Clone Information

BLAST Search Result

Clone Name	rbah62e24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	7e-09
2	dbj\|AK065543.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	70	7e-09
3	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	70	7e-09
4	emb\|AL731762.2\|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119...	70	7e-09
5	gb\|AC163281.3\| Mus musculus BAC clone RP23-443B19 from chromosom...	44	0.43
6	gb\|AC134838.4\| Mus musculus BAC clone RP24-350C10 from 8, comple...	44	0.43
7	gb\|AC134548.5\| Mus musculus BAC clone RP24-258K6 from chromosome...	42	1.7
8	gb\|AC026887.9\| Homo sapiens chromosome 10 clone RP11-544P1, comp...	42	1.7
9	gb\|AC096638.2\| Homo sapiens chromosome 1 clone RP11-224O19, comp...	42	1.7
10	gb\|AF295068.2\|AF314199S7 Homo sapiens neuroplastoma apoptosis-re...	42	1.7
11	gb\|AC152827.4\| Mus musculus BAC clone RP23-60K23 from chromosome...	42	1.7
12	gb\|AC138177.12\| Mus musculus chromosome 15, clone RP23-32P19, co...	42	1.7
13	dbj\|AK028311.1\| Mus musculus adult male brain cDNA, RIKEN full-l...	42	1.7
14	gb\|AC067852.23\| Homo sapiens chromosome 17, clone RP11-400F19, c...	42	1.7
15	emb\|AL591582.32\| Mouse DNA sequence from clone RP23-403P3 on chr...	42	1.7
16	emb\|AL671963.9\| Mouse DNA sequence from clone RP23-35L3 on chrom...	42	1.7
17	gb\|AC130671.7\| Mus musculus chromosome 15, clone RP24-90K19, com...	40	6.7
18	gb\|BT019122.1\| Zea mays clone Contig734.F mRNA sequence	40	6.7
19	gb\|AF190464.1\| Homo sapiens hepatocytic transcription factor (B1...	40	6.7
20	gb\|AC005608.1\| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL ...	40	6.7
21	gb\|AC154465.2\| Mus musculus BAC clone RP24-146O1 from chromosome...	40	6.7
22	gb\|AC165245.2\| Mus musculus BAC clone RP24-376N22 from chromosom...	40	6.7
23	gb\|AY196994.1\| Streptomyces griseoruber heda cluster, complete s...	40	6.7
24	gb\|AC133908.7\| Mus musculus chromosome 5, clone RP24-299L9, comp...	40	6.7
25	gb\|AC159708.13\| Mus musculus 10 BAC RP23-110M21 (Roswell Park Ca...	40	6.7
26	emb\|AJ131612.1\|HSA131612 Homo sapiens dic gene, exons 1-11	40	6.7
27	gb\|AC127327.4\| Mus musculus BAC clone RP23-254M18 from 5, comple...	40	6.7
28	gb\|AC161825.13\| Mus musculus 10 BAC RP23-35O24 (Roswell Park Can...	40	6.7
29	gb\|AC107232.4\| Mus musculus chromosome 15, clone RP23-144B2, com...	40	6.7
30	gb\|AC083867.7\| Homo sapiens chromosome 7 clone RP11-183I20, comp...	40	6.7
31	emb\|AL596223.3\| Human DNA sequence from clone RP11-227H15 on chr...	40	6.7
32	emb\|AL512328.15\| Human DNA sequence from clone RP11-505D24 on ch...	40	6.7
33	emb\|AL513188.13\| Human DNA sequence from clone RP11-322M21 on ch...	40	6.7
34	emb\|AL445256.18\| Human DNA sequence from clone RP11-167K24 on ch...	40	6.7
35	emb\|AL356915.19\| Human DNA sequence from clone RP11-179F17 on ch...	40	6.7
36	emb\|AL356603.11\| Human DNA sequence from clone RP11-500B2 on chr...	40	6.7
37	emb\|AL136313.27\| Human DNA sequence from clone RP4-551N11 on chr...	40	6.7
