Clone Name | rbah61p21 |
---|---|
Clone Library Name | barley_pub |
>gb|AY104824.1| Zea mays PCO117330 mRNA sequence Length = 1365 Score = 260 bits (131), Expect = 4e-66 Identities = 283/334 (84%) Strand = Plus / Minus Query: 132 tctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgtaacacaacg 191 ||||||| || |||||||||| ||| ||||| ||||| || | |||||| |||| || Sbjct: 1042 tctaccacgcgaatgaaggcagaacataagaagggtacgatccgtgcttgctgcacagcg 983 Query: 192 cactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagttcagccgcat 251 ||||| || || || ||||||||||||| |||||| | ||||||||||| |||||| Sbjct: 982 aactgacagcatcctccccagcagtttctccaaattcaccgagtccaagttcgtccgcat 923 Query: 252 ggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctttgatgtcgt 311 ||| ||||||||||| |||||| |||||||| |||| | |||| || ||||||||||||| Sbjct: 922 ggacccctccagtgacgaacgcggatgccatccctgacgcattggctcctttgatgtcgt 863 Query: 312 ggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgctaagcacattg 371 ||||||||||||| ||||| |||| ||||| | || ||||| || |||| | |||| | Sbjct: 862 ggtgcagcgaatcacccaccatgatacattcacgggcatcaacgcccgctagggacatcg 803 Query: 372 ctgatgtatagataaccttatcaggcttccccatccactttacttcaccaccaagantct 431 ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 802 ctgatgtatagatcaccttatcaggcttccccatccatttcacttcaccaccaagactct 743 Query: 432 catattttgctgccagagtgccaggcatgacacg 465 ||||||| |||||||||||||||||||||||||| Sbjct: 742 catatttagctgccagagtgccaggcatgacacg 709
>ref|XM_483593.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1457 Score = 188 bits (95), Expect = 1e-44 Identities = 283/346 (81%) Strand = Plus / Minus Query: 123 taccgtgtttctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgt 182 |||||||||||||||||| ||||||||||||||| || | || || |||| ||||||| Sbjct: 1038 taccgtgtttctaccatgtaaatgaaggcaaaacataggtgggataggagccatgcttgc 979 Query: 183 aacacaacgcactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagtt 242 ||||| | | ||||||||| || ||||| |||||| | ||| |||||||||| Sbjct: 978 ggcacaatgaatcgatggcgtcctctccagcgatttctccaatctcattgagtccaagtt 919 Query: 243 cagccgcatggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctt 302 ||| ||||| ||||||||||| ||||| ||||| || | || | | ||||| |||| Sbjct: 918 cagttgcatgaatccctccagtaatgaatgcagaagcgactctagatgcgtttgcacctt 859 Query: 303 tgatgtcgtggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgcta 362 |||||||||||||||| ||||| || || ||||| ||||| || | | ||| ||||| | Sbjct: 858 tgatgtcgtggtgcagtgaatcacctactgtgatacattcatgaggattaacccctgcca 799 Query: 363 agcacattgctgatgtatagataaccttatcaggcttccccatccactttacttcaccac 422 | ||||||||||||||||||| ||||||||||||||||||||||| || || ||||||| Sbjct: 798 gggacattgctgatgtatagatcaccttatcaggcttccccatccatttcacctcaccac 739 Query: 423 caagantctcatattttgctgccagagtgccaggcatgacacgcag 468 ||||| |||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 738 caagactctcgtatttggctgccagagtgccaggcatgactcgcag 693
>dbj|AK121886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105A03, full insert sequence Length = 1451 Score = 188 bits (95), Expect = 1e-44 Identities = 283/346 (81%) Strand = Plus / Minus Query: 123 taccgtgtttctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgt 182 |||||||||||||||||| ||||||||||||||| || | || || |||| ||||||| Sbjct: 1032 taccgtgtttctaccatgtaaatgaaggcaaaacataggtgggataggagccatgcttgc 973 Query: 183 aacacaacgcactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagtt 242 ||||| | | ||||||||| || ||||| |||||| | ||| |||||||||| Sbjct: 972 ggcacaatgaatcgatggcgtcctctccagcgatttctccaatctcattgagtccaagtt 913 Query: 243 cagccgcatggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctt 302 ||| ||||| ||||||||||| ||||| ||||| || | || | | ||||| |||| Sbjct: 912 cagttgcatgaatccctccagtaatgaatgcagaagcgactctagatgcgtttgcacctt 853 Query: 303 tgatgtcgtggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgcta 362 |||||||||||||||| ||||| || || ||||| ||||| || | | ||| ||||| | Sbjct: 852 tgatgtcgtggtgcagtgaatcacctactgtgatacattcatgaggattaacccctgcca 793 Query: 363 agcacattgctgatgtatagataaccttatcaggcttccccatccactttacttcaccac 422 | ||||||||||||||||||| ||||||||||||||||||||||| || || ||||||| Sbjct: 792 gggacattgctgatgtatagatcaccttatcaggcttccccatccatttcacctcaccac 733 Query: 423 caagantctcatattttgctgccagagtgccaggcatgacacgcag 468 ||||| |||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 732 caagactctcgtatttggctgccagagtgccaggcatgactcgcag 687
