ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC117262.2| Mus musculus BAC clone RP24-537M7 from 2, complet... 44 0.52
2emb|BX284649.14| Mouse DNA sequence from clone RP23-42M7 on chro... 44 0.52
3gb|AC126679.2| Mus musculus BAC clone RP24-319J7 from chromosome... 42 2.1
4gb|AC127264.4| Mus musculus BAC clone RP24-336J13 from chromosom... 42 2.1
5ref|XM_802921.1| Trypanosoma cruzi strain CL Brener protein kina... 42 2.1
6ref|XM_814879.1| Trypanosoma cruzi strain CL Brener protein kina... 42 2.1
7gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, co... 40 8.1
8ref|XM_589912.2| PREDICTED: Bos taurus similar to olfactory rece... 40 8.1
9gb|AC113987.11| Mus musculus chromosome 9, clone RP24-106M14, co... 40 8.1
10gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, com... 40 8.1
11gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complet... 40 8.1
12ref|XM_814002.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.1
13gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, comple... 40 8.1
14gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Ho... 40 8.1
15emb|AL391499.11| Human DNA sequence from clone RP11-162E8 on chr... 40 8.1
16emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chr... 40 8.1
17gb|AC118757.12| Homo sapiens chromosome 18, clone RP11-905K4, co... 40 8.1
18emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chro... 40 8.1
19dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 8.1
20gb|AC158506.9| Pan troglodytes clone rp43-145f17, complete sequence 40 8.1
21dbj|AK133197.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.1
22gb|AC009051.8| Homo sapiens chromosome 16 clone RP11-238M18, com... 40 8.1
23gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 40 8.1
24gb|AC157591.2| Mus musculus BAC clone RP23-311C13 from chromosom... 40 8.1
25gb|AC074229.53| Mus musculus strain C57BL/6J clone rp23-242n21 m... 40 8.1
26gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, com... 40 8.1
27gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28... 40 8.1
28gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cance... 40 8.1
29gb|AC154578.2| Mus musculus BAC clone RP23-375N17 from 16, compl... 40 8.1
30gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, comple... 40 8.1
31gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, comp... 40 8.1
32gb|AC116724.13| Mus musculus chromosome 15, clone RP23-267E9, co... 40 8.1
33gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, compl... 40 8.1
34emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on ch... 40 8.1
35gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complet... 40 8.1
36emb|AL935331.9| Mouse DNA sequence from clone RP24-264J19 on chr... 40 8.1
37emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chro... 40 8.1
38emb|AL669980.9| Mouse DNA sequence from clone RP23-218C2 on chro... 40 8.1
39gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q... 40 8.1 
>gb|AC117262.2| Mus musculus BAC clone RP24-537M7 from 2, complete sequence
          Length = 156547

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    ttaccaaagaacaaaattgcca 104
             ||||||||||||||||||||||
Sbjct: 44360 ttaccaaagaacaaaattgcca 44381
to top
>emb|BX284649.14| Mouse DNA sequence from clone RP23-42M7 on chromosome 2, complete
             sequence
          Length = 127220

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    ttaccaaagaacaaaattgcca 104
             ||||||||||||||||||||||
Sbjct: 47096 ttaccaaagaacaaaattgcca 47075
to top
>gb|AC126679.2| Mus musculus BAC clone RP24-319J7 from chromosome 19, complete sequence
          Length = 172299

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    atttatgttaccaaagaacaaaatt 100
             |||||||||| ||||||||||||||
Sbjct: 47007 atttatgttatcaaagaacaaaatt 47031
to top
>gb|AC127264.4| Mus musculus BAC clone RP24-336J13 from chromosome 19, complete sequence
          Length = 169256

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 76     atttatgttaccaaagaacaaaatt 100
              |||||||||| ||||||||||||||
Sbjct: 146150 atttatgttatcaaagaacaaaatt 146174
to top
>ref|XM_802921.1| Trypanosoma cruzi strain CL Brener protein kinase
            (Tc00.1047053503953.30) partial mRNA
          Length = 3246

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 348  gccactgcttccaccaactgc 368
            |||||||||||||||||||||
Sbjct: 2570 gccactgcttccaccaactgc 2550
to top
>ref|XM_814879.1| Trypanosoma cruzi strain CL Brener protein kinase
            (Tc00.1047053507063.130) partial mRNA
          Length = 3258