38	emb\|AL136141.13\| Human DNA sequence from clone RP11-138E2 on chr...	40	6.7
39	emb\|AL133461.10\| Human DNA sequence from clone RP11-359E7 on chr...	40	6.7
40	emb\|AL109918.25\|HSDJ152L7 Human DNA sequence from clone RP1-152L...	40	6.7
41	gb\|AC145208.1\| Homo sapiens chromosome 17, clone XXfos-85405H6, ...	40	6.7
42	emb\|AL626785.26\| Mouse DNA sequence from clone RP23-220F20 on ch...	40	6.7
43	emb\|AJ489765.2\|UME489765 Uncultured methanogenic archaeon partia...	40	6.7
44	gb\|AC130680.13\| Mus musculus chromosome 7, clone RP23-180G17, co...	40	6.7
45	gb\|AC109448.3\| Homo sapiens chromosome 5 clone RP11-141G2, compl...	40	6.7
46	gb\|AC090116.15\| Homo sapiens 12q BAC RP11-578B16 (Roswell Park C...	40	6.7
47	gb\|AC027672.12\| Homo sapiens chromosome 10 clone RP11-198M6, com...	40	6.7
48	gb\|AC025917.8\| Homo sapiens chromosome 15 clone RP11-23N2 map 15...	40	6.7
49	gb\|AC027336.4\| Homo sapiens chromosome 5 clone CTD-2215L10, comp...	40	6.7
50	gb\|AC022446.6\| Homo sapiens chromosome 5 clone RP11-5H13, comple...	40	6.7
51	dbj\|AK038301.1\| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	40	6.7
52	dbj\|AB194902.1\| Chlamydomonas reinhardtii LSP1 gene for putative...	40	6.7
53	gb\|AC139530.3\| Homo sapiens chromosome 17, clone RP13-1032I1, co...	40	6.7
54	gb\|AC079816.31\| Mus musculus strain C57BL/6J chromosome 11 clone...	40	6.7
55	gb\|AC078797.20\| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Canc...	40	6.7
56	gb\|AC079338.5\| Homo sapiens BAC clone CTD-2314H8 from 2, complet...	40	6.7
57	dbj\|BA000041.2\| Pan troglodytes DNA, major histocompatibility co...	40	6.7
58	emb\|AJ586244.1\| Uncultured methanogenic archaeon partial mcrA ge...	40	6.7
59	emb\|AL391833.10\| Human DNA sequence from clone RP11-307K1 on chr...	40	6.7
60	emb\|AL954673.5\| Zebrafish DNA sequence from clone BUSM1-122B7 in...	40	6.7
61	dbj\|AP001351.5\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	40	6.7
62	dbj\|AP000620.4\| Homo sapiens genomic DNA, chromosome 11q clone:C...	40	6.7
63	gb\|AC073946.23\| Mus musculus strain C57BL/6J chromosome 8 clone ...	40	6.7
64	emb\|AL591703.14\| Mouse DNA sequence from clone RP23-448P12 on ch...	40	6.7
65	emb\|AM182244.1\| Uncultured methanogenic archaeon partial mcrA ge...	40	6.7
66	emb\|AM182243.1\| Uncultured methanogenic archaeon partial mcrA ge...	40	6.7
67	emb\|AM182258.1\| Uncultured methanogenic archaeon partial mcrA ge...	40	6.7
68	gb\|AC005209.1\|AC005209 Homo sapiens chromosome 17, clone hRPK.62...	40	6.7
69	gb\|AC004031.1\|AC004031 Homo sapiens 12q24 PAC RPCI1-261P5 (Roswe...	40	6.7
70	emb\|CT009732.8\| Mouse DNA sequence from clone RP23-72O20 on chro...	40	6.7
71	emb\|AL928870.5\| Zebrafish DNA sequence from clone CH211-237D5 in...	40	6.7
72	emb\|AL663072.12\| Mouse DNA sequence from clone RP23-22J3 on chro...	40	6.7
73	dbj\|AP000888.3\| Homo sapiens genomic DNA, chromosome 6q25.2, clo...	40	6.7
74	dbj\|AP000887.3\| Homo sapiens genomic DNA, chromosome 6q25.2, clo...	40	6.7
75	dbj\|AP001269.4\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	6.7

