Clone Information

BLAST Search Result

Clone Name	rbah62f02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK062241.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	412	e-112
2	dbj\|AK061556.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	412	e-112
3	dbj\|AK073271.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	404	e-109
4	gb\|AY108395.1\| Zea mays PCO142081 mRNA sequence	264	3e-67
5	gb\|AY103604.1\| Zea mays PCO142082 mRNA sequence	264	3e-67
6	gb\|BT017634.1\| Zea mays clone EL01N0437H07.c mRNA sequence	176	5e-41
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	168	1e-38
8	dbj\|AP005382.3\| Oryza sativa (japonica cultivar-group) genomic D...	168	1e-38
9	dbj\|AP004993.3\| Oryza sativa (japonica cultivar-group) genomic D...	168	1e-38
10	ref\|XM_482516.1\| Oryza sativa (japonica cultivar-group), mRNA	90	9e-15
11	dbj\|AK064881.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	9e-15
12	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
13	dbj\|AP003881.3\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
14	dbj\|AK063768.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	3e-11
15	dbj\|AK103728.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	1e-10
16	dbj\|AK103130.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	1e-10
17	gb\|U63530.1\|OSU63530 Oryza sativa osRAD23 mRNA, complete cds	76	1e-10
18	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	8e-09
19	dbj\|AP005722.3\| Oryza sativa (japonica cultivar-group) genomic D...	70	8e-09
20	dbj\|AP005707.3\| Oryza sativa (japonica cultivar-group) genomic D...	70	8e-09
21	gb\|DQ415920.1\| Cleome spinosa clone BAC Cs3, complete sequence	50	0.008
22	gb\|AC120496.2\| Genomic sequence for Sorghum bicolor, clone SBBBc...	46	0.12
23	emb\|BX324153.4\| Zebrafish DNA sequence from clone CH211-160M3 in...	46	0.12
24	ref\|XM_678316.1\| PREDICTED: Danio rerio similar to gonadotropin-...	46	0.12
25	gb\|AY108301.1\| Zea mays PCO104381 mRNA sequence	46	0.12
26	emb\|AL121938.10\|HSDJ167O5 Human DNA sequence from clone RP1-167O...	44	0.48
27	gb\|AY106748.1\| Zea mays PCO104379 mRNA sequence	44	0.48
28	gb\|DQ415922.1\| Cleome spinosa clone BAC Cs1, complete sequence	42	1.9
29	emb\|AL116512.1\|CNS01D8O Botrytis cinerea strain T4 cDNA library	42	1.9
30	ref\|XM_420670.1\| PREDICTED: Gallus gallus similar to Centromeric...	40	7.5
31	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	7.5
32	emb\|CT025709.6\| Mouse DNA sequence from clone RP23-364G1 on chro...	40	7.5
33	ref\|XM_960967.1\| Plasmodium falciparum 3D7 translation initiatio...	40	7.5
34	gb\|AE014830.1\| Plasmodium falciparum 3D7 chromosome 10 section 2...	40	7.5
35	gb\|AC137931.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.5
36	emb\|CR382398.1\| Plasmodium falciparum chromosome 6, complete seq...	40	7.5
37	emb\|AL627272.1\| Salmonella enterica serovar Typhi (Salmonella ty...	40	7.5
38	gb\|AC005476.4\|AC005476 Homo sapiens PAC clone RP1-261D10 from 14...	40	7.5
39	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.5
40	gb\|BC094141.1\| Xenopus laevis hypothetical protein LOC443724, mR...	40	7.5
41	dbj\|AK174836.1\| Ciona intestinalis cDNA, clone:cinc002k05, full ...	40	7.5
42	dbj\|AK174291.1\| Ciona intestinalis cDNA, clone:cicl026f15, full ...	40	7.5
43	dbj\|AB088624.1\| Sedum sarmentosum 18S ribosomal RNA, internal tr...	40	7.5
44	dbj\|AB088623.1\| Sedum lineare 18S ribosomal RNA, internal transc...	40	7.5
45	gb\|BC110710.1\| Xenopus laevis cDNA clone MGC:130707 IMAGE:739336...	40	7.5

>dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E09, full
           insert sequence
          Length = 726

