ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61p17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZAN_RABIT (P57999) Zonadhesin (Fragment) 31 3.2
2ENGC_SHEON (Q8EJ79) Probable GTPase engC (EC 3.6.1.-) 30 5.5

>ZAN_RABIT (P57999) Zonadhesin (Fragment)|
          Length = 2282

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 224  PSCHRQELRCAASRAPSCCSDDNTC 298
            PSC   + RC  +RAPS C++  TC
Sbjct: 1685 PSCFDPDGRCEGARAPSSCAEGCTC 1709



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>ENGC_SHEON (Q8EJ79) Probable GTPase engC (EC 3.6.1.-)|
          Length = 354

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -1

Query: 554 GPELQGENVDTLFTSPEVLHTWASAIIDAYYSSREGT-----LLGQARDLMNPKIIKRVE 390
           G ++   N+D +     VL ++ + IID Y  + E T     ++    DL+ P+    +E
Sbjct: 119 GVKIIASNIDQILIVSSVLPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIE 178

Query: 389 ELVKTIKD 366
           E +K  +D
Sbjct: 179 EALKRYQD 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,511,817
Number of Sequences: 219361
Number of extensions: 1937469
Number of successful extensions: 5446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5443
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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