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 407      tcgtccgggtccacgtgcgccaccaggcccagcgtatcaccgtgctccaggtcgaagtag 466
                ||||||||||| || | |||||||||||| ||||| ||||| ||||| || || ||||| 
Sbjct: 27418323 tcgtccgggtcaacattcgccaccaggccaagcgtttcaccttgctcaagatcaaagtaa 27418264

                                       
Query: 467      aggcacaggaaatcccgagtcac 489
                |||||||||||||| | ||||||
Sbjct: 27418263 aggcacaggaaatctctagtcac 27418241

to top

>dbj|AK065543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034D09, full
            insert sequence
          Length = 2290

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 407  tcgtccgggtccacgtgcgccaccaggcccagcgtatcaccgtgctccaggtcgaagtag 466
            ||||||||||| || | |||||||||||| ||||| ||||| ||||| || || ||||| 
Sbjct: 2018 tcgtccgggtcaacattcgccaccaggccaagcgtttcaccttgctcaagatcaaagtaa 1959

                                   
Query: 467  aggcacaggaaatcccgagtcac 489
            |||||||||||||| | ||||||
Sbjct: 1958 aggcacaggaaatctctagtcac 1936

to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 407      tcgtccgggtccacgtgcgccaccaggcccagcgtatcaccgtgctccaggtcgaagtag 466
                ||||||||||| || | |||||||||||| ||||| ||||| ||||| || || ||||| 
Sbjct: 27343923 tcgtccgggtcaacattcgccaccaggccaagcgtttcaccttgctcaagatcaaagtaa 27343864

                                       
Query: 467      aggcacaggaaatcccgagtcac 489
                |||||||||||||| | ||||||
Sbjct: 27343863 aggcacaggaaatctctagtcac 27343841

to top

>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 407   tcgtccgggtccacgtgcgccaccaggcccagcgtatcaccgtgctccaggtcgaagtag 466
             ||||||||||| || | |||||||||||| ||||| ||||| ||||| || || ||||| 
Sbjct: 86643 tcgtccgggtcaacattcgccaccaggccaagcgtttcaccttgctcaagatcaaagtaa 86584

                                    
Query: 467   aggcacaggaaatcccgagtcac 489
             |||||||||||||| | ||||||
Sbjct: 86583 aggcacaggaaatctctagtcac 86561

to top

>gb|AC163281.3| Mus musculus BAC clone RP23-443B19 from chromosome 8, complete sequence
          Length = 197609

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 420   cgtgcgccaccaggcccagcgtatca 445
             |||||||||||||||||||| |||||
Sbjct: 15853 cgtgcgccaccaggcccagcttatca 15878

to top

>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 420   cgtgcgccaccaggcccagcgtatca 445
             |||||||||||||||||||| |||||
Sbjct: 82271 cgtgcgccaccaggcccagcttatca 82246

to top

>gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome 15, complete sequence
          Length = 177331

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 419    acgtgcgccaccaggcccagc 439
              |||||||||||||||||||||
Sbjct: 173605 acgtgcgccaccaggcccagc 173625

to top

>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence
          Length = 187495

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 208    cttctgtcatcatctcagtgg 228
              |||||||||||||||||||||
Sbjct: 115504 cttctgtcatcatctcagtgg 115524

to top

>gb|AC096638.2| Homo sapiens chromosome 1 clone RP11-224O19, complete sequence
          Length = 185784

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   tctgtcatcatctcagtgggc 230
             |||||||||||||||||||||
Sbjct: 48360 tctgtcatcatctcagtgggc 48340

to top

>gb|AF295068.2|AF314199S7 Homo sapiens neuroplastoma apoptosis-related RNA-binding protein
            (CUGBP2) gene, exons 10, 11a, 11b, 12, 13a, 13b, 14, and
            complete cds, alternatively spliced
          Length = 78359

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 208  cttctgtcatcatctcagtgg 228
            |||||||||||||||||||||
Sbjct: 1053 cttctgtcatcatctcagtgg 1033

to top

>gb|AC152827.4| Mus musculus BAC clone RP23-60K23 from chromosome 12, complete sequence
          Length = 195066