 Score =  412 bits (208), Expect = e-112
 Identities = 348/394 (88%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 162 aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
           |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 493 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 434

                                                                       
Query: 222 tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
           ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 433 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 374

                                                                       
Query: 282 gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 341
           | ||| |||||||| |||||||||||||| ||||||||||||  || |||||||||||| 
Sbjct: 373 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 314

                                                                       
Query: 342 tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 398
              ||||| |||   |||||||| ||||| ||||||   || || ||||| | |||||| 
Sbjct: 313 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 254

                                                                       
Query: 399 accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 458
           ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || 
Sbjct: 253 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 194

                                                                       
Query: 459 ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 518
           ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 193 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 134

                                             
Query: 519 agtgcttggaactgtggaagctgtcgcaatgcat 552
           || ||||||||||||||||| |||||||||||||
Sbjct: 133 agcgcttggaactgtggaagttgtcgcaatgcat 100

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>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full
            insert sequence
          Length = 1567

 Score =  412 bits (208), Expect = e-112
 Identities = 348/394 (88%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                        
Query: 162  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 1361 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1302

                                                                        
Query: 222  tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
            ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 1301 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 1242

                                                                        
Query: 282  gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 341
            | ||| |||||||| |||||||||||||| ||||||||||||  || |||||||||||| 
Sbjct: 1241 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 1182

                                                                        
Query: 342  tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 398
               ||||| |||   |||||||| ||||| ||||||   || || ||||| | |||||| 
Sbjct: 1181 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 1122

                                                                        
Query: 399  accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 458
            ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || 
Sbjct: 1121 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 1062

                                                                        
Query: 459  ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 518
            ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1061 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 1002

                                              
Query: 519  agtgcttggaactgtggaagctgtcgcaatgcat 552
            || ||||||||||||||||| |||||||||||||
Sbjct: 1001 agcgcttggaactgtggaagttgtcgcaatgcat 968

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>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full
            insert sequence
          Length = 1629

 Score =  404 bits (204), Expect = e-109
 Identities = 348/394 (88%), Gaps = 4/394 (1%)
 Strand = Plus / Minus

                                                                        
Query: 162  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 1395 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 1336

                                                                        
Query: 222  tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
            ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 1335 tcttcatccttgttgcatgcgaagaagacctccaa-acgagctcacggttgaaccccatt 1277

                                                                        
Query: 282  gactcaagccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcatt 341
            | ||| |||||||| |||||||||||||| ||||||||||||  || |||||||||||| 
Sbjct: 1276 gcctccagccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcata 1217

                                                                        
Query: 342  tgagctgccagtgcgcctagtatatttccgccagca---ccactctcaggtgtttcattt 398
               ||||| |||   |||||||| ||||| ||||||   || || ||||| | |||||| 
Sbjct: 1216 gcggctgctagttgacctagtatgtttcccccagcagcgccgctatcaggagattcattc 1157

                                                                        
Query: 399  accaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgt 458
            ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||||| || 
Sbjct: 1156 accagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcggattctgc 1097

                                                                        
Query: 459  ttccccagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagc 518
            ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1096 ttcccaagctcttgaagcattggctgcaagatttggggattagcctggaccaatgcaagc 1037

                                              
Query: 519  agtgcttggaactgtggaagctgtcgcaatgcat 552
            || ||||||||||||||||| |||||||||||||
Sbjct: 1036 agcgcttggaactgtggaagttgtcgcaatgcat 1003

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>gb|AY108395.1| Zea mays PCO142081 mRNA sequence
          Length = 1776

 Score =  264 bits (133), Expect = 3e-67
 Identities = 313/373 (83%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 239
            |||||||||||||||||||| |  || |||||||| || || ||||| ||| ||||||||
Sbjct: 1349 tcaaactcgtggccatgatcaaggaggtagttggctgcaagctcttcgtccttgttgcat 1290

                                                                        
Query: 240  gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 299
            |||||||| || || | |||||||||| | ||||| ||||||  ||||||||||||||||
Sbjct: 1289 gcaaagaaaacttctagcacaagctcatggttgaagcccattccctcaagccgctggatg 1230