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 348  gccactgcttccaccaactgc 368
            |||||||||||||||||||||
Sbjct: 2579 gccactgcttccaccaactgc 2559
to top
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence
          Length = 219244

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   tactttacagatgatgacag 45
            ||||||||||||||||||||
Sbjct: 1338 tactttacagatgatgacag 1319
to top
>ref|XM_589912.2| PREDICTED: Bos taurus similar to olfactory receptor Olr601
           (LOC512400), mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 556 tttgtggccatctgtgactc 575
           ||||||||||||||||||||
Sbjct: 367 tttgtggccatctgtgactc 386
to top
>gb|AC113987.11| Mus musculus chromosome 9, clone RP24-106M14, complete sequence
          Length = 170828

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    ttgatttgtggccatctgtg 571
              ||||||||||||||||||||
Sbjct: 165082 ttgatttgtggccatctgtg 165101
to top
>gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, complete sequence
          Length = 202894

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    ccaaagaacaaaattgccag 105
             ||||||||||||||||||||
Sbjct: 64053 ccaaagaacaaaattgccag 64072
to top
>gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complete sequence
          Length = 154419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    ttatttttcgacaccctaca 518
              ||||||||||||||||||||
Sbjct: 151993 ttatttttcgacaccctaca 152012
to top
>ref|XM_814002.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506941.194) partial mRNA
          Length = 9627

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gatgacagcaacggaagaaa 57
            ||||||||||||||||||||
Sbjct: 982  gatgacagcaacggaagaaa 1001
to top
>gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, complete sequence
          Length = 194448

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    gagagagaggaagaagggta 125
              ||||||||||||||||||||
Sbjct: 188589 gagagagaggaagaagggta 188570
to top
>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 293757

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    caggagagagaggaagaagg 122
              ||||||||||||||||||||
Sbjct: 286465 caggagagagaggaagaagg 286446
to top
>emb|AL391499.11| Human DNA sequence from clone RP11-162E8 on chromosome 10 Contains part
             of a novel gene (DKFZp761L0424) (KIAA1217), complete
             sequence
          Length = 144750

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ctttacagatgatgacagca 47
             ||||||||||||||||||||
Sbjct: 37692 ctttacagatgatgacagca 37711
to top
>emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chromosome 9 Contains a
              karyopherin alpha 2 (RAG cohort 1, importin alpha 1)
              (KPNA2) pseudogene, complete sequence
          Length = 112031

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     attgccaggagagagaggaa 117
              ||||||||||||||||||||
Sbjct: 102897 attgccaggagagagaggaa 102878
to top
>gb|AC118757.12| Homo sapiens chromosome 18, clone RP11-905K4, complete sequence
          Length = 185308

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   gaacagatcaggttaaggca 447
             ||||||||||||||||||||
Sbjct: 61343 gaacagatcaggttaaggca 61362
to top
>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a
             zinc finger protein pseudogene, a chaperonin subunit 7
             (eta) (Cct7) pseudogene, a novel pseudogene and a CpG
             island, complete sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ggagagagaggaagaagggt 124
             ||||||||||||||||||||
Sbjct: 78890 ggagagagaggaagaagggt 78909
to top
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 579     tgagcctctccaccaccaca 598
               ||||||||||||||||||||
Sbjct: 1108580 tgagcctctccaccaccaca 1108599
to top
>gb|AC158506.9| Pan troglodytes clone rp43-145f17, complete sequence
          Length = 155707

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   aaaagagtactttggacatctcaa 547
             |||| |||||||||||||||||||
Sbjct: 17560 aaaatagtactttggacatctcaa 17583
to top
>dbj|AK133197.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4932411O03 product:unclassifiable, full
            insert sequence
          Length = 3353

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  tgtgactctcctgagcctct 587
            ||||||||||||||||||||
Sbjct: 2820 tgtgactctcctgagcctct 2839
to top
>gb|AC009051.8| Homo sapiens chromosome 16 clone RP11-238M18, complete sequence
          Length = 157691