>dbj|AK058496.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E11, full insert sequence Length = 1457 Score = 188 bits (95), Expect = 1e-44 Identities = 283/346 (81%) Strand = Plus / Minus Query: 123 taccgtgtttctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgt 182 |||||||||||||||||| ||||||||||||||| || | || || |||| ||||||| Sbjct: 1038 taccgtgtttctaccatgtaaatgaaggcaaaacataggtgggataggagccatgcttgc 979 Query: 183 aacacaacgcactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagtt 242 ||||| | | ||||||||| || ||||| |||||| | ||| |||||||||| Sbjct: 978 ggcacaatgaatcgatggcgtcctctccagcgatttctccaatctcattgagtccaagtt 919 Query: 243 cagccgcatggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctt 302 ||| ||||| ||||||||||| ||||| ||||| || | || | | ||||| |||| Sbjct: 918 cagttgcatgaatccctccagtaatgaatgcagaagcgactctagatgcgtttgcacctt 859 Query: 303 tgatgtcgtggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgcta 362 |||||||||||||||| ||||| || || ||||| ||||| || | | ||| ||||| | Sbjct: 858 tgatgtcgtggtgcagtgaatcacctactgtgatacattcatgaggattaacccctgcca 799 Query: 363 agcacattgctgatgtatagataaccttatcaggcttccccatccactttacttcaccac 422 | ||||||||||||||||||| ||||||||||||||||||||||| || || ||||||| Sbjct: 798 gggacattgctgatgtatagatcaccttatcaggcttccccatccatttcacctcaccac 739 Query: 423 caagantctcatattttgctgccagagtgccaggcatgacacgcag 468 ||||| |||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 738 caagactctcgtatttggctgccagagtgccaggcatgactcgcag 693
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 8e-15 Identities = 62/68 (91%) Strand = Plus / Minus Query: 386 accttatcaggcttccccatccactttacttcaccaccaagantctcatattttgctgcc 445 ||||||||||||||||||||||| || || |||||||||||| |||| ||||| |||||| Sbjct: 27136795 accttatcaggcttccccatccatttcacctcaccaccaagactctcgtatttggctgcc 27136736 Query: 446 agagtgcc 453 |||||||| Sbjct: 27136735 agagtgcc 27136728 Score = 85.7 bits (43), Expect = 1e-13 Identities = 211/267 (79%) Strand = Plus / Minus Query: 123 taccgtgtttctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgt 182 |||||||||||||||||| ||||||||||||||| || | || || |||| ||||||| Sbjct: 27137303 taccgtgtttctaccatgtaaatgaaggcaaaacataggtgggataggagccatgcttgc 27137244 Query: 183 aacacaacgcactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagtt 242 ||||| | | ||||||||| || ||||| |||||| | ||| |||||||||| Sbjct: 27137243 ggcacaatgaatcgatggcgtcctctccagcgatttctccaatctcattgagtccaagtt 27137184 Query: 243 cagccgcatggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctt 302 ||| ||||| ||||||||||| ||||| ||||| || | || | | ||||| |||| Sbjct: 27137183 cagttgcatgaatccctccagtaatgaatgcagaagcgactctagatgcgtttgcacctt 27137124 Query: 303 tgatgtcgtggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgcta 362 |||||||||||||||| ||||| || || ||||| ||||| || | | ||| ||||| | Sbjct: 27137123 tgatgtcgtggtgcagtgaatcacctactgtgatacattcatgaggattaacccctgcca 27137064 Query: 363 agcacattgctgatgtatagataacct 389 | ||||||||||||||||||| |||| Sbjct: 27137063 gggacattgctgatgtatagatcacct 27137037
