Clone Information

BLAST Search Result

Clone Name	rbah62f24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC145383.3\| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom...	422	e-115
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	422	e-115
3	emb\|AL713930.5\|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0...	422	e-115
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	422	e-115
5	dbj\|AK073773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	422	e-115
6	gb\|BT018073.1\| Zea mays clone EL01N0551E06.c mRNA sequence	335	1e-88
7	gb\|AY112606.1\| Zea mays CL42477_1 mRNA sequence	86	2e-13
8	emb\|CR956431.10\| Pig DNA sequence from clone PigE-60M9 on chromo...	44	0.60
9	emb\|CR956412.5\| Pig DNA sequence from clone PigE-52G20 on chromo...	44	0.60
10	emb\|CR388178.5\| Zebrafish DNA sequence from clone DKEY-114D20 in...	44	0.60
11	gb\|AC153572.13\| Mus musculus 10 BAC RP23-187O15 (Roswell Park Ca...	42	2.4
12	emb\|Z75741.1\|HS107N3 Human DNA sequence from clone RP1-107N3 on ...	42	2.4
13	gb\|AC159325.13\| Mus musculus 10 BAC RP23-382A21 (Roswell Park Ca...	42	2.4
14	gb\|AC163614.4\| Mus musculus BAC clone RP23-102K8 from chromosome...	42	2.4
15	emb\|AL133454.6\|CNS01DV5 Human chromosome 14 DNA sequence BAC R-5...	42	2.4
16	gb\|DP000014.1\| Callithrix jacchus target 1 genomic scaffold	40	9.4
17	gb\|AC125377.5\| Mus musculus BAC clone RP23-27C10 from chromosome...	40	9.4
18	gb\|AC147124.2\| Mus musculus BAC clone RP24-163K4 from chromosome...	40	9.4
19	gb\|AC132570.3\| Mus musculus BAC clone RP24-531D1 from chromosome...	40	9.4
20	ref\|XM_752259.1\| Ustilago maydis 521 hypothetical protein (UM012...	40	9.4
21	gb\|AC125226.3\| Mus musculus BAC clone RP23-39D21 from 7, complet...	40	9.4
22	gb\|AC116581.4\| Mus musculus BAC clone RP23-295E15 from 1, comple...	40	9.4
23	gb\|AC159168.3\| Callicebus moloch clone LB5-83N20, complete sequence	40	9.4
24	gb\|AC147406.13\| Medicago truncatula clone mth2-154b3, complete s...	40	9.4
25	gb\|AC103574.7\| Rattus norvegicus 1 BAC CH230-205C19 (Children's ...	40	9.4
26	emb\|AL357932.15\| Human DNA sequence from clone RP11-435N12 on ch...	40	9.4
27	emb\|AL355138.19\| Human DNA sequence from clone RP11-203J14 on ch...	40	9.4
28	emb\|AL355988.7\| Human DNA sequence from clone RP5-1182H6 on chro...	40	9.4
29	emb\|AL121902.13\|HSBA80K6 Human DNA sequence from clone RP11-80K6...	40	9.4
30	emb\|AL603947.1\|UMA0006 Ustilago maydis gene for predicted plasma...	40	9.4
31	gb\|AC161939.4\| Mus musculus 10 BAC RP24-364P6 (Roswell Park Canc...	40	9.4
32	gb\|AC112713.3\| Homo sapiens BAC clone RP11-175H11 from 4, comple...	40	9.4
33	dbj\|AK140065.1\| Mus musculus adult male corpora quadrigemina cDN...	40	9.4
34	gb\|AC182688.2\| Populus trichocarpa clone Pop1-39N8, complete seq...	40	9.4
35	gb\|AC146740.3\| Callithrix jacchus clone CH259-204H2, complete se...	40	9.4
36	gb\|AC160408.6\| Mus musculus 10 BAC RP23-116I16 (Roswell Park Can...	40	9.4
37	gb\|AC157375.2\| Medicago truncatula chromosome 2 BAC clone mth2-5...	40	9.4
38	dbj\|AP006243.1\| Homo sapiens genomic DNA, chromosome 6, clone:RP...	40	9.4
39	gb\|DP000019.1\| Callicebus moloch target 1 genomic scaffold	40	9.4
40	gb\|AC151372.3\| Aotus nancymaae clone CH258-368D16, complete sequ...	40	9.4
41	emb\|AL691418.9\| Mouse DNA sequence from clone RP23-193L14 on chr...	40	9.4
42	dbj\|AP002531.2\| Homo sapiens genomic DNA, chromosome 6q21, anti-...	40	9.4
43	dbj\|AB042236.1\| Homo sapiens genomic DNA, chromosome 6q21, clone...	40	9.4