                                                                        
Query: 300  gcctcccgttcttctggagtaacttgaactgcctgtggcatttgagctgccagtgcgcct 359
            ||||| ||||| ||||| ||||||   || |  || |||||   ||||||||||   |||
Sbjct: 1229 gcctctcgttcctctggggtaactgtcaccgattgcggcatagcagctgccagttgacct 1170

                                                                        
Query: 360  agtatatttccgccagcaccactctcaggtgtttcatttaccaggcggagaaactcagcc 419
            | ||| ||||| |||| ||||| ||| || ||||| || |||| ||||| ||||||||| 
Sbjct: 1169 aatatgtttcctccaggaccaccctccggagtttcgttcaccaagcggacaaactcagct 1110

                                                                        
Query: 420  tgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctcttgaagcatt 479
            ||||||||||||||||| |||||||| ||||| |||||||| || || ||||||||||||
Sbjct: 1109 tgattttcctgaatcaaacgcaggatttgtgggttttgtttgcctagttcttgaagcatt 1050

                                                                        
Query: 480  ggctgtaggatttggggattagcctggaccaatgcaagcagtgcttggaactgtggaagc 539
            ||||| | |||||| |||||||||||||||||   |||||||||||| ||||||||||||
Sbjct: 1049 ggctgcaagatttgaggattagcctggaccaactgaagcagtgcttgaaactgtggaagc 990

                         
Query: 540  tgtcgcaatgcat 552
            |||||||| ||||
Sbjct: 989  tgtcgcaaggcat 977

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>gb|AY103604.1| Zea mays PCO142082 mRNA sequence
          Length = 1672

 Score =  264 bits (133), Expect = 3e-67
 Identities = 313/373 (83%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 239
            |||||||| |||||||||||||  || |||||||| |  || ||||| ||| ||||||||
Sbjct: 1331 tcaaactcatggccatgatccaggaggtagttggctgtaagctcttcgtccttgttgcat 1272

                                                                        
Query: 240  gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 299
            |||||||| || || | |||||||||||| ||||||||||||  ||| ||||||||||| 
Sbjct: 1271 gcaaagaaaacttctagcacaagctcacggttgaaccccattccctcgagccgctggata 1212

                                                                        
Query: 300  gcctcccgttcttctggagtaacttgaactgcctgtggcatttgagctgccagtgcgcct 359
            ||||||||||| ||||| ||||||   |  |  |||||||    ||||||||||   |||
Sbjct: 1211 gcctcccgttcctctggggtaactgtcagcgtttgtggcacagcagctgccagttgacct 1152

                                                                        
Query: 360  agtatatttccgccagcaccactctcaggtgtttcatttaccaggcggagaaactcagcc 419
            ||||| || || |||| ||||| |||||| | |||||| |||| ||||||||||||||| 
Sbjct: 1151 agtatgttccctccaggaccaccctcaggagattcattcaccaagcggagaaactcagct 1092

                                                                        
Query: 420  tgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctcttgaagcatt 479
            ||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 1091 tgattttcctgaatcaaccgcagaatttgtgggttttgtttacctagctcttgaagcatt 1032

                                                                        
Query: 480  ggctgtaggatttggggattagcctggaccaatgcaagcagtgcttggaactgtggaagc 539
            ||||| | |||||| |||||||||||||| ||   ||| |||||||| ||||||||||||
Sbjct: 1031 ggctgcaagatttgaggattagcctggactaactgaaggagtgcttgaaactgtggaagc 972

                         
Query: 540  tgtcgcaatgcat 552
            |||||||| ||||
Sbjct: 971  tgtcgcaaggcat 959

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>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence
          Length = 819

 Score =  176 bits (89), Expect = 5e-41
 Identities = 179/209 (85%)
 Strand = Plus / Plus

                                                                       
Query: 344 agctgccagtgcgcctagtatatttccgccagcaccactctcaggtgtttcatttaccag 403
           ||||||||||   |||||||| || || |||| ||||| |||||| | |||||| |||| 
Sbjct: 377 agctgccagttgacctagtatgttccctccaggaccaccctcaggagattcattcaccaa 436

                                                                       
Query: 404 gcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccc 463
           ||||||||||||||| ||||||||||||||||||||||  || || || |||||||| ||
Sbjct: 437 gcggagaaactcagcttgattttcctgaatcaaccgcaaaatttgggggttttgtttacc 496

