Clone Name | rbah61p18 |
---|---|
Clone Library Name | barley_pub |
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 529 gttgaatttactggctgctcatgctgacctttcaaagaggttgaatta 576 ||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct: 97248 gttgaatttgcttgctgctcttgttgacctttcaaagaggtcgaatta 97201
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 529 gttgaatttactggctgctcatgctgacctttcaaagaggttgaatta 576 ||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct: 29265381 gttgaatttgcttgctgctcttgttgacctttcaaagaggtcgaatta 29265334
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 529 gttgaatttactggctgctcatgctgacctttcaaagaggttgaatta 576 ||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct: 90619 gttgaatttgcttgctgctcttgttgacctttcaaagaggtcgaatta 90666
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 529 gttgaatttactggctgctcatgctgacctttcaaagaggttgaatta 576 ||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct: 29356809 gttgaatttgcttgctgctcttgttgacctttcaaagaggtcgaatta 29356762
>dbj|AK068759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158A20, full insert sequence Length = 2062 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 529 gttgaatttactggctgctcatgctgacctttcaaagaggttgaatta 576 ||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct: 1538 gttgaatttgcttgctgctcttgttgacctttcaaagaggtcgaatta 1491
>emb|AL160171.27| Human DNA sequence from clone RP11-256E16 on chromosome 1 Contains a novel gene, a novel gene (FLJ30525), the 5' end of a novel gene (FLJ10330) and a CpG island, complete sequence Length = 161273 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 ctaggcaaacacaaagcaggtc 143 |||||||||||||||||||||| Sbjct: 144954 ctaggcaaacacaaagcaggtc 144933
>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a peroxiredoxin 6 (Prdx6) pseudogene, a novel gene (1700086D15Rik), a novel pseudogene, and two CpG islands, complete sequence Length = 196566 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 atgtactctaggcaaacacaaa 136 |||||||||||||||||||||| Sbjct: 5230 atgtactctaggcaaacacaaa 5209
>gb|AF348157.1|AF348157 Mus musculus putative prostate cancer susceptibility protein (Elac2) gene, complete cds, alternatively spliced Length = 34593 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 atgtactctaggcaaacacaaa 136 |||||||||||||||||||||| Sbjct: 10890 atgtactctaggcaaacacaaa 10869
>emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chromosome 2, complete sequence Length = 189104 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 494 cagtgaatggttttgtttggtt 515 |||||||||||||||||||||| Sbjct: 174515 cagtgaatggttttgtttggtt 174536
>gb|AC122746.7| Mus musculus chromosome 17, clone RP23-144A20, complete sequence Length = 218858 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cttctttattgctcaccagag 367 ||||||||||||||||||||| Sbjct: 30525 cttctttattgctcaccagag 30545
>emb|CR700395.2|CNS0G3DJ Tetraodon nigroviridis full-length cDNA Length = 1776 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 catcctggatggaagtcctacaaac 212 |||||||||||||||||| |||||| Sbjct: 78 catcctggatggaagtcccacaaac 54
>ref|XM_466724.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2934 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccttctgggtgtcgccggct 345 |||||||||||||||||||| Sbjct: 815 ccttctgggtgtcgccggct 796
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 822 ccatttggtggagaattcag 841
>ref|NM_001003300.1| Canis familiaris potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 3480 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 768 ccatttggtggagaattcag 787
>gb|AC127241.3| Mus musculus BAC clone RP24-403D23 from chromosome 16, complete sequence Length = 146434 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 tcctggatggaagtcctacaaact 213 |||||||||||||| ||||||||| Sbjct: 80501 tcctggatggaagttctacaaact 80524
>gb|AY040849.1| Homo sapiens large conductance calcium-activated potassium channel subfamily M alpha member 1 (KCNMA1) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 896 ccatttggtggagaattcag 915
>ref|NM_001032810.1| Macaca mulatta calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3456 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 873 ccatttggtggagaattcag 892
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 876 ccatttggtggagaattcag 895
>emb|AL691514.5| Human DNA sequence from clone RP11-105M16 on chromosome 10, complete sequence Length = 154348 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 aggttgaattacttgtcact 585 |||||||||||||||||||| Sbjct: 146690 aggttgaattacttgtcact 146709
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1192 ccatttggtggagaattcag 1211
>gb|AY862880.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit isoform B (Kcnma1) mRNA, partial cds, alternatively spliced Length = 945 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 774 ccatttggtggagaattcag 793
>gb|AY862879.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit isoform A (Kcnma1) mRNA, partial cds, alternatively spliced Length = 783 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 612 ccatttggtggagaattcag 631
>ref|NM_002247.2| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), transcript variant 2, mRNA Length = 6103 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1131 ccatttggtggagaattcag 1150
>ref|NM_001014797.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), transcript variant 1, mRNA Length = 11993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1131 ccatttggtggagaattcag 1150
