ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465037.1| Oryza sativa (japonica cultivar-group), mRNA 335 1e-88
2dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 335 1e-88
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
4dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
5dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.16
6gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence 42 2.4
7gb|AC110176.8| Mus musculus, clone RP23-304C24, complete sequence 42 2.4
8emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chr... 42 2.4
9gb|AC102159.10| Mus musculus chromosome 19, clone RP23-398L11, c... 40 9.6
10emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chrom... 40 9.6
11gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 9.6
12gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L12 map... 40 9.6
13gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, co... 40 9.6
14gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosom... 40 9.6
15dbj|BS000082.1| Pan troglodytes chromosome 22 clone:RP43-097H18,... 40 9.6
16emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-8... 40 9.6
17dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.6
18emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chr... 40 9.6
19emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-2... 40 9.6
20emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surroundi... 40 9.6
21dbj|AP000966.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.6 
>ref|XM_465037.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1034

 Score =  335 bits (169), Expect = 1e-88
 Identities = 262/293 (89%)
 Strand = Plus / Minus

                                                                       
Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465
           |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467

                                                                       
Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactcgtgaataatgta 525
           || ||||| |  || || || ||||||||||| || ||||| ||||||||| ||||||||
Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactcgtgtataatgta 407

                                                                       
Query: 526 tcgacattctcgccctgaagttcagggccaggagtaaaagcgtcattcagcgcactcaga 585
           || ||||| || |||||||||||||| ||||||||||| ||||||||||  |||||||  
Sbjct: 406 tcaacattatccccctgaagttcaggcccaggagtaaatgcgtcattcaatgcactcaag 347

                                                                       
Query: 586 cgctctgctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 645
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgttcttctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 287

                                                                
Query: 646 tgcctctggagattggctacagcagtcatgtatagatggaacattatgtcttt 698
           || ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 286 tgtctctggagattggctactgcagtcatgtatagatgaaacattatatcttt 234



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 atcacatgctacaatcactt 174
           ||||||||||||||||||||
Sbjct: 802 atcacatgctacaatcactt 783
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>dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C12, full
           insert sequence
          Length = 1034

 Score =  335 bits (169), Expect = 1e-88
 Identities = 262/293 (89%)
 Strand = Plus / Minus

                                                                       
Query: 406 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465
           |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467

                                                                       
Query: 466 tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactcgtgaataatgta 525
           || ||||| |  || || || ||||||||||| || ||||| ||||||||| ||||||||
Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactcgtgtataatgta 407

                                                                       
Query: 526 tcgacattctcgccctgaagttcagggccaggagtaaaagcgtcattcagcgcactcaga 585
           || ||||| || |||||||||||||| ||||||||||| ||||||||||  |||||||  
Sbjct: 406 tcaacattatccccctgaagttcaggcccaggagtaaatgcgtcattcaatgcactcaag 347

                                                                       
Query: 586 cgctctgctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 645
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgttcttctggatcctcaatcattataagatgctttagtattctgatatcctttggcatt 287

                                                                
Query: 646 tgcctctggagattggctacagcagtcatgtatagatggaacattatgtcttt 698
           || ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 286 tgtctctggagattggctactgcagtcatgtatagatgaaacattatatcttt 234



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 atcacatgctacaatcactt 174
           ||||||||||||||||||||
Sbjct: 802 atcacatgctacaatcactt 783
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Plus

                                                                            
Query: 513      cgtgaataatgtatcgacattctcgccctgaagttcagggccaggagtaaaagcgtcatt 572
                |||| |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 11065944 cgtgtataatgtatcaacattatccccctgaagttcaggcccaggagtaaatgcgtcatt 11066003

                                                                            
Query: 573      cagcgcactcagacgctctgctggatcctcaatcattataagatgctttagtattctgat 632
                ||  |||||||  || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11066004 caatgcactcaagcgttcttctggatcctcaatcattataagatgctttagtattctgat 11066063

                                                                            
Query: 633      atcctttggcatttgcctctggagattggctacagcagtcatgtatagatggaacattat 692
                ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 11066064 atcctttggcatttgtctctggagattggctactgcagtcatgtatagatgaaacattat 11066123

                      
Query: 693      gtcttt 698
                 |||||
Sbjct: 11066124 atcttt 11066129



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                            
Query: 406      attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465
                |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 11065739 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 11065798

                                                                
Query: 466      tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactc 513
                || ||||| |  || || || ||||||||||| || ||||| ||||||
Sbjct: 11065799 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactc 11065846



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      atcacatgctacaatcactt 174
                ||||||||||||||||||||
Sbjct: 11065463 atcacatgctacaatcactt 11065482
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>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_E11
          Length = 133524

 Score =  242 bits (122), Expect = 1e-60
 Identities = 170/186 (91%)
 Strand = Plus / Plus

                                                                         
Query: 513   cgtgaataatgtatcgacattctcgccctgaagttcagggccaggagtaaaagcgtcatt 572
             |||| |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 48638 cgtgtataatgtatcaacattatccccctgaagttcaggcccaggagtaaatgcgtcatt 48697

