>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
 Frame = -3

Query: 671 DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIH 492
           D V ++ ++      G   EA K  D M   G+ P   TY + L+  A   AL +   + 
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEH----NLVTWKVIITGFAQN 324
            ++ +     + +V S LI  Y + GKVD+A  VFS + +     N VT+  +I    ++
Sbjct: 360 DLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419

Query: 323 GLCEEAFKYMYLMQQQGYDADDFMLSKVL 237
           G  E+A  Y   M  +G    + + + ++
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
 Frame = -3

Query: 671 DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIH 492
           + + +  +I+GY   G   EA+K L  M+  G+ PNT TYS+ +    K+  ++D   + 
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEH----NLVTWKVIITGFAQN 324
             +  +    ++   + ++    +  +   A+ ++  + E      L T+ +I+ G  +N
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 323 GLCEEAFK 300
            L ++A +
Sbjct: 630 KLTDDALQ 637



 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
 Frame = -3

Query: 665 VAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGV 486
           + + ++I G  +      A + + +ML  G+  NT  ++S + +  K   + +  ++  +
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 485 VNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALP----EHNLVTWKVIITGFAQNGL 318
           + +     NV   ++LI+ Y   GK+DEA ++ S +     + N VT+  +I G+ +   
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 317 CEEAFKYMYLMQQQGYDAD 261
            E+A      M+  G   D
Sbjct: 562 MEDALVLFKEMESSGVSPD 580



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
 Frame = -3

Query: 671  DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALK--------ACAK--- 525
            + V ++ +I+GY  +    +AL    +M   GV+P+  TY+  L+        A AK   
Sbjct: 545  NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604

Query: 524  LEALQDGRRI---------HGVVNKT------PAFSNVFVG---------SSLIDMYMRC 417
            +   + G +I         HG+            F N+ +          + +ID  ++ 
Sbjct: 605  VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664

Query: 416  GKVDEARRVFSALPEHNLV----TWKVIITGFAQNGLCEEAFKYMYLMQQQGYDADDFML 249
            G+ DEA+ +F A   + LV    T++++       GL EE  +    M+  G   D  ML
Sbjct: 665  GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGML 724

Query: 248  SKVL 237
            + ++
Sbjct: 725  NFIV 728



 Score = 35.4 bits (80), Expect = 0.16
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
 Frame = -3

Query: 671 DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIH 492
           + + + ++I  +   G   E+ K  + M+  GV PN  TY++ +        + +  ++ 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEH----NLVTWKVIITGFAQ 327
             +       N    S+LI+ Y +  ++++A  +F  +       +++T+ +I+ G  Q
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
 Frame = -3

Query: 671 DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIH 492
           D   + ++I+G          L   D+ML  G+ P+ ++Y++ +    KL   ++  R+ 
Sbjct: 82  DVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVL 141

Query: 491 ------GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEH---NLVTWKVIIT 339
                   +N  P   NV     L+D   +CG +D A  +F  +       L+T+ ++I 
Sbjct: 142 YKDLQLAGLNPGPDTYNV-----LLDALCKCGYIDNALELFKEMQSRFKPELMTYNILIN 196

Query: 338 GFAQNGLCEEAFKYMYLMQQQGYDADDFMLSKVL 237
           G  ++     A   +  +++ GY  +    + +L
Sbjct: 197 GLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTIL 230



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 24/143 (16%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
 Frame = -3

Query: 671 DAVAWTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIH 492
           + + +  +I+G         A   L ++   G TPN  TY++ LK   K   ++ G ++ 
Sbjct: 187 ELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLF 246

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSAL----PEHNLVTWKVIITGFAQN 324
             + +     + +   +++   ++ G+  EA      L      H++V++  ++  + ++
Sbjct: 247 LEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKD 306

Query: 323 GLCEEAFKYMYLMQQQGYDADDF 255
           G  +     +  ++++G  AD++
Sbjct: 307 GNLDAVDDLLGEIERRGMKADEY 329

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -3

Query: 659 WTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACA----KLEALQDGRRIH 492
           +T +I G   VG+  +A +  +DM    + P+  TY++    CA    K  ALQ   ++ 
Sbjct: 174 YTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 233

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSAL 378
             +       N+    +L+ +  +C  +     VF  +
Sbjct: 234 QQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEI 271

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
 Frame = -3

Query: 659 WTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACA----KLEALQDGRRIH 492
           +TA+I G   VG+  +A    + M    + P+  TY++    CA    K  ALQ   ++ 
Sbjct: 174 YTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 233

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSAL 378
             +       N+    +L+ M  +C  +     VF  +
Sbjct: 234 QQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEI 271

>ADAM2_BOVIN (O77780) ADAM 2 precursor (A disintegrin and metalloproteinase|
           domain 2) (Fertilin beta subunit) (PH-30) (PH30)
           (PH30-beta)
          Length = 745

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -3

Query: 614 EALKSLDDMLWD-GVTPNTYT-YSSALKACAKLEALQDGRRIHGVVNKTPAFSNVFVGSS 441
           + L S++D+  + GVTP  +T  +S    C KL    D R +  V N +  +SN+  G  
Sbjct: 512 QRLNSMNDLSGNCGVTPTGFTPCTSENVRCGKLLCTYDKREVISVENASVMYSNI-NGKI 570

Query: 440 LIDMYMRCGKVDE 402
            I ++   G  DE
Sbjct: 571 CIGLHYEYGNEDE 583

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = -3

Query: 659 WTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACA----KLEALQDGRRIH 492
           +T +I G   VG+  +A    + M    + P+  TY++    CA    K  ALQ   ++ 
Sbjct: 176 YTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLR 235

Query: 491 GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSAL 378
             +       N+    +L+ M  +C  +     VF  +
Sbjct: 236 QQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEI 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,681,629
Number of Sequences: 219361
Number of extensions: 1797461
Number of successful extensions: 3996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3991
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)