Clone Name | rbah61p18 |
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Clone Library Name | barley_pub |
>MKS1_HUMAN (Q9NXB0) Meckel syndrome type 1 protein| Length = 559 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +1 Query: 109 AVMYSRQTQSRSLRTKLTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSRRTSPS 282 A M S Q R +R+ L R G S+ SS VL+ +R R+R+ L SPS Sbjct: 498 AFMESSSLQKR-MRSVLDRLEGFSQQSSIHNVLEAFRRARRRMQEARESLPQDLVSPS 554
>DXS_RHIME (Q92RJ1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 645 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432 N+ N GPV + + KG+ P + A + F +T A+ + PN S A Sbjct: 273 NVRDNAKGPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQAKAKPNAPAYTSVFA 332 Query: 431 DA 426 DA Sbjct: 333 DA 334
>DXS_AGRT5 (Q8UHD7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 639 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -2 Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432 N+ N GPV + + KG+ P + A + F +T A+ + PN + S A Sbjct: 268 NVRDNQKGPVLIHVVTQKGKGYAPAEAAADKYHGVNKFDVITGAQAKAKPNAPSYTSVFA 327 Query: 431 DA 426 +A Sbjct: 328 EA 329
>ATG2_YEAST (P53855) Autophagy-related protein 2 (Sporulation-specific protein| 72) Length = 1592 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -3 Query: 136 FVFA*STSRHVWGHVTSKKLVLEETLYPPFGSXEALLXN 20 FV+ S S + + S KL + E + P FGS EALL N Sbjct: 638 FVYKQSLSANFSLKIDSMKLKVSEIIGPQFGSVEALLSN 676
>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor| (Polymorphic membrane protein C) Length = 1770 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/59 (27%), Positives = 24/59 (40%) Frame = -2 Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGS 435 N H G + +N SL + +A ++ FTDL S + P +T S S Sbjct: 400 NTAKGHGGGICTNKLSLSNLKTVTLTKNSAKESGGAIFTDLASIPITDTPESSTPSSSS 458
>OPS4_CANAL (P46596) Opaque-phase-specific protein OP4 precursor| Length = 402 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -2 Query: 524 ALDNQTKPFTDLTSAELNSPPNGTTVVSGSADAQKAAS 411 AL N T +D+ +A +S P GTT S + A KAA+ Sbjct: 290 ALSNGTITASDINNAGSSSKPTGTTTASTATAAPKAAT 327
>MKS1_MOUSE (Q5SW45) Meckel syndrome type 1 protein homolog| Length = 561 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 109 AVMYSRQTQSRSLRTKLTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSRRTSPS 282 A M S Q + +R+ L R G S+ SS VL+ +R R+R+ L SP+ Sbjct: 501 AFMESNSLQ-KQMRSVLDRLEGFSQQSSTHNVLEAFRRARRRMQEARESLPQDLVSPT 557
>MKS1_RAT (Q499Q5) Meckel syndrome type 1 protein homolog| Length = 561 Score = 29.3 bits (64), Expect = 9.5 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +1 Query: 103 IHAVMYSRQ-TQSRSLRTK----LTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSR 267 +H + SR +S SLR + L R G S+ SS VL+ +R R+R+ L Sbjct: 493 LHCLQQSRAFMESNSLRKQMRSVLDRLEGFSQQSSTHNVLEAFRRARRRMQEARESLPQD 552 Query: 268 RTSPS 282 SP+ Sbjct: 553 LVSPT 557
>VTS1_CANAL (Q5AI80) Protein VTS1| Length = 679 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -2 Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432 N ++N++G NS KG H++ +NS P + ++ + ++ N TT +G A Sbjct: 538 NNSNNNSGNTNINSNQNKGTHKKKINS---------PTSAVSMQQNSTSVNSTTSGNGGA 588 Query: 431 DA 426 +A Sbjct: 589 NA 590
>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = -2 Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSP----PNGTTVV 444 N T NH P + S+KG + VN + P L +E +P NG + Sbjct: 579 NETINHIIPNGKSEDSIKGLQPEDVNLLVTCREEGNPVASLGHSEAETPVDAYSNGQAAL 638 Query: 443 SGSADAQK 420 G + +K Sbjct: 639 MGEKERKK 646 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,691,872 Number of Sequences: 219361 Number of extensions: 1780691 Number of successful extensions: 4488 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4486 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)