>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
              sequence
          Length = 141691

 Score =  422 bits (213), Expect = e-115
 Identities = 408/473 (86%)
 Strand = Plus / Plus

                                                                          
Query: 211    ttccattgaagatcaccgcatgatgtcagaacttttgaaagcataaagtcatcagcatcg 270
              |||||||||||||| || ||||||||||||||| |||| |||| ||| |||||| | || 
Sbjct: 107175 ttccattgaagatctccacatgatgtcagaactgttgagagcacaaaatcatcaacctca 107234

                                                                          
Query: 271    tacccttgttgctgcattaggtacatatacttaaaagcctcttcacagaggccattctga 330
              | ||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 107235 tgcccttcttgttgcattaggtacatgtacttcaaagcctcttcacagaggccattctga 107294

                                                                          
Query: 331    gcaaatcctgtaattatcactttccatgttaccaagttgtgttctggcagggcgctgaag 390
              |||||||||||||| |||||||||||||| || | ||| |||||||||| |||    |||
Sbjct: 107295 gcaaatcctgtaataatcactttccatgtcacaaggttatgttctggcatggcatcaaag 107354

                                                                          
Query: 391    actcgtcgagcttcgtcgacttttccacacctcatgtacatatcgatcaatgagcttccc 450
              || | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 107355 acacttcgggcttcgtcgacttttccacacctcatgtacatatcgataagtgagcttccc 107414

                                                                          
Query: 451    acaaacacatttgagaaggcaggagtcttgttaacaacaccgtgaatcctccttccatct 510
              ||||||||||| |||||  |  ||||||||||||||| ||| || ||| ||||||||| |
Sbjct: 107415 acaaacacattggagaaatcttgagtcttgttaacaaaaccatggatcttccttccatat 107474

                                                                          
Query: 511    tgcagagcctctagtttcgcacaggctttcaaagctgaggaataagtgtaggtatttgga 570
              ||||||||||| | ||| ||||| ||||||| ||| ||||| |||||||| |||||||| 
Sbjct: 107475 tgcagagcctccaattttgcacaagctttcagagccgaggagtaagtgtatgtatttggt 107534

                                                                          
Query: 571    gtcacgccatcccataacatatcatctaatgacttaagtgcttcagcactatgaccaacg 630
               | || |||||||||| ||||||||||||||| |||||||||||| || ||||||| |  
Sbjct: 107535 tttacaccatcccatagcatatcatctaatgatttaagtgcttcaacattatgacctaga 107594

                                                                   
Query: 631    ctattgtagcctgaaatcatagctgtccatgcgacagcatcacggtccggcat 683
               |||||||||| ||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 107595 ttattgtagccggaaatcagagcagtccatgagatagcatcacggtcaggcat 107647

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  422 bits (213), Expect = e-115
 Identities = 408/473 (86%)
 Strand = Plus / Plus

                                                                            
Query: 211      ttccattgaagatcaccgcatgatgtcagaacttttgaaagcataaagtcatcagcatcg 270
                |||||||||||||| || ||||||||||||||| |||| |||| ||| |||||| | || 
Sbjct: 24731628 ttccattgaagatctccacatgatgtcagaactgttgagagcacaaaatcatcaacctca 24731687

