ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 248 2e-67
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 48 2e-05
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 34 0.33
4PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.... 31 2.2
5RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigment... 30 3.7

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  248 bits (634), Expect(2) = 2e-67
 Identities = 115/115 (100%), Positives = 115/115 (100%)
 Frame = -2

Query: 539 GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH 360
           GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH
Sbjct: 254 GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH 313

Query: 359 DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 195
           DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS
Sbjct: 314 DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 368



 Score = 27.3 bits (59), Expect(2) = 2e-67
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 570 QRYRVDIAYFG 538
           QRYRVDIAYFG
Sbjct: 244 QRYRVDIAYFG 254



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>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
 Frame = -2

Query: 542 SGHVHNYERTCPLYQSQCVNA-----DKTHYSGTMNGTIFVVAGGGG-----SHLSSYTT 393
           SGH+H YER  PL  +  ++      + T+Y+        ++ G  G     S  S    
Sbjct: 497 SGHIHWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSITHIINGMAGNIESHSEFSDGEG 556

Query: 392 AIPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTI 261
                ++     YGF+KLT FN ++L +E ++  DG V DS T+
Sbjct: 557 LTNITALLDKVHYGFSKLTIFNETALKWELIRGDDGTVGDSLTL 600



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>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
 Frame = -2

Query: 542 SGHVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVVAGGGGSHLSSYTTAI-- 387
           +GHVH YER+      +  N      +G        +  I++  G GG+     T  +  
Sbjct: 354 AGHVHAYERS-----ERVSNIAYNIVNGLCEPISDESAPIYITIGDGGNSEGLLTDMMQP 408

Query: 386 -PKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 285
            PK+S FR+  +G   L   N +   F + ++ DG
Sbjct: 409 QPKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDG 443



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>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
 Frame = -2

Query: 542 SGHVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVVAGGGGSH---LSSYTTA 390
           +GHVH YER+      +  N      +G        +  +++  G GG+     ++ T  
Sbjct: 348 AGHVHAYERS-----ERVSNVAYNIVNGLCAPVNDKSAPVYITIGDGGTLEGLATNMTEP 402

Query: 389 IPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 285
            PK+S FR+  +G       N +   + + ++ DG
Sbjct: 403 QPKYSAFREASFGHAIFDITNRTHAHYSWHRNQDG 437



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>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2095

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
 Frame = -2

Query: 524  YERTCPLYQ--SQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYG 351
            + ++ PL Q  S  VN ++  + G    T      G     +   T    WS   + + G
Sbjct: 914  HRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTKNDNWSGNTNQETG 973

Query: 350  FTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS*LISSGRH 171
             + +   N   L   + +S +G +YDS+         L  +HD+C  +       S+  H
Sbjct: 974  KSLVAKDNGEELNKHHCESQNGSLYDSY---------LVSLHDNCTLSQTTINEPSTKSH 1024

Query: 170  VNVMEGHPSNKIV 132
            +++ +  P  K+V
Sbjct: 1025 LSIEKSRPEVKLV 1037


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,015,896
Number of Sequences: 219361
Number of extensions: 1283822
Number of successful extensions: 3392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3387
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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