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1521_G02 Length = 117964 Score = 89.7 bits (45), Expect = 8e-15 Identities = 62/68 (91%) Strand = Plus / Minus Query: 386 accttatcaggcttccccatccactttacttcaccaccaagantctcatattttgctgcc 445 ||||||||||||||||||||||| || || |||||||||||| |||| ||||| |||||| Sbjct: 37828 accttatcaggcttccccatccatttcacctcaccaccaagactctcgtatttggctgcc 37769 Query: 446 agagtgcc 453 |||||||| Sbjct: 37768 agagtgcc 37761 Score = 85.7 bits (43), Expect = 1e-13 Identities = 211/267 (79%) Strand = Plus / Minus Query: 123 taccgtgtttctaccatgcaaatgaaggcaaaacgtaagatgggtatgagctatgcttgt 182 |||||||||||||||||| ||||||||||||||| || | || || |||| ||||||| Sbjct: 38336 taccgtgtttctaccatgtaaatgaaggcaaaacataggtgggataggagccatgcttgc 38277 Query: 183 aacacaacgcactgatggcgtcatcaccagcagtttctctgaattcaactagtccaagtt 242 ||||| | | ||||||||| || ||||| |||||| | ||| |||||||||| Sbjct: 38276 ggcacaatgaatcgatggcgtcctctccagcgatttctccaatctcattgagtccaagtt 38217 Query: 243 cagccgcatggatccctccagtgatgaacgcagatgccattcctgccccatttgcgcctt 302 ||| ||||| ||||||||||| ||||| ||||| || | || | | ||||| |||| Sbjct: 38216 cagttgcatgaatccctccagtaatgaatgcagaagcgactctagatgcgtttgcacctt 38157 Query: 303 tgatgtcgtggtgcagcgaatctcccacggtgatgcattcgtgtgcttcaacacctgcta 362 |||||||||||||||| ||||| || || ||||| ||||| || | | ||| ||||| | Sbjct: 38156 tgatgtcgtggtgcagtgaatcacctactgtgatacattcatgaggattaacccctgcca 38097 Query: 363 agcacattgctgatgtatagataacct 389 | ||||||||||||||||||| |||| Sbjct: 38096 gggacattgctgatgtatagatcacct 38070
>gb|BT014262.1| Lycopersicon esculentum clone 133484F, mRNA sequence Length = 1372 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 233 agtccaagttcagccgcatggatccctccagtgatgaacgcagatgccattcctgcccca 292 |||||||||||||| ||||| || || || ||||| ||||| || || ||||| || || Sbjct: 1126 agtccaagttcagcagcatgtattccgcctgtgataaacgctgaagcaattccagctaca 1067 Query: 293 tttgcgcctttgatgtcgtggtg 315 |||||||||||||| || ||||| Sbjct: 1066 tttgcgcctttgatatcatggtg 1044
>gb|AC135605.25| Medicago truncatula clone mth2-7m1, complete sequence Length = 121648 Score = 48.1 bits (24), Expect = 0.026 Identities = 50/59 (84%) Strand = Plus / Minus Query: 386 accttatcaggcttccccatccactttacttcaccaccaagantctcatattttgctgc 444 |||| |||||| || |||||||| ||||||||||| ||||| | |||||||| ||||| Sbjct: 59480 acctcatcaggtttgcccatccattttacttcacccccaagcttttcatatttagctgc 59422 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 233 agtccaagttcagccgcatggatccctccagtgat 267 ||||||||||||| ||||| |||||||||||||| Sbjct: 54699 agtccaagttcagttgcatgaatccctccagtgat 54665 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 agtccaagttcagccgcatggatccctcc 261 |||||||||||||| ||||| |||||||| Sbjct: 59841 agtccaagttcagctgcatgaatccctcc 59813
>gb|AC124964.17| Medicago truncatula clone mth2-27c4, complete sequence Length = 114519 Score = 48.1 bits (24), Expect = 0.026 Identities = 50/59 (84%) Strand = Plus / Plus Query: 386 accttatcaggcttccccatccactttacttcaccaccaagantctcatattttgctgc 444 |||| |||||| || |||||||| ||||||||||| ||||| | |||||||| ||||| Sbjct: 60409 acctcatcaggtttgcccatccattttacttcacccccaagcttttcatatttagctgc 60467 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 233 agtccaagttcagccgcatggatccctccagtgat 267 ||||||||||||| ||||| |||||||||||||| Sbjct: 65190 agtccaagttcagttgcatgaatccctccagtgat 65224 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 233 agtccaagttcagccgcatggatccctcc 261 |||||||||||||| ||||| |||||||| Sbjct: 60048 agtccaagttcagctgcatgaatccctcc 60076
>gb|AF119372.1|AF119372 Picea rubens clone 61a4 internal transcribed spacer 1, partial sequence Length = 777 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 atccctccagtgatgaacgca 274 ||||||||||||||||||||| Sbjct: 546 atccctccagtgatgaacgca 526
>gb|AC140471.2| Mus musculus BAC clone RP24-400H5 from chromosome 19, complete sequence Length = 185153 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 ttctaccatgcaaatgaaggcaaa 154 |||||||||||||||| ||||||| Sbjct: 166027 ttctaccatgcaaatgcaggcaaa 166050