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ctgcttccaccaactgccag 371
             ||||||||||||||||||||
Sbjct: 29969 ctgcttccaccaactgccag 29950
to top
>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete
             sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tactttacagatgatgacag 45
             ||||||||||||||||||||
Sbjct: 42348 tactttacagatgatgacag 42367
to top
>gb|AC157591.2| Mus musculus BAC clone RP23-311C13 from chromosome 9, complete sequence
          Length = 213461

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 568   tgtgactctcctgagcctct 587
             ||||||||||||||||||||
Sbjct: 81293 tgtgactctcctgagcctct 81312
to top
>gb|AC074229.53| Mus musculus strain C57BL/6J clone rp23-242n21 map 5, complete sequence
          Length = 158661

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 101    gccaggagagagaggaagaagggtaacaggag 132
              ||||||||||| ||||||||||| || |||||
Sbjct: 101101 gccaggagagaaaggaagaaggggaagaggag 101132
to top
>gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, complete sequence
          Length = 235286

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    ctgcttccaccaactgccag 371
              ||||||||||||||||||||
Sbjct: 126772 ctgcttccaccaactgccag 126753
to top
>gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 209932

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    caaaattgccaggagagaga 113
             ||||||||||||||||||||
Sbjct: 47598 caaaattgccaggagagaga 47617
to top
>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147103

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    tttacagatgatgacagcaa 48
             ||||||||||||||||||||
Sbjct: 28870 tttacagatgatgacagcaa 28889
to top
>gb|AC154578.2| Mus musculus BAC clone RP23-375N17 from 16, complete sequence
          Length = 203029

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aggagagagaggaagaaggg 123
              ||||||||||||||||||||
Sbjct: 191581 aggagagagaggaagaaggg 191600
to top
>gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, complete sequence
          Length = 185587

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aggagagagaggaagaaggg 123
              ||||||||||||||||||||
Sbjct: 158592 aggagagagaggaagaaggg 158611
to top
>gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, complete sequence
          Length = 112924

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   ttgatttgtggccatctgtg 571
             ||||||||||||||||||||
Sbjct: 51525 ttgatttgtggccatctgtg 51506
to top
>gb|AC116724.13| Mus musculus chromosome 15, clone RP23-267E9, complete sequence
          Length = 136996

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    gagagagaggaagaagggta 125
              ||||||||||||||||||||
Sbjct: 116552 gagagagaggaagaagggta 116571
to top
>gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, complete sequence
          Length = 173965

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aggagagagaggaagaaggg 123
             ||||||||||||||||||||
Sbjct: 42013 aggagagagaggaagaaggg 42032
to top
>emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on chromosome 16, complete
             sequence
          Length = 238459

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aggagagagaggaagaaggg 123
             ||||||||||||||||||||
Sbjct: 46573 aggagagagaggaagaaggg 46554
to top
>gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complete sequence
          Length = 261825

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    aggagagagaggaagaaggg 123
              ||||||||||||||||||||
Sbjct: 102858 aggagagagaggaagaaggg 102839
to top
>emb|AL935331.9| Mouse DNA sequence from clone RP24-264J19 on chromosome 2, complete
             sequence
          Length = 144436

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   ttgatttgtggccatctgtg 571
             ||||||||||||||||||||
Sbjct: 85749 ttgatttgtggccatctgtg 85768
to top
>emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chromosome 12, complete
             sequence
          Length = 213294

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aggagagagaggaagaaggg 123
             ||||||||||||||||||||
Sbjct: 39982 aggagagagaggaagaaggg 39963
to top
>emb|AL669980.9| Mouse DNA sequence from clone RP23-218C2 on chromosome 4, complete
              sequence
          Length = 157624

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 568    tgtgactctcctgagcctctccac 591
              ||||||||| ||||||||||||||
Sbjct: 133882 tgtgactctgctgagcctctccac 133859
to top
>gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q28, complete sequence
          Length = 198434

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     caaaattgccaggagagaga 113
              ||||||||||||||||||||
Sbjct: 189945 caaaattgccaggagagaga 189964


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,277,735
Number of Sequences: 3902068
Number of extensions: 5277735
Number of successful extensions: 109943
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109862
Number of HSP's gapped (non-prelim): 81
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top