                                                                            
Query: 271      tacccttgttgctgcattaggtacatatacttaaaagcctcttcacagaggccattctga 330
                | ||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 24731688 tgcccttcttgttgcattaggtacatgtacttcaaagcctcttcacagaggccattctga 24731747

                                                                            
Query: 331      gcaaatcctgtaattatcactttccatgttaccaagttgtgttctggcagggcgctgaag 390
                |||||||||||||| |||||||||||||| || | ||| |||||||||| |||    |||
Sbjct: 24731748 gcaaatcctgtaataatcactttccatgtcacaaggttatgttctggcatggcatcaaag 24731807

                                                                            
Query: 391      actcgtcgagcttcgtcgacttttccacacctcatgtacatatcgatcaatgagcttccc 450
                || | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 24731808 acacttcgggcttcgtcgacttttccacacctcatgtacatatcgataagtgagcttccc 24731867

                                                                            
Query: 451      acaaacacatttgagaaggcaggagtcttgttaacaacaccgtgaatcctccttccatct 510
                ||||||||||| |||||  |  ||||||||||||||| ||| || ||| ||||||||| |
Sbjct: 24731868 acaaacacattggagaaatcttgagtcttgttaacaaaaccatggatcttccttccatat 24731927

                                                                            
Query: 511      tgcagagcctctagtttcgcacaggctttcaaagctgaggaataagtgtaggtatttgga 570
                ||||||||||| | ||| ||||| ||||||| ||| ||||| |||||||| |||||||| 
Sbjct: 24731928 tgcagagcctccaattttgcacaagctttcagagccgaggagtaagtgtatgtatttggt 24731987

                                                                            
Query: 571      gtcacgccatcccataacatatcatctaatgacttaagtgcttcagcactatgaccaacg 630
                 | || |||||||||| ||||||||||||||| |||||||||||| || ||||||| |  
Sbjct: 24731988 tttacaccatcccatagcatatcatctaatgatttaagtgcttcaacattatgacctaga 24732047

                                                                     
Query: 631      ctattgtagcctgaaatcatagctgtccatgcgacagcatcacggtccggcat 683
                 |||||||||| ||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 24732048 ttattgtagccggaaatcagagcagtccatgagatagcatcacggtcaggcat 24732100

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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183327

 Score =  422 bits (213), Expect = e-115
 Identities = 408/473 (86%)
 Strand = Plus / Plus

                                                                         
Query: 211   ttccattgaagatcaccgcatgatgtcagaacttttgaaagcataaagtcatcagcatcg 270
             |||||||||||||| || ||||||||||||||| |||| |||| ||| |||||| | || 
Sbjct: 27147 ttccattgaagatctccacatgatgtcagaactgttgagagcacaaaatcatcaacctca 27206

                                                                         
Query: 271   tacccttgttgctgcattaggtacatatacttaaaagcctcttcacagaggccattctga 330
             | ||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 27207 tgcccttcttgttgcattaggtacatgtacttcaaagcctcttcacagaggccattctga 27266

                                                                         
Query: 331   gcaaatcctgtaattatcactttccatgttaccaagttgtgttctggcagggcgctgaag 390
             |||||||||||||| |||||||||||||| || | ||| |||||||||| |||    |||
Sbjct: 27267 gcaaatcctgtaataatcactttccatgtcacaaggttatgttctggcatggcatcaaag 27326

                                                                         
Query: 391   actcgtcgagcttcgtcgacttttccacacctcatgtacatatcgatcaatgagcttccc 450
             || | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 27327 acacttcgggcttcgtcgacttttccacacctcatgtacatatcgataagtgagcttccc 27386

                                                                         
Query: 451   acaaacacatttgagaaggcaggagtcttgttaacaacaccgtgaatcctccttccatct 510
             ||||||||||| |||||  |  ||||||||||||||| ||| || ||| ||||||||| |
Sbjct: 27387 acaaacacattggagaaatcttgagtcttgttaacaaaaccatggatcttccttccatat 27446