>ref|XM_532285.2| PREDICTED: Canis familiaris similar to ankyrin repeat domain 46, transcript variant 1 (LOC475050), mRNA Length = 879 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ccagcagtttctctgaattc 228 |||||||||||||||||||| Sbjct: 60 ccagcagtttctctgaattc 41
>gb|AC132419.3| Mus musculus BAC clone RP23-252B17 from chromosome 18, complete sequence Length = 190421 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gcgtcatcaccagcagtttc 219 |||||||||||||||||||| Sbjct: 10763 gcgtcatcaccagcagtttc 10744
>gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome 18, complete sequence Length = 244566 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgtcatcaccagcagtttc 219 |||||||||||||||||||| Sbjct: 14396 gcgtcatcaccagcagtttc 14415
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 aaaacacataacactaacaattta 42 ||||||||||||| |||||||||| Sbjct: 94240 aaaacacataacaataacaattta 94263
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ttcctgccccatttgcgcct 301 |||||||||||||||||||| Sbjct: 1926872 ttcctgccccatttgcgcct 1926891
>gb|AC098821.3| Homo sapiens BAC clone RP11-331F12 from 4, complete sequence Length = 80845 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctctctttgacaattcaaaa 76 |||||||||||||||||||| Sbjct: 54532 ctctctttgacaattcaaaa 54551
>gb|DQ145698.1| Nematoda sp. SAN-2005 28S ribosomal RNA gene, partial sequence Length = 1622 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aactagtccaagttcagccg 248 |||||||||||||||||||| Sbjct: 790 aactagtccaagttcagccg 771
>gb|AY017473.1| Glycine max ferredoxin:sulfite reductase precursor (sir) mRNA, partial cds; nuclear gene for chloroplast product Length = 1801 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 caactagtccaagttcagcc 247 |||||||||||||||||||| Sbjct: 1755 caactagtccaagttcagcc 1736
>gb|AF291686.3|AF291686 Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 4, complete sequence Length = 3311 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 attaaacggtgtaccgtgtttcta 135 |||||| ||||||||||||||||| Sbjct: 1030 attaaaaggtgtaccgtgtttcta 1053
>gb|AC171276.3| Pan troglodytes BAC clone CH251-740N2 from chromosome unknown, complete sequence Length = 202258 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ctctctttgacaattcaaaa 76 |||||||||||||||||||| Sbjct: 115456 ctctctttgacaattcaaaa 115437
>gb|AF111105.1|AF111105 Homo sapiens mitogen-activated protein kinase kinase kinase MEKK2 mRNA, complete cds Length = 2133 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 atttgcgcctttgatgtcgtggtg 315 ||||||||||||||||||| |||| Sbjct: 1562 atttgcgcctttgatgtcgcggtg 1539
>gb|AC123621.10| Mus musculus chromosome 19, clone RP23-74D13, complete sequence Length = 197720 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ttctaccatgcaaatgaaggcaaa 154 |||||||||||||||| ||||||| Sbjct: 156048 ttctaccatgcaaatgcaggcaaa 156025
>emb|AL929146.10| Zebrafish DNA sequence from clone CH211-117A23, complete sequence Length = 169102 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 cttcaacacctgctaagcacattg 371 ||||||||| |||||||||||||| Sbjct: 26728 cttcaacacttgctaagcacattg 26751
>gb|AF071890.1|AF071890 Prunus armeniaca sulfite reductase (SULRED) mRNA, partial cds Length = 1425 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 caactagtccaagttcagcc 247 |||||||||||||||||||| Sbjct: 692 caactagtccaagttcagcc 673
>gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 186393 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ctctctttgacaattcaaaa 76 |||||||||||||||||||| Sbjct: 123852 ctctctttgacaattcaaaa 123833 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,622,807 Number of Sequences: 3902068 Number of extensions: 3622807 Number of successful extensions: 61735 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61645 Number of HSP's gapped (non-prelim): 85 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)