                                                                       
Query: 464 cagctcttgaagcattggctgtaggatttggggattagcctggaccaatgcaagcagtgc 523
            |||||||||||||||||||| | |||||| |||||||||||||| ||   ||| |||||
Sbjct: 497 tagctcttgaagcattggctgcaagatttgaggattagcctggactaactgaaggagtgc 556

                                        
Query: 524 ttggaactgtggaagctgtcgcaatgcat 552
           ||| |||||||||||||||||||| ||||
Sbjct: 557 ttgaaactgtggaagctgtcgcaaggcat 585



 Score =  111 bits (56), Expect = 2e-21
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                       
Query: 180 tcaaactcgtggccatgatccaaaagatagttggcagccagttcttcatccctgttgcat 239
           |||||||| ||||| |||||||||||  ||||||| |  || ||||| ||| ||||||||
Sbjct: 213 tcaaactcatggccgtgatccaaaagggagttggctgtaagctcttcgtccttgttgcat 272

                                                                       
Query: 240 gcaaagaagacctccaacacaagctcacgattgaaccccattgactcaagccgctggatg 299
           |||||||| || || | ||||||||||||  |||||||||||  ||| ||||||||||| 
Sbjct: 273 gcaaagaaaacttctagcacaagctcacgggtgaaccccattccctcgagccgctggata 332

                                   
Query: 300 gcctcccgttcttctggagtaact 323
           ||||||||||| ||||| ||||||
Sbjct: 333 gcctcccgttcctctggggtaact 356

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  168 bits (85), Expect = 1e-38
 Identities = 112/121 (92%)
 Strand = Plus / Minus

                                                                           
Query: 162     aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
               |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 8737228 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 8737169

                                                                           
Query: 222     tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
               ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 8737168 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 8737109

                
Query: 282     g 282
               |
Sbjct: 8737108 g 8737108



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                           
Query: 392     ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 451
               |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct: 8736536 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 8736477

                                                 
Query: 452     attttgtttccccagctcttgaagcattggctgt 485
               ||| || ||||| |||||||||||||||||||||
Sbjct: 8736476 attctgcttcccaagctcttgaagcattggctgt 8736443



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                            
Query: 488     gatttggggattagcctggaccaatgcaagcagtgcttggaactg 532
               ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8736325 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 8736281



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                  
Query: 290     ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 340
               |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 8736733 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 8736683

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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1001_B06
          Length = 134810

 Score =  168 bits (85), Expect = 1e-38
 Identities = 112/121 (92%)
 Strand = Plus / Minus

                                                                        
Query: 162  aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
            |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 7549 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 7490

                                                                        
Query: 222  tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
            ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 7489 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 7430

             
Query: 282  g 282
            |
Sbjct: 7429 g 7429



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                        
Query: 392  ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 451
            |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct: 6857 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 6798

                                              
Query: 452  attttgtttccccagctcttgaagcattggctgt 485
            ||| || ||||| |||||||||||||||||||||
Sbjct: 6797 attctgcttcccaagctcttgaagcattggctgt 6764



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                         
Query: 488  gatttggggattagcctggaccaatgcaagcagtgcttggaactg 532
            ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6646 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 6602



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 290  ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 340
            |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 7054 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 7004

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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score =  168 bits (85), Expect = 1e-38
 Identities = 112/121 (92%)
 Strand = Plus / Minus

                                                                          
Query: 162    aacatctattgttgttcctcaaactcgtggccatgatccaaaagatagttggcagccagt 221
              |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 152210 aacacctattgttgatcctcaaactcatggccatgatccaaaagatagttggcagccagc 152151

                                                                          
Query: 222    tcttcatccctgttgcatgcaaagaagacctccaacacaagctcacgattgaaccccatt 281
              ||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct: 152150 tcttcatccttgttgcatgcgaagaagacctccaaaacgagctcacggttgaaccccatt 152091

               
Query: 282    g 282
              |
Sbjct: 152090 g 152090



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                          
Query: 392    ttcatttaccaggcggagaaactcagcctgattttcctgaatcaaccgcaggatctgtgg 451
              |||||| ||||| |||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct: 151518 ttcattcaccagacggagaaattcagcctgattttcctgaatcaaccgcaagatttgcgg 151459