                                                                         
Query: 511   tgcagagcctctagtttcgcacaggctttcaaagctgaggaataagtgtaggtatttgga 570
             ||||||||||| | ||| ||||| ||||||| ||| ||||| |||||||| |||||||| 
Sbjct: 27447 tgcagagcctccaattttgcacaagctttcagagccgaggagtaagtgtatgtatttggt 27506

                                                                         
Query: 571   gtcacgccatcccataacatatcatctaatgacttaagtgcttcagcactatgaccaacg 630
              | || |||||||||| ||||||||||||||| |||||||||||| || ||||||| |  
Sbjct: 27507 tttacaccatcccatagcatatcatctaatgatttaagtgcttcaacattatgacctaga 27566

                                                                  
Query: 631   ctattgtagcctgaaatcatagctgtccatgcgacagcatcacggtccggcat 683
              |||||||||| ||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 27567 ttattgtagccggaaatcagagcagtccatgagatagcatcacggtcaggcat 27619

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  422 bits (213), Expect = e-115
 Identities = 408/473 (86%)
 Strand = Plus / Plus

                                                                            
Query: 211      ttccattgaagatcaccgcatgatgtcagaacttttgaaagcataaagtcatcagcatcg 270
                |||||||||||||| || ||||||||||||||| |||| |||| ||| |||||| | || 
Sbjct: 24648458 ttccattgaagatctccacatgatgtcagaactgttgagagcacaaaatcatcaacctca 24648517

                                                                            
Query: 271      tacccttgttgctgcattaggtacatatacttaaaagcctcttcacagaggccattctga 330
                | ||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 24648518 tgcccttcttgttgcattaggtacatgtacttcaaagcctcttcacagaggccattctga 24648577

                                                                            
Query: 331      gcaaatcctgtaattatcactttccatgttaccaagttgtgttctggcagggcgctgaag 390
                |||||||||||||| |||||||||||||| || | ||| |||||||||| |||    |||
Sbjct: 24648578 gcaaatcctgtaataatcactttccatgtcacaaggttatgttctggcatggcatcaaag 24648637

                                                                            
Query: 391      actcgtcgagcttcgtcgacttttccacacctcatgtacatatcgatcaatgagcttccc 450
                || | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 24648638 acacttcgggcttcgtcgacttttccacacctcatgtacatatcgataagtgagcttccc 24648697

                                                                            
Query: 451      acaaacacatttgagaaggcaggagtcttgttaacaacaccgtgaatcctccttccatct 510
                ||||||||||| |||||  |  ||||||||||||||| ||| || ||| ||||||||| |
Sbjct: 24648698 acaaacacattggagaaatcttgagtcttgttaacaaaaccatggatcttccttccatat 24648757

                                                                            
Query: 511      tgcagagcctctagtttcgcacaggctttcaaagctgaggaataagtgtaggtatttgga 570
                ||||||||||| | ||| ||||| ||||||| ||| ||||| |||||||| |||||||| 
Sbjct: 24648758 tgcagagcctccaattttgcacaagctttcagagccgaggagtaagtgtatgtatttggt 24648817

                                                                            
Query: 571      gtcacgccatcccataacatatcatctaatgacttaagtgcttcagcactatgaccaacg 630
                 | || |||||||||| ||||||||||||||| |||||||||||| || ||||||| |  
Sbjct: 24648818 tttacaccatcccatagcatatcatctaatgatttaagtgcttcaacattatgacctaga 24648877

                                                                     
Query: 631      ctattgtagcctgaaatcatagctgtccatgcgacagcatcacggtccggcat 683
                 |||||||||| ||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 24648878 ttattgtagccggaaatcagagcagtccatgagatagcatcacggtcaggcat 24648930

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>dbj|AK073773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066I06, full
            insert sequence
          Length = 2282

 Score =  422 bits (213), Expect = e-115
 Identities = 408/473 (86%)
 Strand = Plus / Minus

