>MKS1_HUMAN (Q9NXB0) Meckel syndrome type 1 protein|
          Length = 559

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +1

Query: 109 AVMYSRQTQSRSLRTKLTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSRRTSPS 282
           A M S   Q R +R+ L R  G S+ SS   VL+ +R  R+R+      L     SPS
Sbjct: 498 AFMESSSLQKR-MRSVLDRLEGFSQQSSIHNVLEAFRRARRRMQEARESLPQDLVSPS 554

>DXS_RHIME (Q92RJ1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 645

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432
           N+  N  GPV  +  + KG+   P  + A   +    F  +T A+  + PN     S  A
Sbjct: 273 NVRDNAKGPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQAKAKPNAPAYTSVFA 332

Query: 431 DA 426
           DA
Sbjct: 333 DA 334

>DXS_AGRT5 (Q8UHD7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 639

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -2

Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432
           N+  N  GPV  +  + KG+   P  + A   +    F  +T A+  + PN  +  S  A
Sbjct: 268 NVRDNQKGPVLIHVVTQKGKGYAPAEAAADKYHGVNKFDVITGAQAKAKPNAPSYTSVFA 327

Query: 431 DA 426
           +A
Sbjct: 328 EA 329

>ATG2_YEAST (P53855) Autophagy-related protein 2 (Sporulation-specific protein|
           72)
          Length = 1592

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 136 FVFA*STSRHVWGHVTSKKLVLEETLYPPFGSXEALLXN 20
           FV+  S S +    + S KL + E + P FGS EALL N
Sbjct: 638 FVYKQSLSANFSLKIDSMKLKVSEIIGPQFGSVEALLSN 676

>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor|
           (Polymorphic membrane protein C)
          Length = 1770

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -2

Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGS 435
           N    H G + +N  SL       +   +A ++    FTDL S  +   P  +T  S S
Sbjct: 400 NTAKGHGGGICTNKLSLSNLKTVTLTKNSAKESGGAIFTDLASIPITDTPESSTPSSSS 458

>OPS4_CANAL (P46596) Opaque-phase-specific protein OP4 precursor|
          Length = 402

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 524 ALDNQTKPFTDLTSAELNSPPNGTTVVSGSADAQKAAS 411
           AL N T   +D+ +A  +S P GTT  S +  A KAA+
Sbjct: 290 ALSNGTITASDINNAGSSSKPTGTTTASTATAAPKAAT 327

>MKS1_MOUSE (Q5SW45) Meckel syndrome type 1 protein homolog|
          Length = 561

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 109 AVMYSRQTQSRSLRTKLTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSRRTSPS 282
           A M S   Q + +R+ L R  G S+ SS   VL+ +R  R+R+      L     SP+
Sbjct: 501 AFMESNSLQ-KQMRSVLDRLEGFSQQSSTHNVLEAFRRARRRMQEARESLPQDLVSPT 557

>MKS1_RAT (Q499Q5) Meckel syndrome type 1 protein homolog|
          Length = 561

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +1

Query: 103 IHAVMYSRQ-TQSRSLRTK----LTRKAGHSRHSSWMEVLQTYRSCRKRLTREAGDLHSR 267
           +H +  SR   +S SLR +    L R  G S+ SS   VL+ +R  R+R+      L   
Sbjct: 493 LHCLQQSRAFMESNSLRKQMRSVLDRLEGFSQQSSTHNVLEAFRRARRRMQEARESLPQD 552

Query: 268 RTSPS 282
             SP+
Sbjct: 553 LVSPT 557

>VTS1_CANAL (Q5AI80) Protein VTS1|
          Length = 679

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -2

Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSPPNGTTVVSGSA 432
           N ++N++G    NS   KG H++ +NS         P + ++  + ++  N TT  +G A
Sbjct: 538 NNSNNNSGNTNINSNQNKGTHKKKINS---------PTSAVSMQQNSTSVNSTTSGNGGA 588

Query: 431 DA 426
           +A
Sbjct: 589 NA 590

>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 611 NMTSNHAGPVTSNSTSLKGQHEQPVNSTAALDNQTKPFTDLTSAELNSP----PNGTTVV 444
           N T NH  P   +  S+KG   + VN       +  P   L  +E  +P     NG   +
Sbjct: 579 NETINHIIPNGKSEDSIKGLQPEDVNLLVTCREEGNPVASLGHSEAETPVDAYSNGQAAL 638

Query: 443 SGSADAQK 420
            G  + +K
Sbjct: 639 MGEKERKK 646


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,691,872
Number of Sequences: 219361
Number of extensions: 1780691
Number of successful extensions: 4488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4486
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)