                                                                         
Query: 573   cagcgcactcagacgctctgctggatcctcaatcattataagatgctttagtattctgat 632
             ||  |||||||  || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 48698 caatgcactcaagcgttcttctggatcctcaatcattataagatgctttagtattctgat 48757

                                                                         
Query: 633   atcctttggcatttgcctctggagattggctacagcagtcatgtatagatggaacattat 692
             ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 48758 atcctttggcatttgtctctggagattggctactgcagtcatgtatagatgaaacattat 48817

                   
Query: 693   gtcttt 698
              |||||
Sbjct: 48818 atcttt 48823



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                         
Query: 406   attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 465
             |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 48433 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 48492

                                                             
Query: 466   tacgcatcgattatggcgcttgcccaagtgtgcaacacctcaggactc 513
             || ||||| |  || || || ||||||||||| || ||||| ||||||
Sbjct: 48493 tatgcatcaacaatagcactggcccaagtgtgtaatacctctggactc 48540



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   atcacatgctacaatcactt 174
             ||||||||||||||||||||
Sbjct: 48157 atcacatgctacaatcactt 48176
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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
             complete sequence
          Length = 124300

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 395   ccctctttataattttagggttc 417
             |||||||||||||||||||||||
Sbjct: 22562 ccctctttataattttagggttc 22540
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>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence
          Length = 31433

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    cagaaggcaatctgcatacac 87
             |||||||||||||||||||||
Sbjct: 11356 cagaaggcaatctgcatacac 11376
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>gb|AC110176.8| Mus musculus, clone RP23-304C24, complete sequence
          Length = 234714

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 668   cagtcatgtatagatggaaca 688
             |||||||||||||||||||||
Sbjct: 49689 cagtcatgtatagatggaaca 49669
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>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete
              sequence
          Length = 177314

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     atacactatctaattatctat 102
              |||||||||||||||||||||
Sbjct: 152094 atacactatctaattatctat 152114
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>gb|AC102159.10| Mus musculus chromosome 19, clone RP23-398L11, complete sequence
          Length = 197134

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   cccaaggagagtgccttccc 454
             ||||||||||||||||||||
Sbjct: 24151 cccaaggagagtgccttccc 24132
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>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the
             FAM36A gene for member A of family with sequence
             similarity 36, the gene for a novel protein (FLJ37978,
             FLJ30202), the HNRPU gene for heterogeneous nuclear
             ribonucleoprotein U (scaffold attachment factor A) and
             three CpG islands, complete sequence
          Length = 124570

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   tggggaggttgggggagtaagaca 125
             ||||||||||||||||| ||||||
Sbjct: 70230 tggggaggttgggggaggaagaca 70253
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    tgcgcagcaagcagagcgcc 270
              ||||||||||||||||||||
Sbjct: 305419 tgcgcagcaagcagagcgcc 305400
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>gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete
             sequence
          Length = 116149

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 681   atggaacattatgtcttttg 700
             ||||||||||||||||||||
Sbjct: 69994 atggaacattatgtcttttg 69975
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>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence
          Length = 181991

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 649   ctctggagattggctacagcagtc 672
             ||||||||||||||||||| ||||
Sbjct: 52044 ctctggagattggctacagaagtc 52067
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>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence
          Length = 214455

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cagcaagcagagcgccatcc 274
             ||||||||||||||||||||
Sbjct: 85522 cagcaagcagagcgccatcc 85541
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>dbj|BS000082.1| Pan troglodytes chromosome 22 clone:RP43-097H18, map 22, complete
              sequences
          Length = 176268

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 679    agatggaacattatgtcttt 698
              ||||||||||||||||||||
Sbjct: 126209 agatggaacattatgtcttt 126190
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>emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-855C23 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196698

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 633  atcctttggcatttgcctct 652
            ||||||||||||||||||||
Sbjct: 3808 atcctttggcatttgcctct 3789
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>dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, section 29/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 679    agatggaacattatgtcttt 698
              ||||||||||||||||||||
Sbjct: 266644 agatggaacattatgtcttt 266625
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>emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chromosome 14, complete
             sequence
          Length = 184788

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 49    cttcagattctgcctgagcagaaggcaa 76
             ||||||||||||||||  ||||||||||
Sbjct: 91900 cttcagattctgcctgcccagaaggcaa 91873
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>emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-22F22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155735

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 633   atcctttggcatttgcctct 652
             ||||||||||||||||||||
Sbjct: 44591 atcctttggcatttgcctct 44610
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>emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-BG12R
          Length = 657

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 102 tggggaggttgggggagtaagaca 125
           ||||||||||||||||| ||||||
Sbjct: 253 tggggaggttgggggaggaagaca 230
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>dbj|AP000966.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B876D15,
              LL56-APP region, complete sequence
          Length = 156234

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 679    agatggaacattatgtcttt 698
              ||||||||||||||||||||
Sbjct: 131016 agatggaacattatgtcttt 130997


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,346,707
Number of Sequences: 3902068
Number of extensions: 5346707
Number of successful extensions: 98135
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98055
Number of HSP's gapped (non-prelim): 80
length of query: 704
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 681
effective length of database: 17,143,297,704
effective search space: 11674585736424
effective search space used: 11674585736424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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