                                                                        
Query: 211  ttccattgaagatcaccgcatgatgtcagaacttttgaaagcataaagtcatcagcatcg 270
            |||||||||||||| || ||||||||||||||| |||| |||| ||| |||||| | || 
Sbjct: 2077 ttccattgaagatctccacatgatgtcagaactgttgagagcacaaaatcatcaacctca 2018

                                                                        
Query: 271  tacccttgttgctgcattaggtacatatacttaaaagcctcttcacagaggccattctga 330
            | ||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2017 tgcccttcttgttgcattaggtacatgtacttcaaagcctcttcacagaggccattctga 1958

                                                                        
Query: 331  gcaaatcctgtaattatcactttccatgttaccaagttgtgttctggcagggcgctgaag 390
            |||||||||||||| |||||||||||||| || | ||| |||||||||| |||    |||
Sbjct: 1957 gcaaatcctgtaataatcactttccatgtcacaaggttatgttctggcatggcatcaaag 1898

                                                                        
Query: 391  actcgtcgagcttcgtcgacttttccacacctcatgtacatatcgatcaatgagcttccc 450
            || | ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1897 acacttcgggcttcgtcgacttttccacacctcatgtacatatcgataagtgagcttccc 1838

                                                                        
Query: 451  acaaacacatttgagaaggcaggagtcttgttaacaacaccgtgaatcctccttccatct 510
            ||||||||||| |||||  |  ||||||||||||||| ||| || ||| ||||||||| |
Sbjct: 1837 acaaacacattggagaaatcttgagtcttgttaacaaaaccatggatcttccttccatat 1778

                                                                        
Query: 511  tgcagagcctctagtttcgcacaggctttcaaagctgaggaataagtgtaggtatttgga 570
            ||||||||||| | ||| ||||| ||||||| ||| ||||| |||||||| |||||||| 
Sbjct: 1777 tgcagagcctccaattttgcacaagctttcagagccgaggagtaagtgtatgtatttggt 1718

                                                                        
Query: 571  gtcacgccatcccataacatatcatctaatgacttaagtgcttcagcactatgaccaacg 630
             | || |||||||||| ||||||||||||||| |||||||||||| || ||||||| |  
Sbjct: 1717 tttacaccatcccatagcatatcatctaatgatttaagtgcttcaacattatgacctaga 1658

                                                                 
Query: 631  ctattgtagcctgaaatcatagctgtccatgcgacagcatcacggtccggcat 683
             |||||||||| ||||||| ||| ||||||| || |||||||||||| |||||
Sbjct: 1657 ttattgtagccggaaatcagagcagtccatgagatagcatcacggtcaggcat 1605

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>gb|BT018073.1| Zea mays clone EL01N0551E06.c mRNA sequence
          Length = 1088

 Score =  335 bits (169), Expect = 1e-88
 Identities = 370/437 (84%)
 Strand = Plus / Minus

                                                                       
Query: 247 gaaagcataaagtcatcagcatcgtacccttgttgctgcattaggtacatatacttaaaa 306
           ||||||| ||| |||||| || | || |||| ||| ||||||||| |||| || || |||
Sbjct: 734 gaaagcacaaattcatcaacaacataaccttcttgttgcattaggaacatgtatttcaaa 675

                                                                       
Query: 307 gcctcttcacagaggccattctgagcaaatcctgtaattatcactttccatgttaccaag 366
           |||||||||| | ||||||| || | |||||||||||| ||   |||||||||||| |||
Sbjct: 674 gcctcttcactgcggccattttgtgtaaatcctgtaatcatacttttccatgttactaag 615

                                                                       
Query: 367 ttgtgttctggcagggcgctgaagactcgtcgagcttcgtcgacttttccacacctcatg 426
           ||||| ||||||| ||||  |||||||| ||||||||| || ||||| ||||||| ||||
Sbjct: 614 ttgtgctctggcatggcgtcgaagactcttcgagcttcatcaactttcccacaccgcatg 555

                                                                       
Query: 427 tacatatcgatcaatgagcttcccacaaacacatttgagaaggcaggagtcttgttaaca 486
           |||||||| |||| ||||| ||||||||||||||||||||| ||  | ||||||||||||
Sbjct: 554 tacatatctatcagtgagcatcccacaaacacatttgagaaagcttgggtcttgttaaca 495

