ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62f23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OPT7_ARATH (O82485) Oligopeptide transporter 7 (AtOPT7) 30 6.9
2YEJ6_SCHPO (O14106) Hypothetical protein C31G5.06 in chromosome I 29 9.0

>OPT7_ARATH (O82485) Oligopeptide transporter 7 (AtOPT7)|
          Length = 766

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = -3

Query: 383 GVLKLAVGGSSGACLRWWNEEQGSCSY*SCPLRSSAPVESKRGSSLEGCKL 231
           GVL     G     L WW  E   C   SCP   +AP     G  +EGC L
Sbjct: 722 GVLLYMCLGLENVSLDWWGNELDGCPLASCP---TAP-----GIIVEGCPL 764



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>YEJ6_SCHPO (O14106) Hypothetical protein C31G5.06 in chromosome I|
          Length = 234

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
 Frame = -2

Query: 498 LLRQVLHKRRRSTQEKKCLNLICSELRSENFHLGIYRRGSFEAGSWWKQWRMSSVVE--- 328
           LL+++   +  STQ     +L C++++     L   RR +   G  W QW +  + +   
Sbjct: 112 LLKEISSLKETSTQN----HLHCNDIKILQDCL---RRPNISNGGIWVQWNLEEINQLKK 164

Query: 327 ---------RRTGIMFILVMPPPFLRS 274
                    R++ I  + ++P PFL+S
Sbjct: 165 FLSFRKLYPRQSFISLLQILPEPFLKS 191


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,531,118
Number of Sequences: 219361
Number of extensions: 1930262
Number of successful extensions: 4843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4842
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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