ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STT7_ARATH (Q9S713) Serine/threonine-protein kinase SNT7, chloro... 57 1e-08
2DEAD_HAEIN (P44586) Cold-shock DEAD box protein A homolog (EC 3.... 30 2.0

>STT7_ARATH (Q9S713) Serine/threonine-protein kinase SNT7, chloroplast|
           precursor (EC 2.7.11.1) (Stt7 homolog)
          Length = 562

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -2

Query: 335 RNVLASXLRVXRKXVRTISESMDELXSQRXSIWWXRWIPKXE 210
           RN LAS LR+ RK V+T++E++DE+   R ++WW RWIP+ E
Sbjct: 521 RNALASALRLQRKLVKTVTETIDEISDGRKTVWWNRWIPREE 562



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>DEAD_HAEIN (P44586) Cold-shock DEAD box protein A homolog (EC 3.6.1.-)|
           (ATP-dependent RNA helicase deaD homolog)
          Length = 613

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 145 GNDISHLLLSTAGEGEVVSTYLSMGKHYDKYTYIWI-YGMKK 23
           G ++ H++ + A EG++ S Y+   K YD YT + +  GM K
Sbjct: 488 GVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPK 529


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,327,304
Number of Sequences: 219361
Number of extensions: 584342
Number of successful extensions: 1216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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