61   gaggattttcgagaagttcaaaatgcaggttttcatgagttctgcagtgaactttctacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 gaggattttcgagaagttcaaaatgcaggttttcatgagttctgcagtgaactttctacc 2216

                                                                        
Query: 121  gtcttctagctgtaatatattcaaactagtcacaagaaacgtgaggatgctcattctcat 180
            |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||
Sbjct: 2215 gtcttctagctgtaatatattcaaactaggtacaagaaatgcgaggatgctcattctcat 2156

                                                                        
Query: 181  tgagttggtgatgaaatgattcatgaacttgaatttggggctcatcaaacttttgctgct 240
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tgagttggtgatgaaatgattcgtgaacttgaatttggggctcatcaaacttttgctgct 2096

                                                        
Query: 241  tcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2095 tcagcaggaacgccggccctctcagcgatgatctgttcatagag 2052

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>ref|XM_467296.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1494

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1341 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1282

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1281 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1222

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1221 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1172



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1454 agaagatgtacattgaaatgtgtcaagaagaga 1422

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>ref|XM_507520.1| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA
          Length = 1556

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1383 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1324

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1323 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1264

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1263 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1214



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1496 agaagatgtacattgaaatgtgtcaagaagaga 1464

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>ref|XM_506922.2| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA
          Length = 1626

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1475 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1416

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1415 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1356

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1355 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1306



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1588 agaagatgtacattgaaatgtgtcaagaagaga 1556

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>gb|AF543191.1| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor
            gene, complete cds
          Length = 2443

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 2269 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 2210

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 2209 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 2150

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 2149 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 2100



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 2382 agaagatgtacattgaaatgtgtcaagaagaga 2350

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>gb|AF529237.2| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1663

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1487 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1428

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1427 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1368

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1367 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1318



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1600 agaagatgtacattgaaatgtgtcaagaagaga 1568

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                            
Query: 122      tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
                ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 28722611 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 28722552

                                                                            
Query: 181      tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
                |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 28722551 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 28722492

                                                                  
Query: 235      gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
                || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 28722491 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 28722442



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 6        agaagatgtacattgaaatgtgttaagaggaga 38
                ||||||||||||||||||||||| |||| ||||
Sbjct: 28722724 agaagatgtacattgaaatgtgtcaagaagaga 28722692

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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                         
Query: 122   tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
             ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 39184 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 39125

                                                                         
Query: 181   tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
             |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 39124 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 39065

                                                               
Query: 235   gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
             || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 39064 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 39015



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 6     agaagatgtacattgaaatgtgttaagaggaga 38
             ||||||||||||||||||||||| |||| ||||
Sbjct: 39297 agaagatgtacattgaaatgtgtcaagaagaga 39265

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>dbj|AK119485.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C05, full
           insert sequence
          Length = 1480

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Plus

                                                                       
Query: 122 tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
           ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 116 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 175

                                                                       
Query: 181 tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
           |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 176 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 235

                                                             
Query: 235 gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
           || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 236 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 285



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 8  aagatgtacattgaaatgtgttaagaggaga 38
          ||||||||||||||||||||| |||| ||||
Sbjct: 5  aagatgtacattgaaatgtgtcaagaagaga 35

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>dbj|AK099461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023E19, full
            insert sequence
          Length = 1625

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1474 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1415

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1414 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1355

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1354 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1305



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1587 agaagatgtacattgaaatgtgtcaagaagaga 1555

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>dbj|AK066164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N04, full
            insert sequence
          Length = 1555

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 142/170 (83%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| |||||||| | |||||||| |||| ||||
Sbjct: 1382 tcttctagctgtaatatttccaaaactagttacaagaaatgcgaggatgcccattgtcat 1323

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1322 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1263

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1262 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1213



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1495 agaagatgtacattgaaatgtgtcaagaagaga 1463

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>dbj|AK104857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C08, full
            insert sequence
          Length = 1494

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 141/170 (82%), Gaps = 7/170 (4%)
 Strand = Plus / Minus

                                                                        
Query: 122  tcttctagctgtaatatattcaaa-ctagtcacaagaaacgtgaggatgctcattctcat 180
            ||||||||||||||||| | |||| ||||| ||||| || | |||||||| |||| ||||
Sbjct: 1341 tcttctagctgtaatatttccaaaactagttacaaggaatgcgaggatgcccattgtcat 1282

                                                                        
Query: 181  tga----gt-tggtgatgaaatgattcatgaact-tgaatttggggctcatcaaactttt 234
            |||    || ||||||||||  |||||| ||| | ||||| ||| |||||| ||||||||
Sbjct: 1281 tgatatggtatggtgatgaagagattcacgaaatatgaatgtggagctcattaaactttt 1222