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 420   cgtgcgccaccaggcccagcg 440
             |||||||||||||||||||||
Sbjct: 45183 cgtgcgccaccaggcccagcg 45203

to top

>gb|AC138177.12| Mus musculus chromosome 15, clone RP23-32P19, complete sequence
          Length = 180896

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 419    acgtgcgccaccaggcccagc 439
              |||||||||||||||||||||
Sbjct: 159932 acgtgcgccaccaggcccagc 159912

to top

>dbj|AK028311.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched
            library, clone:3526402A12 product:unclassifiable, full
            insert sequence
          Length = 2656

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 419  acgtgcgccaccaggcccagc 439
            |||||||||||||||||||||
Sbjct: 2551 acgtgcgccaccaggcccagc 2531

to top

>gb|AC067852.23| Homo sapiens chromosome 17, clone RP11-400F19, complete sequence
          Length = 179146

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    acttctgtcatcatctcagtg 227
              |||||||||||||||||||||
Sbjct: 175010 acttctgtcatcatctcagtg 175030

to top

>emb|AL591582.32| Mouse DNA sequence from clone RP23-403P3 on chromosome 12, complete
              sequence
          Length = 168814

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 420    cgtgcgccaccaggcccagcg 440
              |||||||||||||||||||||
Sbjct: 166661 cgtgcgccaccaggcccagcg 166681

to top

>emb|AL671963.9| Mouse DNA sequence from clone RP23-35L3 on chromosome X, complete
             sequence
          Length = 200688

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 420   cgtgcgccaccaggcccagcgtatc 444
             |||||||||||||||||||| ||||
Sbjct: 21751 cgtgcgccaccaggcccagcttatc 21775

to top

>gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, complete sequence
          Length = 205646

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 34864 cgtgcgccaccaggcccagc 34845

to top

>gb|BT019122.1| Zea mays clone Contig734.F mRNA sequence
          Length = 942

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  gctggctgccgagcttgtaa 114
           ||||||||||||||||||||
Sbjct: 511 gctggctgccgagcttgtaa 530

to top

>gb|AF190464.1| Homo sapiens hepatocytic transcription factor (B1F) gene, alternatively
              spliced products, complete cds, complete sequence
          Length = 209216

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 116594 cgtgcgccaccaggcccagc 116613

to top

>gb|AC005608.1| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL H152), complete
             sequence
          Length = 119298

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 62643 cgtgcgccaccaggcccagc 62624

to top

>gb|AC154465.2| Mus musculus BAC clone RP24-146O1 from chromosome 14, complete sequence
          Length = 189186

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 151673 cgtgcgccaccaggcccagc 151692

to top

>gb|AC165245.2| Mus musculus BAC clone RP24-376N22 from chromosome 9, complete sequence
          Length = 217074

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 216845 cgtgcgccaccaggcccagc 216826

to top

>gb|AY196994.1| Streptomyces griseoruber heda cluster, complete sequence
          Length = 45603

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   tccagggacaggtagcccag 303
             ||||||||||||||||||||
Sbjct: 13158 tccagggacaggtagcccag 13177

to top

>gb|AC133908.7| Mus musculus chromosome 5, clone RP24-299L9, complete sequence
          Length = 214270

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 194462 cgtgcgccaccaggcccagc 194443

to top

>gb|AC159708.13| Mus musculus 10 BAC RP23-110M21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 238622

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 83200 cgtgcgccaccaggcccagc 83181

to top

>emb|AJ131612.1|HSA131612 Homo sapiens dic gene, exons 1-11
          Length = 8626

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  cgtgcgccaccaggcccagc 439
            ||||||||||||||||||||
Sbjct: 6417 cgtgcgccaccaggcccagc 6398

to top

>gb|AC127327.4| Mus musculus BAC clone RP23-254M18 from 5, complete sequence
          Length = 198433

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 101692 cgtgcgccaccaggcccagc 101673

to top

>gb|AC161825.13| Mus musculus 10 BAC RP23-35O24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199841

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 55741 cgtgcgccaccaggcccagc 55760

to top

>gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, complete sequence
          Length = 204292

