Clone Name | rbah61p17 |
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Clone Library Name | barley_pub |
>ref|XM_465037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1034 Score = 335 bits (169), Expect = 1e-88 Identities = 262/293 (89%) Strand = Plus / Minus Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465 |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | ||| Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467 Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactcgtgaataatgta 525 || ||||| | || || || ||||||||||| || ||||| ||||||||| |||||||| Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactcgtgtataatgta 407 Query: 526 tcgacattctcgccctgaagttcagggccaggagtaaaagcgtcattcagcgcactcaga 585 || ||||| || |||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 406 tcaacattatccccctgaagttcaggcccaggagtaaatgcgtcattcaatgcactcaag 347 Query: 586 cgctctgctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 645 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 cgttcttctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 287 Query: 646 tgcctctggagattggctacagcagtcatgtatagatggaacattatgtcttt 698 || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 286 tgtctctggagattggctactgcagtcatgtatagatgaaacattatatcttt 234 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 802 atcacatgctacaatcactt 783
>dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C12, full insert sequence Length = 1034 Score = 335 bits (169), Expect = 1e-88 Identities = 262/293 (89%) Strand = Plus / Minus Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465 |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | ||| Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467 Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactcgtgaataatgta 525 || ||||| | || || || ||||||||||| || ||||| ||||||||| |||||||| Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactcgtgtataatgta 407 Query: 526 tcgacattctcgccctgaagttcagggccaggagtaaaagcgtcattcagcgcactcaga 585 || ||||| || |||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 406 tcaacattatccccctgaagttcaggcccaggagtaaatgcgtcattcaatgcactcaag 347 Query: 586 cgctctgctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 645 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 cgttcttctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 287 Query: 646 tgcctctggagattggctacagcagtcatgtatagatggaacattatgtcttt 698 || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 286 tgtctctggagattggctactgcagtcatgtatagatgaaacattatatcttt 234 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 802 atcacatgctacaatcactt 783
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 1e-60 Identities = 170/186 (91%) Strand = Plus / Plus Query: 513 cgtgaataatgtatcgacattctcgccctgaagttcagggccaggagtaaaagcgtcatt 572 |||| |||||||||| ||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 11065944 cgtgtataatgtatcaacattatccccctgaagttcaggcccaggagtaaatgcgtcatt 11066003 Query: 573 cagcgcactcagacgctctgctggatcctcaatcattataagatgctttagtattctgat 632 || ||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 11066004 caatgcactcaagcgttcttctggatcctcaatcattataagatgctttagtattctgat 11066063 Query: 633 atcctttggcatttgcctctggagattggctacagcagtcatgtatagatggaacattat 692 ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 11066064 atcctttggcatttgtctctggagattggctactgcagtcatgtatagatgaaacattat 11066123 Query: 693 gtcttt 698 ||||| Sbjct: 11066124 atcttt 11066129 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465 |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | ||| Sbjct: 11065739 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 11065798 Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactc 513 || ||||| | || || || ||||||||||| || ||||| |||||| Sbjct: 11065799 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactc 11065846 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 11065463 atcacatgctacaatcactt 11065482
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 242 bits (122), Expect = 1e-60 Identities = 170/186 (91%) Strand = Plus / Plus Query: 513 cgtgaataatgtatcgacattctcgccctgaagttcagggccaggagtaaaagcgtcatt 572 |||| |||||||||| ||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 48638 cgtgtataatgtatcaacattatccccctgaagttcaggcccaggagtaaatgcgtcatt 48697 Query: 573 cagcgcactcagacgctctgctggatcctcaatcattataagatgctttagtattctgat 632 || ||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 48698 caatgcactcaagcgttcttctggatcctcaatcattataagatgctttagtattctgat 48757 Query: 633 atcctttggcatttgcctctggagattggctacagcagtcatgtatagatggaacattat 692 ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 48758 atcctttggcatttgtctctggagattggctactgcagtcatgtatagatgaaacattat 48817 Query: 693 gtcttt 698 ||||| Sbjct: 48818 atcttt 48823 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465 |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | ||| Sbjct: 48433 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 48492 Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactc 513 || ||||| | || || || ||||||||||| || ||||| |||||| Sbjct: 48493 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactc 48540 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 48157 atcacatgctacaatcactt 48176