                                                              
Query: 235  gctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            || ||||||| |||  | ||||||||||||||||| ||||| ||||||||
Sbjct: 1221 gccgcttcagtaggtgcaccggccctctcagcaataatctgctcatagag 1172



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 6    agaagatgtacattgaaatgtgttaagaggaga 38
            ||||||||||||||||||||||| |||| ||||
Sbjct: 1454 agaagatgtacattgaaatgtgtcaagaagaga 1422

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>gb|AY106347.1| Zea mays PCO092382 mRNA sequence
          Length = 1513

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 227  aaacttttgctgcttcagcaggaacgccggccctctcagcaatgatctgttcatagag 284
            |||||||||||||||| || || || || |||||||||||||  ||||||||||||||
Sbjct: 1261 aaacttttgctgcttccgctggtacaccagccctctcagcaacaatctgttcatagag 1204

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>emb|X61749.1|SMTBPA S.mytilis telomere-binding protein gene (alpha subunit) for Sty56V
          Length = 2141

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 194  aaatgattcatgaacttgaattt 216
            |||||||||||||||||||||||
Sbjct: 1862 aaatgattcatgaacttgaattt 1884

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>gb|AC105008.5| Homo sapiens chromosome 8, clone CTD-2589E21, complete sequence
          Length = 172661

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 191    atgaaatgattcatgaacttgaa 213
              |||||||||||||||||||||||
Sbjct: 160686 atgaaatgattcatgaacttgaa 160708

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>gb|AC104952.8| Homo sapiens chromosome 8, clone RP11-141J23, complete sequence
          Length = 190902

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 191   atgaaatgattcatgaacttgaa 213
             |||||||||||||||||||||||
Sbjct: 21533 atgaaatgattcatgaacttgaa 21555

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>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence
          Length = 162574

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 15    acattgaaatgtgttaagagga 36
             ||||||||||||||||||||||
Sbjct: 34618 acattgaaatgtgttaagagga 34597

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>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete
              sequence
          Length = 182503

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 90     ttttcatgagttctgcagtgaa 111
              ||||||||||||||||||||||
Sbjct: 129518 ttttcatgagttctgcagtgaa 129497

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>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 133054

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   atgaaatgattcatgaactt 210
             ||||||||||||||||||||
Sbjct: 41427 atgaaatgattcatgaactt 41446

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>gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, complete sequence
          Length = 218363

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  tgaaatgattcatgaacttg 211
            ||||||||||||||||||||
Sbjct: 5943 tgaaatgattcatgaacttg 5924

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>gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, complete sequence
          Length = 169636

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     tcaaaatgcaggttttcatg 97
              ||||||||||||||||||||
Sbjct: 135932 tcaaaatgcaggttttcatg 135951

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>gb|AC129012.4| Mus musculus BAC clone RP24-545L10 from chromosome 10, complete
             sequence
          Length = 143029

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   tgaaatgattcatgaacttg 211
             ||||||||||||||||||||
Sbjct: 60352 tgaaatgattcatgaacttg 60371

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>emb|AJ245511.1|MTR245511 Medicago truncatula partial mRNA for ubiquitin
          Length = 229

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 ttctaccgtcttctagctgt 133
           ||||||||||||||||||||
Sbjct: 163 ttctaccgtcttctagctgt 144

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>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence
          Length = 191328

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tattcaaactagtcacaaga 157
             ||||||||||||||||||||
Sbjct: 73760 tattcaaactagtcacaaga 73741

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>gb|AC073358.14| Homo sapiens 3 BAC RP11-501M7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164078

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 77    ttcaaaatgcaggttttcatgagttctgcagt 108
             ||||||||||||| ||||||| ||||||||||
Sbjct: 47742 ttcaaaatgcagggtttcatg-gttctgcagt 47772

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>emb|BX908397.7| Zebrafish DNA sequence from clone CH211-103F16 in linkage group 22,
             complete sequence
          Length = 87359

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   gtcttctagctgtaatatattcaa 144
             |||||||||||| |||||||||||
Sbjct: 39390 gtcttctagctgaaatatattcaa 39413

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>gb|AF067832.1|AF067832 Stylonychia mytilus micronuclear alpha telomere binding protein gene,
            complete sequence
          Length = 2686

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  aaatgattcatgaacttgaa 213
            ||||||||||||||||||||
Sbjct: 2443 aaatgattcatgaacttgaa 2462

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>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tcaaaatgcaggttttcatg 97
             ||||||||||||||||||||
Sbjct: 72018 tcaaaatgcaggttttcatg 72037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,978,158
Number of Sequences: 3902068
Number of extensions: 2978158
Number of successful extensions: 55280
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55211
Number of HSP's gapped (non-prelim): 70
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result