                                                
Query: 452    attttgtttccccagctcttgaagcattggctgt 485
              ||| || ||||| |||||||||||||||||||||
Sbjct: 151458 attctgcttcccaagctcttgaagcattggctgt 151425



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                           
Query: 488    gatttggggattagcctggaccaatgcaagcagtgcttggaactg 532
              ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 151307 gatttggggattagcctggaccaatgcaagcagcgcttggaactg 151263



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 290    ccgctggatggcctcccgttcttctggagtaacttgaactgcctgtggcat 340
              |||||| |||||||||||||| ||||||||||||  || ||||||||||||
Sbjct: 151715 ccgctgaatggcctcccgttcctctggagtaactgtaagtgcctgtggcat 151665

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>ref|XM_482516.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1526

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                        
Query: 411  aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 470
            ||||||||||| |||||||||||||   |||  |||||||||||||||||||||| ||||
Sbjct: 1029 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 970

                                                     
Query: 471  tgaagcattggctgtaggatttggggattagcctggaccaa 511
            |||||||  ||||| || ||||| || |||||||| |||||
Sbjct: 969  tgaagcaaaggctgcagaatttgagggttagcctgcaccaa 929

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>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full
            insert sequence
          Length = 1526

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                        
Query: 411  aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 470
            ||||||||||| |||||||||||||   |||  |||||||||||||||||||||| ||||
Sbjct: 1029 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 970

                                                     
Query: 471  tgaagcattggctgtaggatttggggattagcctggaccaa 511
            |||||||  ||||| || ||||| || |||||||| |||||
Sbjct: 969  tgaagcaaaggctgcagaatttgagggttagcctgcaccaa 929

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 411      aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 470
                ||||||||||| |||||||||||||   |||  |||||||||||||||||||||| ||||
Sbjct: 20793697 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 20793638

                       
Query: 471      tgaagca 477
                |||||||
Sbjct: 20793637 tgaagca 20793631

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>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1124_B05
          Length = 109917

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 411   aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 470
             ||||||||||| |||||||||||||   |||  |||||||||||||||||||||| ||||
Sbjct: 24830 aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 24771

                    
Query: 471   tgaagca 477
             |||||||
Sbjct: 24770 tgaagca 24764

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>dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full
           insert sequence
          Length = 621

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 411 aactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttccccagctct 470
           ||||||||||| |||||||||||||   |||  |||||||||||||||||||||| ||||
Sbjct: 70  aactcagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactct 11

                  
Query: 471 tgaagca 477
           |||||||
Sbjct: 10  tgaagca 4

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>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full
           insert sequence
          Length = 2031

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 406 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
           |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 997 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 938

                                             
Query: 466 gctcttgaagcattggctgtaggatttggggatt 499
             |||||||||| ||||||||  ||||| |||||
Sbjct: 937 attcttgaagcaatggctgtaaaatttgaggatt 904

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>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full
           insert sequence
          Length = 1513

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 406 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
           |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 997 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 938

                                             
Query: 466 gctcttgaagcattggctgtaggatttggggatt 499
             |||||||||| ||||||||  ||||| |||||
Sbjct: 937 attcttgaagcaatggctgtaaaatttgaggatt 904

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>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds
          Length = 1533

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 406 ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
           |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 991 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 932

                                             
Query: 466 gctcttgaagcattggctgtaggatttggggatt 499
             |||||||||| ||||||||  ||||| |||||
Sbjct: 931 attcttgaagcaatggctgtaaaatttgaggatt 898

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                            
Query: 406      ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
                |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 14311582 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 14311523

                                   
Query: 466      gctcttgaagcattggctg 484
                  |||||||||| ||||||
Sbjct: 14311522 attcttgaagcaatggctg 14311504

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>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                          
Query: 406    ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
              |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 128127 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 128068

                                 
Query: 466    gctcttgaagcattggctg 484
                |||||||||| ||||||
Sbjct: 128067 attcttgaagcaatggctg 128049

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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0465E03
          Length = 151206