                                                                       
Query: 487 acaccgtgaatcctccttccatcttgcagagcctctagtttcgcacaggctttcaaagct 546
           ||||| || |||||||| ||||||||||||||||| | | | ||||| ||||||||||||
Sbjct: 494 acaccatggatcctcctcccatcttgcagagcctccaatctggcacaagctttcaaagct 435

                                                                       
Query: 547 gaggaataagtgtaggtatttggagtcacgccatcccataacatatcatctaatgactta 606
           |||||||| ||||| || |||||   ||| |||||||||||||| ||||| ||||| |||
Sbjct: 434 gaggaataggtgtaagtgtttggtaccacaccatcccataacatttcatccaatgattta 375

                                                                       
Query: 607 agtgcttcagcactatgaccaacgctattgtagcctgaaatcatagctgtccatgcgaca 666
           || |||||| || |||| ||||   | || ||||| ||||||||||||||||||||||||
Sbjct: 374 agcgcttcaacattatggccaagattgttatagcccgaaatcatagctgtccatgcgaca 315

                            
Query: 667 gcatcacggtccggcat 683
           ||||||||||| |||||
Sbjct: 314 gcatcacggtcaggcat 298

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>gb|AY112606.1| Zea mays CL42477_1 mRNA sequence
          Length = 442

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 109/131 (83%)
 Strand = Plus / Minus

                                                                       
Query: 247 gaaagcataaagtcatcagcatcgtacccttgttgctgcattaggtacatatacttaaaa 306
           ||||||| ||| |||||| || | || |||| ||| ||||||||| |||| || || |||
Sbjct: 132 gaaagcacaaattcatcaacaacataaccttcttgttgcattaggaacatgtatttcaaa 73

                                                                       
Query: 307 gcctcttcacagaggccattctgagcaaatcctgtaattatcactttccatgttaccaag 366
           |||||||||| | ||||||| || | |||||||| ||| || |||||||||||||| |||
Sbjct: 72  gcctcttcactgcggccattttgtgtaaatcctgcaatcattactttccatgttactaag 13

                      
Query: 367 ttgtgttctgg 377
           ||||| |||||
Sbjct: 12  ttgtgctctgg 2

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>emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromosome 7, complete
            sequence
          Length = 206517

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 337  cctgtaattatcactttccatg 358
            ||||||||||||||||||||||
Sbjct: 7318 cctgtaattatcactttccatg 7339

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>emb|CR956412.5| Pig DNA sequence from clone PigE-52G20 on chromosome 7, complete
             sequence
          Length = 157941

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 337   cctgtaattatcactttccatg 358
             ||||||||||||||||||||||
Sbjct: 62995 cctgtaattatcactttccatg 63016

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>emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in linkage group 22,
             complete sequence
          Length = 171742

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     atttgtttttgtgtgattgctc 24
             ||||||||||||||||||||||
Sbjct: 34608 atttgtttttgtgtgattgctc 34587

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>gb|AC153572.13| Mus musculus 10 BAC RP23-187O15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 210950

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 23    tcaatctcgaaagcaatcacatcacatga 51
             |||| |||||||||||||| |||||||||
Sbjct: 50973 tcaaactcgaaagcaatcaaatcacatga 51001

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>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a
             kinesin heavy chain member 2 (KIF2) pseudogene and a
             Huntingtin interacting protein K (HYPK) pseudogene,
             complete sequence
          Length = 174045

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 192   aaaagagatggaatctgacttccat 216
             |||||||||||||||||| ||||||
Sbjct: 23384 aaaagagatggaatctgatttccat 23360

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>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 201815

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 23    tcaatctcgaaagcaatcacatcacatga 51
             |||| |||||||||||||| |||||||||
Sbjct: 30848 tcaaactcgaaagcaatcaaatcacatga 30820