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 916 ccatttggtggagaattcag 935
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1283 ccatttggtggagaattcag 1302
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1192 ccatttggtggagaattcag 1211
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccttctgggtgtcgccggct 345 |||||||||||||||||||| Sbjct: 24297943 ccttctgggtgtcgccggct 24297924 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggtataatgtctcttccaac 74 |||||||||||||||||||| Sbjct: 1122297 ggtataatgtctcttccaac 1122316
>gb|AC007876.2|AC007876 Homo sapiens BAC clone RP11-65G9 from Y, complete sequence Length = 164879 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctctaggcaaacacaaagca 139 |||||||||||||||||||| Sbjct: 163821 ctctaggcaaacacaaagca 163802
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 876 ccatttggtggagaattcag 895
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 ccaggagaacttcaccttcgccga 286 |||||||||| ||||||||||||| Sbjct: 4703386 ccaggagaacctcaccttcgccga 4703409
>gb|U11058.2|HSU11058 Homo sapiens large conductance calcium- and voltage-dependent potassium channel alpha subunit (MaxiK) mRNA, complete cds Length = 5829 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 845 ccatttggtggagaattcag 864
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggtataatgtctcttccaac 74 |||||||||||||||||||| Sbjct: 74821 ggtataatgtctcttccaac 74840
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggtataatgtctcttccaac 74 |||||||||||||||||||| Sbjct: 111005 ggtataatgtctcttccaac 111024
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccttctgggtgtcgccggct 345 |||||||||||||||||||| Sbjct: 98331 ccttctgggtgtcgccggct 98312
>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0407A09 Length = 103788 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccttctgggtgtcgccggct 345 |||||||||||||||||||| Sbjct: 27481 ccttctgggtgtcgccggct 27462
>emb|BX648925.1|HSM809076 Homo sapiens mRNA; cDNA DKFZp686K1437 (from clone DKFZp686K1437) Length = 3165 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 205 ccatttggtggagaattcag 224
>dbj|AB113575.1| Homo sapiens BKTM mRNA for BK variant stretch-activated Kca channel, complete cds Length = 3588 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 882 ccatttggtggagaattcag 901
>dbj|AB113382.1| Homo sapiens SAKCA mRNA for stretch-activated Kca channel, complete cds Length = 3751 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 896 ccatttggtggagaattcag 915
>dbj|AK099971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127M11, full insert sequence Length = 2934 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccttctgggtgtcgccggct 345 |||||||||||||||||||| Sbjct: 815 ccttctgggtgtcgccggct 796
>gb|AF118141.1|AF118141 Homo sapiens BKCA alpha subunit mRNA, complete cds Length = 3364 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 759 ccatttggtggagaattcag 778
>dbj|AP001874.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2238L14, complete sequence Length = 124167 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 558 tttcaaagaggttgaattacttgt 581 |||||||||||||||||| ||||| Sbjct: 74431 tttcaaagaggttgaattccttgt 74408
>gb|U11717.1|HSU11717 Human calcium activated potassium channel (hslo) mRNA, complete cds Length = 3769 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 906 ccatttggtggagaattcag 925
>gb|AF026001.1|AF026001 Macaca mulatta calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3456 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 873 ccatttggtggagaattcag 892
>gb|AF025999.1|AF025999 Homo sapiens calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3465 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 882 ccatttggtggagaattcag 901
>dbj|AB209488.1| Homo sapiens mRNA for large conductance calcium-activated potassium channel subfamily M alpha member 1 variant protein Length = 11401 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 537 ccatttggtggagaattcag 556
>gb|U23767.1|HSU23767 Human calcium-activated potassium channel (hSlo) mRNA, complete cds Length = 3537 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 954 ccatttggtggagaattcag 973
>gb|U13913.1|HSU13913 Human large-conductance calcium-activated potassium channel (hSlo) mRNA, complete cds Length = 4149 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 1032 ccatttggtggagaattcag 1051
>gb|U41001.1|CFU41001 Canis familiaris calcium activated potassium channel protein mRNA, complete cds Length = 3480 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 768 ccatttggtggagaattcag 787
>gb|U09384.1|HSU09384 Human calcium-activated potassium channel mRNA, partial cds Length = 2016 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ccatttggtggagaattcag 476 |||||||||||||||||||| Sbjct: 949 ccatttggtggagaattcag 968
>emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chromosome 2, complete sequence Length = 148257 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 gctgctcatgctgacctttc 561 |||||||||||||||||||| Sbjct: 61444 gctgctcatgctgacctttc 61425 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,774,969 Number of Sequences: 3902068 Number of extensions: 4774969 Number of successful extensions: 94640 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94418 Number of HSP's gapped (non-prelim): 222 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)