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 406  ggagaaactcagcctgattttcctgaatcaaccgcaggatctgtggattttgtttcccca 465
            |||| |||||||| || ||||||||||||| | |||  ||||| ||||||||||||||||
Sbjct: 3385 ggaggaactcagcttggttttcctgaatcagctgcaaaatctggggattttgtttcccca 3326

                               
Query: 466  gctcttgaagcattggctg 484
              |||||||||| ||||||
Sbjct: 3325 attcttgaagcaatggctg 3307

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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 203    aagatagttggcagccagttcttcatccctgttgcatgcaaagaagacctcca 255
              |||||||||||||||||| || || | | |||||||||| ||||| |||||||
Sbjct: 128966 aagatagttggcagccagctcctcgttcttgttgcatgcgaagaacacctcca 129018



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 446    ctgtggattttgtttccccagctcttgaagcattggctgt 485
              |||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 129395 ctgtggattttgcttccccagctcctgtagcataggctgt 129434

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>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
              sequence
          Length = 120132

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 450    ggattttgtttccccagctcttgaagcattggctg 484
              ||||||||||||||||  |||||||||| ||||||
Sbjct: 108144 ggattttgtttccccaattcttgaagcaatggctg 108178

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>emb|BX324153.4| Zebrafish DNA sequence from clone CH211-160M3 in linkage group 7,
             complete sequence
          Length = 95870

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 174   tgttcctcaaactcgtggccatg 196
             |||||||||||||||||||||||
Sbjct: 18296 tgttcctcaaactcgtggccatg 18318

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>ref|XM_678316.1| PREDICTED: Danio rerio similar to gonadotropin-releasing hormone
           receptor (LOC555723), mRNA
          Length = 1281

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 174 tgttcctcaaactcgtggccatg 196
           |||||||||||||||||||||||
Sbjct: 362 tgttcctcaaactcgtggccatg 384

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>gb|AY108301.1| Zea mays PCO104381 mRNA sequence
          Length = 1521

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 450  ggattttgtttccccagctcttgaagcattggctgtaggatttggggattagcctggacc 509
            ||||||||||| ||||  |||||||||| |||||| |  || || ||||||||||| |||
Sbjct: 1006 ggattttgtttacccaattcttgaagcaatggctgcaaaatctgaggattagcctgcacc 947

                       
Query: 510  aatgcaagcag 520
            ||  |||||||
Sbjct: 946  aaaccaagcag 936

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>emb|AL121938.10|HSDJ167O5 Human DNA sequence from clone RP1-167O5 on chromosome 6q22.1-23.3
             Contains the 3' end of the TPD52L1 gene encoding two
             variants of tumor protein D52-like 1 protein, the gene for
             CGI-130 protein and a CpG island, complete sequence
          Length = 156054

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 473   aagcattggctgtaggatttggggat 498
             ||||||||||| ||||||||||||||
Sbjct: 33386 aagcattggctttaggatttggggat 33411

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>gb|AY106748.1| Zea mays PCO104379 mRNA sequence
          Length = 779

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 450 ggattttgtttccccagctcttgaagcattggctgtaggatttggggattagcctggacc 509
           ||||||||||||| ||  |||||||||| |||||| |  ||||| || |||||||| |||
Sbjct: 260 ggattttgtttcctcaattcttgaagcaatggctgcaaaatttgagggttagcctgaacc 201

             
Query: 510 aa 511
           ||
Sbjct: 200 aa 199

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>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence
          Length = 146078

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 203    aagatagttggcagccagttcttcatccctgttgcatgcaaagaagacctccaacac 259
              ||||||||| |||||||  ||||| | | ||||||| || ||||| |||||||||||
Sbjct: 128332 aagatagttagcagccaactcttcgttcttgttgcacgcgaagaacacctccaacac 128388

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>emb|AL116512.1|CNS01D8O Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 208 agttggcagccagttcttcatccctgttgcatgcaaa 244
           |||||||||||| |||||||| | ||| |||||||||
Sbjct: 352 agttggcagccaattcttcattcttgtcgcatgcaaa 316

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>ref|XM_420670.1| PREDICTED: Gallus gallus similar to Centromeric protein E (CENP-E
            protein) (LOC422716), mRNA
          Length = 7502