>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087, complete sequence Length = 124300 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 395 ccctctttataattttagggttc 417 ||||||||||||||||||||||| Sbjct: 22562 ccctctttataattttagggttc 22540
>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence Length = 31433 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cagaaggcaatctgcatacac 87 ||||||||||||||||||||| Sbjct: 11356 cagaaggcaatctgcatacac 11376
>gb|AC110176.8| Mus musculus, clone RP23-304C24, complete sequence Length = 234714 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 668 cagtcatgtatagatggaaca 688 ||||||||||||||||||||| Sbjct: 49689 cagtcatgtatagatggaaca 49669
>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete sequence Length = 177314 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 atacactatctaattatctat 102 ||||||||||||||||||||| Sbjct: 152094 atacactatctaattatctat 152114
>gb|AC102159.10| Mus musculus chromosome 19, clone RP23-398L11, complete sequence Length = 197134 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cccaaggagagtgccttccc 454 |||||||||||||||||||| Sbjct: 24151 cccaaggagagtgccttccc 24132
>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the FAM36A gene for member A of family with sequence similarity 36, the gene for a novel protein (FLJ37978, FLJ30202), the HNRPU gene for heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) and three CpG islands, complete sequence Length = 124570 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tggggaggttgggggagtaagaca 125 ||||||||||||||||| |||||| Sbjct: 70230 tggggaggttgggggaggaagaca 70253
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tgcgcagcaagcagagcgcc 270 |||||||||||||||||||| Sbjct: 305419 tgcgcagcaagcagagcgcc 305400
>gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence Length = 116149 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 681 atggaacattatgtcttttg 700 |||||||||||||||||||| Sbjct: 69994 atggaacattatgtcttttg 69975
>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence Length = 181991 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 649 ctctggagattggctacagcagtc 672 ||||||||||||||||||| |||| Sbjct: 52044 ctctggagattggctacagaagtc 52067
>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence Length = 214455 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cagcaagcagagcgccatcc 274 |||||||||||||||||||| Sbjct: 85522 cagcaagcagagcgccatcc 85541
>dbj|BS000082.1| Pan troglodytes chromosome 22 clone:RP43-097H18, map 22, complete sequences Length = 176268 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 679 agatggaacattatgtcttt 698 |||||||||||||||||||| Sbjct: 126209 agatggaacattatgtcttt 126190
>emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-855C23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196698 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 atcctttggcatttgcctct 652 |||||||||||||||||||| Sbjct: 3808 atcctttggcatttgcctct 3789
>dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, section 29/105 Length = 340000 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 679 agatggaacattatgtcttt 698 |||||||||||||||||||| Sbjct: 266644 agatggaacattatgtcttt 266625
>emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chromosome 14, complete sequence Length = 184788 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 cttcagattctgcctgagcagaaggcaa 76 |||||||||||||||| |||||||||| Sbjct: 91900 cttcagattctgcctgcccagaaggcaa 91873
>emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-22F22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155735 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 atcctttggcatttgcctct 652 |||||||||||||||||||| Sbjct: 44591 atcctttggcatttgcctct 44610
>emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surrounding NotI site, clone NL1-BG12R Length = 657 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 tggggaggttgggggagtaagaca 125 ||||||||||||||||| |||||| Sbjct: 253 tggggaggttgggggaggaagaca 230
>dbj|AP000966.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B876D15, LL56-APP region, complete sequence Length = 156234 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 679 agatggaacattatgtcttt 698 |||||||||||||||||||| Sbjct: 131016 agatggaacattatgtcttt 130997 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,346,707 Number of Sequences: 3902068 Number of extensions: 5346707 Number of successful extensions: 98135 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98055 Number of HSP's gapped (non-prelim): 80 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)