ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC149072.1| x. tropicalis BAC clone ISB1-341L17 containing ge... 40 3.0
2gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complet... 40 3.0
3emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 3.0
4gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, co... 40 3.0

>gb|AC149072.1| x. tropicalis BAC clone ISB1-341L17 containing genes for vex1 and
             vent1, complete sequence
          Length = 65797

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tgctccgaagggcttcaacg 140
             ||||||||||||||||||||
Sbjct: 34317 tgctccgaagggcttcaacg 34298



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>gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complete sequence
          Length = 188794

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cttcaaattttcaagagatg 202
             ||||||||||||||||||||
Sbjct: 30487 cttcaaattttcaagagatg 30506



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     atttctaaccggcccttgct 229
               ||||||||||||||||||||
Sbjct: 2509475 atttctaaccggcccttgct 2509456



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>gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, complete sequence
          Length = 207364

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cttcaaattttcaagagatg 202
             ||||||||||||||||||||
Sbjct: 24357 cttcaaattttcaagagatg 24338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,531,729
Number of Sequences: 3902068
Number of extensions: 1531729
Number of successful extensions: 23699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23691
Number of HSP's gapped (non-prelim): 8
length of query: 232
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 210
effective length of database: 17,147,199,772
effective search space: 3600911952120
effective search space used: 3600911952120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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