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 456  tgtttccccagctcttgaag 475
            ||||||||||||||||||||
Sbjct: 4547 tgtttccccagctcttgaag 4528

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 79       atattcagcagcaagatataagaa 102
                |||||||| |||||||||||||||
Sbjct: 10441366 atattcagaagcaagatataagaa 10441389

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>emb|CT025709.6| Mouse DNA sequence from clone RP23-364G1 on chromosome 17, complete
             sequence
          Length = 162359

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   tgtaggatttggggattagc 502
             ||||||||||||||||||||
Sbjct: 29516 tgtaggatttggggattagc 29497

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>ref|XM_960967.1| Plasmodium falciparum 3D7 translation initiation factor IF-2
            (PFF0345w) partial mRNA
          Length = 2934

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  taacatctattgttgttcct 180
            ||||||||||||||||||||
Sbjct: 1906 taacatctattgttgttcct 1887

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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 201    aaaagatagttggcagccagttcttcat 228
              ||||||||||| ||||||| ||||||||
Sbjct: 200273 aaaagatagtttgcagccatttcttcat 200246

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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    atattcagcagcaagatataagaa 102
             |||||||| |||||||||||||||
Sbjct: 97919 atattcagaagcaagatataagaa 97942

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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    taacatctattgttgttcct 180
              ||||||||||||||||||||
Sbjct: 295765 taacatctattgttgttcct 295746

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>emb|AL627272.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 8/20
          Length = 245050

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 417    gcctgattttcctgaatcaaccgc 440
              ||||||||||| ||||||||||||
Sbjct: 118555 gcctgattttcatgaatcaaccgc 118578

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>gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14q24.3, complete sequence
          Length = 107731

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     taatatgtacttaaaaagga 20
             ||||||||||||||||||||
Sbjct: 10061 taatatgtacttaaaaagga 10080

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 79       atattcagcagcaagatataagaa 102
                |||||||| |||||||||||||||
Sbjct: 10439467 atattcagaagcaagatataagaa 10439490

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>gb|BC094141.1| Xenopus laevis hypothetical protein LOC443724, mRNA (cDNA clone
            MGC:114746 IMAGE:7010023), complete cds
          Length = 3983

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tggcagccagttcttcatcc 230
            ||||||||||||||||||||
Sbjct: 3830 tggcagccagttcttcatcc 3849

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>dbj|AK174836.1| Ciona intestinalis cDNA, clone:cinc002k05, full insert sequence
          Length = 1713

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 307  gttcttctggagtaacttgaactg 330
            ||||||| ||||||||||||||||
Sbjct: 1071 gttcttcaggagtaacttgaactg 1048

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>dbj|AK174291.1| Ciona intestinalis cDNA, clone:cicl026f15, full insert sequence
          Length = 2985

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 307  gttcttctggagtaacttgaactg 330
            ||||||| ||||||||||||||||
Sbjct: 2528 gttcttcaggagtaacttgaactg 2505

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>dbj|AB088624.1| Sedum sarmentosum 18S ribosomal RNA, internal transcribed spacer 1,
           5.8S ribosomal RNA, internal transcribed spacer 2, 28S
           ribosomal RNA, partial and complete sequence
          Length = 677

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  tggcaagtagtagtgatatt 83
           ||||||||||||||||||||
Sbjct: 121 tggcaagtagtagtgatatt 140

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>dbj|AB088623.1| Sedum lineare 18S ribosomal RNA, internal transcribed spacer 1,
           5.8S ribosomal RNA, internal transcribed spacer 2, 28S
           ribosomal RNA, partial and complete sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  tggcaagtagtagtgatatt 83
           ||||||||||||||||||||
Sbjct: 121 tggcaagtagtagtgatatt 140

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>gb|BC110710.1| Xenopus laevis cDNA clone MGC:130707 IMAGE:7393366, complete cds
          Length = 3982

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tggcagccagttcttcatcc 230
            ||||||||||||||||||||
Sbjct: 3831 tggcagccagttcttcatcc 3850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,060,339
Number of Sequences: 3902068
Number of extensions: 5060339
Number of successful extensions: 102679
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102481
Number of HSP's gapped (non-prelim): 192
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

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