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 25427 cgtgcgccaccaggcccagc 25446

to top

>gb|AC083867.7| Homo sapiens chromosome 7 clone RP11-183I20, complete sequence
          Length = 148251

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 116663 cgtgcgccaccaggcccagc 116644

to top

>emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chromosome 10 Contains 3'
              end of the VPS26 gene for vacuolar protein sorting 26
              (yeast) (HB58, Hbeta58, FLJ12930), the SUPV3L1 gene for
              suppressor of var1, 3-like 1 (S. cerevisiae)(SUV3), the
              gene for a novel hexokinase domain containing protein
              (FLJ37767), the 5' end of the HK1 gene for hexokinase 1
              (HKI, HXK1), two novel genes, a ribosomal protein S15a
              (RPS15A) pseudogene and two CpG islands, complete sequence
          Length = 180548

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 130612 cgtgcgccaccaggcccagc 130631

to top

>emb|AL512328.15| Human DNA sequence from clone RP11-505D24 on chromosome 1 Contains the
             5' end of the AGT gene for angiotensinogen (serine (or
             cysteine) proteinase inhibitor, clade A (alpha-1
             antiproteinase, antitrypsin), member 8), the 5' end of the
             CAPN9 gene for calpain 9 (nCL-4) and the 3' end of a
             variant of a novel gene, complete sequence
          Length = 55722

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   gcacctccagggacaggtag 298
             ||||||||||||||||||||
Sbjct: 19377 gcacctccagggacaggtag 19396

to top

>emb|AL513188.13| Human DNA sequence from clone RP11-322M21 on chromosome 6 Contains part
             of a novel gene (FLJ20342) and part of a novel gene,
             complete sequence
          Length = 87863

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 78639 cgtgcgccaccaggcccagc 78658

to top

>emb|AL445256.18| Human DNA sequence from clone RP11-167K24 on chromosome 6 Contains part
             of the RAB3IP2 gene for RAB3 interacting protein 2,
             complete sequence
          Length = 66683

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 37033 cgtgcgccaccaggcccagc 37014

to top

>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the
             5' end of the FLT3 gene for fms-related tyrosine kinase 3,
             a novel gene, a eukaryotic translation elongation factor 1
             alpha 1 pseudogene, a novel pseudogene and two CpG
             islands, complete sequence
          Length = 194520

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 45450 cgtgcgccaccaggcccagc 45431

to top

>emb|AL356603.11| Human DNA sequence from clone RP11-500B2 on chromosome 10 Contains part
             of the INPP5A gene for inositol
             polyphosphate-5-phosphatase 40kDa and two CpG islands,
             complete sequence
          Length = 112648

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 72165 cgtgcgccaccaggcccagc 72184

to top

>emb|AL136313.27| Human DNA sequence from clone RP4-551N11 on chromosome 6, complete
             sequence
          Length = 128152

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 13050 cgtgcgccaccaggcccagc 13031

to top

>emb|AL136141.13| Human DNA sequence from clone RP11-138E2 on chromosome 9q34.11-34.3
             Contains the 5' end of the FNBP1 gene for formin binding
             protein 1 (FBP17), the GPR107 gene for G protein-coupled
             receptor 107 (LUSTR1) and three CpG islands, complete
             sequence
          Length = 127883

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 29577 cgtgcgccaccaggcccagc 29558

to top

>emb|AL133461.10| Human DNA sequence from clone RP11-359E7 on chromosome 10 Contains the
             3' end of the SAC2 gene for Sac domain-containing inositol
             phosphatase 2, a novel gene (FLJ13081), the 5' end of the
             SEC23IP gene for SEC23 interacting protein, a novel gene
             and three CpG islands, complete sequence
          Length = 124328

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 78323 cgtgcgccaccaggcccagc 78304

to top

>emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L7 on chromosome 6p11.2-12.3
              Contains three glutathione S-transferase pseudogenes, the
              GSTA2 gene for glutathione S-transferase A2, the gene for a
              novel protein (PTD011), a HNRNP A/B related protein
              pseudogene, a SH3BGRL3-like pseudogene and CpG Islands,
              complete sequence
          Length = 175940

