>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 2e-27
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 53.9 bits (128), Expect(2) = 2e-27
 Identities = 25/28 (89%), Positives = 25/28 (89%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL DTYMSQAA GDANQDAMK GSFYG
Sbjct: 400 VQLADTYMSQAALGDANQDAMKTGSFYG 427

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 4e-19
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 261 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 45.4 bits (106), Expect(2) = 4e-19
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL D YMS+AA GDAN DA+K G+FYG
Sbjct: 410 VQLADKYMSEAALGDANNDAIKRGTFYG 437

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 9e-19
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 43.1 bits (100), Expect(2) = 9e-19
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL +TY+SQAA GDAN DA+  G+FYG
Sbjct: 410 VQLAETYLSQAALGDANADAIGRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 5e-17
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 151
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 41.2 bits (95), Expect(2) = 5e-17
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL D YMS AA GDAN+DA+  G+F+G
Sbjct: 408 VQLADQYMSSAALGDANKDAIDRGTFFG 435

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL + Y+S+AA GDAN DAMK GSFYG
Sbjct: 400 VQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL D Y+S+AA GDAN DAM  G+FYG
Sbjct: 410 VQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFYG 306
           VQL D Y+S+AA G AN DAMK G+FYG
Sbjct: 397 VQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSF 312
           VQL D YMS+AA GDANQDA+K G+F
Sbjct: 410 VQLADKYMSEAALGDANQDAIKRGTF 435

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFY 309
           VQL D Y+++AA G+AN+DAMK GSF+
Sbjct: 406 VQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFY 309
           VQL D Y+++AA G+AN+DA+K GSF+
Sbjct: 412 VQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFY 309
           VQL D Y+++AA G+AN+DA+K GSF+
Sbjct: 414 VQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSFY 309
           VQL D Y+ +AA GDAN DA+  GSF+
Sbjct: 414 VQLADKYLKEAALGDANADAINNGSFF 440

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXGSF 312
           VQL +TY+ +AA GDAN DA+  G+F
Sbjct: 414 VQLAETYLKEAALGDANADAINTGNF 439

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 389 VQLXDTYMSQAAXGDANQDAMKXG 318
           VQL +TY+ +AA GDAN DA+  G
Sbjct: 409 VQLAETYLKEAALGDANADAINTG 432

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 162  CRRRSLPLGRSSWHFGRCNLP 224
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4)
          Length = 378

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 315 LLRLENSPYTPTISCCIEGGKGAQQGTLPVPEGCTDQNA 199
           LLRL+N      +S   + G+GA  G+   P GC + N+
Sbjct: 88  LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126

>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)|
           chain)
          Length = 1142

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 327 EXWFLLRLENSPYTPTISCCIEGGKGAQQGTLPVPEG 217
           E WFL ++ N    P IS  ++GGK   +      EG
Sbjct: 115 ERWFLWQVLNQQNIPQISIVVDGGKKVVEFMFQATEG 151

>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 232 ARAGRLHRPKCQELRPNGKERRR 164
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169

>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 228  VPEGCTDQNAKNYDPTARSD 169
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402

>YGFS_ECOLI (Q46819) Putative electron transport protein ygfS|
          Length = 162

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   AXCIGALPMGILNIFRDILTKHAQQSLGCDA 100
           A C+GA P+G L +   ++  ++ + +GC +
Sbjct: 61  APCVGACPVGALTMGEQVVQTNSARCIGCQS 91

>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 114 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 218
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,433,361
Number of Sequences: 219361
Number of extensions: 992402
Number of successful extensions: 2197
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2197
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)