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>gb|AC163614.4| Mus musculus BAC clone RP23-102K8 from chromosome 1, complete sequence
          Length = 201646

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    cctcttcacagaggccattct 328
              |||||||||||||||||||||
Sbjct: 105076 cctcttcacagaggccattct 105056

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>emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-580E16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165159

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 445    cttcccacaaacacatttgag 465
              |||||||||||||||||||||
Sbjct: 148004 cttcccacaaacacatttgag 147984

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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cacaaacacatttgagaagg 469
             ||||||||||||||||||||
Sbjct: 49079 cacaaacacatttgagaagg 49098

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>gb|AC125377.5| Mus musculus BAC clone RP23-27C10 from chromosome 1, complete sequence
          Length = 227511

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    ctgcattaggtacatatacttaaa 305
              ||||||||||| ||||||||||||
Sbjct: 161487 ctgcattaggttcatatacttaaa 161464

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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   tgatgtcagaacttttgaaagcat 254
             ||||||||||| ||||||||||||
Sbjct: 27327 tgatgtcagaagttttgaaagcat 27350

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>gb|AC132570.3| Mus musculus BAC clone RP24-531D1 from chromosome 5, complete sequence
          Length = 183005

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   cccagaaattaactcagaca 150
             ||||||||||||||||||||
Sbjct: 72484 cccagaaattaactcagaca 72503

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>ref|XM_752259.1| Ustilago maydis 521 hypothetical protein (UM01205.1) partial mRNA
          Length = 2895

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 24  caatctcgaaagcaatcacatcac 47
           |||||| |||||||||||||||||
Sbjct: 589 caatcttgaaagcaatcacatcac 566

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>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence
          Length = 133624

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    tgatgtcagaacttttgaaagcat 254
              ||||||||||| ||||||||||||
Sbjct: 132180 tgatgtcagaagttttgaaagcat 132203

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>gb|AC116581.4| Mus musculus BAC clone RP23-295E15 from 1, complete sequence
          Length = 156332

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   ctgcattaggtacatatacttaaa 305
             ||||||||||| ||||||||||||
Sbjct: 11745 ctgcattaggttcatatacttaaa 11722

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>gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cacaaacacatttgagaagg 469
             ||||||||||||||||||||
Sbjct: 29030 cacaaacacatttgagaagg 29049

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>gb|AC147406.13| Medicago truncatula clone mth2-154b3, complete sequence
          Length = 116463

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 644   aaatcatagctgtccatgcgacagcatc 671
             ||||||||||||||||||| ||| ||||
Sbjct: 22571 aaatcatagctgtccatgcaacaacatc 22544

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>gb|AC103574.7| Rattus norvegicus 1 BAC CH230-205C19 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 199047

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tatttgtttttgtgtgattg 21
              ||||||||||||||||||||
Sbjct: 108401 tatttgtttttgtgtgattg 108382

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>emb|AL357932.15| Human DNA sequence from clone RP11-435N12 on chromosome 1, complete
             sequence
          Length = 179782

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   agaacttttgaaagcataaa 257
             ||||||||||||||||||||
Sbjct: 73094 agaacttttgaaagcataaa 73075

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>emb|AL355138.19| Human DNA sequence from clone RP11-203J14 on chromosome 10 Contains
            the gene for neuropeptide FF 1; RFamide-related peptide
            receptor (OT7T022), the 3' end of a novel gene (FLJ10751)
            and two CpG islands, complete sequence
          Length = 80236

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  cctcttcacagaggccattc 327
            ||||||||||||||||||||
Sbjct: 6670 cctcttcacagaggccattc 6689

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>emb|AL355988.7| Human DNA sequence from clone RP5-1182H6 on chromosome 1q31.2-32.1
            Contains the 3' end of the PTPRC gene for protein
            tyrosine phosphatase receptor type C, complete sequence
          Length = 51394

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  aattaatccccagaaattaa 142
            ||||||||||||||||||||
Sbjct: 2269 aattaatccccagaaattaa 2288