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 425    gccaccaggcccagcgtatcaccg 448
              ||||||||||||||| ||||||||
Sbjct: 127657 gccaccaggcccagcctatcaccg 127680

to top

>gb|AC145208.1| Homo sapiens chromosome 17, clone XXfos-85405H6, complete sequence
          Length = 37556

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 17930 cgtgcgccaccaggcccagc 17949

to top

>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a
             novel gene, the 3'  end of the Mmd gene for monocyte to
             macrophage differentiation-associated and the 3' end of
             the Hlf gene for hepatic leukemia factor, complete
             sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 78541 cgtgcgccaccaggcccagc 78560

to top

>emb|AJ489765.2|UME489765 Uncultured methanogenic archaeon partial mcrA gene for
           methyl-coenzyme M reductase subunit A, clone FenE-MCR
          Length = 719

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 gccggtgccttcccgtcctc 357
           ||||||||||||||||||||
Sbjct: 393 gccggtgccttcccgtcctc 374

to top

>gb|AC130680.13| Mus musculus chromosome 7, clone RP23-180G17, complete sequence
          Length = 136680

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  cgtgcgccaccaggcccagc 439
            ||||||||||||||||||||
Sbjct: 2031 cgtgcgccaccaggcccagc 2012

to top

>gb|AC109448.3| Homo sapiens chromosome 5 clone RP11-141G2, complete sequence
          Length = 163817

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 61562 cgtgcgccaccaggcccagc 61543

to top

>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162004

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 180   accatcgcacaacacacaatccag 203
             |||||||||||||||||| |||||
Sbjct: 43525 accatcgcacaacacacattccag 43502

to top

>gb|AC027672.12| Homo sapiens chromosome 10 clone RP11-198M6, complete sequence
          Length = 187229

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 140980 cgtgcgccaccaggcccagc 140999

to top

>gb|AC025917.8| Homo sapiens chromosome 15 clone RP11-23N2 map 15q21, complete sequence
          Length = 149091

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 44912 cgtgcgccaccaggcccagc 44931

to top

>gb|AC027336.4| Homo sapiens chromosome 5 clone CTD-2215L10, complete sequence
          Length = 94479

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 57662 cgtgcgccaccaggcccagc 57643

to top

>gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, complete sequence
          Length = 188534

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 12706 cgtgcgccaccaggcccagc 12687

to top

>dbj|AK038301.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130094C23 product:unclassifiable, full
            insert sequence
          Length = 2409

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  cgtgcgccaccaggcccagc 439
            ||||||||||||||||||||
Sbjct: 2284 cgtgcgccaccaggcccagc 2265

to top

>dbj|AB194902.1| Chlamydomonas reinhardtii LSP1 gene for putative signal transducer
            for phototaxis, complete cds
          Length = 6480

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  gggcgggcgccggtgccgca 246
            ||||||||||||||||||||
Sbjct: 2181 gggcgggcgccggtgccgca 2200

to top

>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence
          Length = 159125

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 10866 cgtgcgccaccaggcccagc 10885

to top

>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete
             sequence
          Length = 172680

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 78612 cgtgcgccaccaggcccagc 78631

to top

>gb|AC078797.20| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166704

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 55000 cgtgcgccaccaggcccagc 55019

to top

>gb|AC079338.5| Homo sapiens BAC clone CTD-2314H8 from 2, complete sequence
          Length = 36237

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 14694 cgtgcgccaccaggcccagc 14713

to top

>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 420     cgtgcgccaccaggcccagc 439
               ||||||||||||||||||||
Sbjct: 1727963 cgtgcgccaccaggcccagc 1727982

to top

>emb|AJ586244.1| Uncultured methanogenic archaeon partial mcrA gene for
           methyl-coenzyme M reductase subunit A, clone BogIV-MCR
          Length = 760

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 gccggtgccttcccgtcctc 357
           ||||||||||||||||||||
Sbjct: 413 gccggtgccttcccgtcctc 394

to top

>emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chromosome 6, complete
              sequence
          Length = 201512

