>SP4_MOUSE (Q62445) Transcription factor Sp4|
          Length = 782

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 32  QTTTYTEDSTF*NNKQ*ITSEQSSCAPVS-MPSSPTLERTSATTMSIGLLAA 184
           Q TT T+  T  N  Q +++  +S AP S MP SP+   T  TT S  L ++
Sbjct: 283 QPTTTTDSGTS-NGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTTLTSS 333

>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi|
           anemia group D1 protein)
          Length = 3418

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 529 NQPAEXKFIPLSERVLSCAAHPLSHTIV--CGTEFSSLLMVSQKHE 398
           N P   K   + E VL+ A HP+ H+ V    T+F S   +   HE
Sbjct: 719 NDPKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHE 764

>CO6_PANTR (P61134) Complement component C6 precursor|
          Length = 934

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 216 PARVTCQPNSTNPMLHIAITCR----TSMR**AAL*MPDAIDRRYCLCLEQAPDALRPYS 383
           P+R TCQ NS  P +  ++TC     T +R    L    +     C+C+    D    +S
Sbjct: 741 PSRYTCQGNSWTPPISNSLTCEKDTLTKLRGHCQLGQKQSGSE--CICMSPEEDCSH-HS 797

Query: 384 GSLTVSCFCDTMSNDENSVP 443
             L   C  DT SND  + P
Sbjct: 798 EDL---CVFDTDSNDYFTSP 814

>YIM0_YEAST (P40475) Hypothetical 61.8 kDa protein in KGD1-SIM1 intergenic|
           region
          Length = 563

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
 Frame = -3

Query: 349 KHKQYLRSIASGIHNAAYYLMDVLHV--------IAMCSMGFVEFGWQVT----LAGKLC 206
           K+K     +A  IH+ ++Y  +++          + + S+GF  FGW ++    LA  LC
Sbjct: 392 KYKGDKNKVAELIHSNSHYAFNLVEARLHPAFVTLLLSSIGFTAFGWCISVKTPLAAVLC 451

Query: 205 SSS 197
           +S+
Sbjct: 452 TSA 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,559,630
Number of Sequences: 219361
Number of extensions: 1561373
Number of successful extensions: 3844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3840
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)