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>emb|AL121902.13|HSBA80K6 Human DNA sequence from clone RP11-80K6 on chromosome 20 Contains a
             novel gene, the RPL36P1 gene for ribosomal protein L36
             pseudogene 1, the 5' end of the gene for a novel protein
             (FLJ33887) and a CpG island, complete sequence
          Length = 170740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   aaacacatttgagaaggcag 472
             ||||||||||||||||||||
Sbjct: 22026 aaacacatttgagaaggcag 22045

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>emb|AL603947.1|UMA0006 Ustilago maydis gene for predicted plasmamembrane-ATPase
          Length = 3987

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 24   caatctcgaaagcaatcacatcac 47
            |||||| |||||||||||||||||
Sbjct: 1681 caatcttgaaagcaatcacatcac 1658

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>gb|AC161939.4| Mus musculus 10 BAC RP24-364P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162031

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   caggaaattttacctatctg 168
             ||||||||||||||||||||
Sbjct: 59949 caggaaattttacctatctg 59968

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>gb|AC112713.3| Homo sapiens BAC clone RP11-175H11 from 4, complete sequence
          Length = 114398

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tttgtttttgtgtgattgct 23
             ||||||||||||||||||||
Sbjct: 52022 tttgtttttgtgtgattgct 52003

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>dbj|AK140065.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230119F06
            product:unclassifiable, full insert sequence
          Length = 3673

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 231  tgatgtcagaacttttgaaagcat 254
            ||||||||||| ||||||||||||
Sbjct: 1743 tgatgtcagaagttttgaaagcat 1720

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>gb|AC182688.2| Populus trichocarpa clone Pop1-39N8, complete sequence
          Length = 73392

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   catatcatctaatgacttaa 607
             ||||||||||||||||||||
Sbjct: 36003 catatcatctaatgacttaa 36022

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>gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete sequence
          Length = 224361

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cacaaacacatttgagaagg 469
             ||||||||||||||||||||
Sbjct: 49079 cacaaacacatttgagaagg 49098

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>gb|AC160408.6| Mus musculus 10 BAC RP23-116I16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 210970

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   caggaaattttacctatctg 168
             ||||||||||||||||||||
Sbjct: 94390 caggaaattttacctatctg 94371

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>gb|AC157375.2| Medicago truncatula chromosome 2 BAC clone mth2-55b12, complete sequence
          Length = 125311

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 644    aaatcatagctgtccatgcgacagcatc 671
              ||||||||||||||||||| ||| ||||
Sbjct: 121889 aaatcatagctgtccatgcaacaacatc 121862

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>dbj|AP006243.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-188I7, complete
             sequence
          Length = 163233

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ttttgaaagcataaagtcat 262
             ||||||||||||||||||||
Sbjct: 57557 ttttgaaagcataaagtcat 57576

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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cacaaacacatttgagaagg 469
             ||||||||||||||||||||
Sbjct: 29030 cacaaacacatttgagaagg 29049

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>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence
          Length = 139897

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cacaaacacatttgagaagg 469
             ||||||||||||||||||||
Sbjct: 72059 cacaaacacatttgagaagg 72078

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>emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chromosome X, complete
              sequence
          Length = 214219

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    atgtcagaacttttgaaagc 252
              ||||||||||||||||||||
Sbjct: 160479 atgtcagaacttttgaaagc 160460

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>dbj|AP002531.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region,
             section 4/4, complete sequence
          Length = 156978

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ttttgaaagcataaagtcat 262
             ||||||||||||||||||||
Sbjct: 95814 ttttgaaagcataaagtcat 95833

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>dbj|AB042236.1| Homo sapiens genomic DNA, chromosome 6q21, clone:158K4, complete
             sequence
          Length = 96013

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ttttgaaagcataaagtcat 262
             ||||||||||||||||||||
Sbjct: 34849 ttttgaaagcataaagtcat 34868


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,603,839
Number of Sequences: 3902068
Number of extensions: 6603839
Number of successful extensions: 115918
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115722
Number of HSP's gapped (non-prelim): 190
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result