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 179744 cgtgcgccaccaggcccagc 179725

to top

>emb|AL954673.5| Zebrafish DNA sequence from clone BUSM1-122B7 in linkage group 20,
             complete sequence
          Length = 84303

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   acacacaatccagcacactt 210
             ||||||||||||||||||||
Sbjct: 83956 acacacaatccagcacactt 83937

to top

>dbj|AP001351.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2383M3, complete
            sequence
          Length = 90738

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 420  cgtgcgccaccaggcccagc 439
            ||||||||||||||||||||
Sbjct: 1365 cgtgcgccaccaggcccagc 1384

to top

>dbj|AP000620.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-36F4, complete
              sequences
          Length = 121878

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 108855 cgtgcgccaccaggcccagc 108874

to top

>gb|AC073946.23| Mus musculus strain C57BL/6J chromosome 8 clone rp23-218e4, complete
              sequence
          Length = 196558

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    ccaagggcagcaaagacagccagc 173
              |||||||||||||||||| |||||
Sbjct: 151445 ccaagggcagcaaagacacccagc 151422

to top

>emb|AL591703.14| Mouse DNA sequence from clone RP23-448P12 on chromosome 2, complete
             sequence
          Length = 89080

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 17419 cgtgcgccaccaggcccagc 17400

to top

>emb|AM182244.1| Uncultured methanogenic archaeon partial mcrA gene for methyl
           coenzyme M reductase subunit A, clone MCR-Muh11
          Length = 469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 gccggtgccttcccgtcctc 357
           ||||||||||||||||||||
Sbjct: 135 gccggtgccttcccgtcctc 116

to top

>emb|AM182243.1| Uncultured methanogenic archaeon partial mcrA gene for methyl
           coenzyme M reductase subunit A, clone MCR-Muh10
          Length = 469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 gccggtgccttcccgtcctc 357
           ||||||||||||||||||||
Sbjct: 135 gccggtgccttcccgtcctc 116

to top

>emb|AM182258.1| Uncultured methanogenic archaeon partial mcrA gene for methyl
           coenzyme M reductase subunit A, clone ML-Muh25
          Length = 412

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 gccggtgccttcccgtcctc 357
           ||||||||||||||||||||
Sbjct: 87  gccggtgccttcccgtcctc 68

to top

>gb|AC005209.1|AC005209 Homo sapiens chromosome 17, clone hRPK.628_O_18, complete sequence
          Length = 184130

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    gtgcgccaccaggcccagcg 440
              ||||||||||||||||||||
Sbjct: 116475 gtgcgccaccaggcccagcg 116494

to top

>gb|AC004031.1|AC004031 Homo sapiens 12q24 PAC RPCI1-261P5 (Roswell Park Cancer Institute Human
             PAC library) complete sequence
          Length = 74507

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 49399 cgtgcgccaccaggcccagc 49380

to top

>emb|CT009732.8| Mouse DNA sequence from clone RP23-72O20 on chromosome 9, complete
              sequence
          Length = 239257

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 136702 cgtgcgccaccaggcccagc 136683

to top

>emb|AL928870.5| Zebrafish DNA sequence from clone CH211-237D5 in linkage group 20,
              complete sequence
          Length = 179253

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    acacacaatccagcacactt 210
              ||||||||||||||||||||
Sbjct: 119453 acacacaatccagcacactt 119434

to top

>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete
              sequence
          Length = 249536

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 242900 cgtgcgccaccaggcccagc 242881

to top

>dbj|AP000888.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1880F11
          Length = 166355

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 101963 cgtgcgccaccaggcccagc 101944

to top

>dbj|AP000887.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB764F10
          Length = 120664

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cgtgcgccaccaggcccagc 439
              ||||||||||||||||||||
Sbjct: 108959 cgtgcgccaccaggcccagc 108978

to top

>dbj|AP001269.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-820I16, complete
             sequences
          Length = 146181

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cgtgcgccaccaggcccagc 439
             ||||||||||||||||||||
Sbjct: 74387 cgtgcgccaccaggcccagc 74406


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,424,421
Number of Sequences: 3902068
Number of extensions: 4424421
Number of successful extensions: 77808
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77644
Number of HSP's gapped (non-prelim): 164
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result