Clone Information

BLAST Search Result

Clone Name	rbah62e21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|M55447.1\|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	448	e-123
2	gb\|M55449.1\|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	442	e-121
3	gb\|M55446.1\|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	432	e-118
4	gb\|AY206372.1\| Triticum aestivum ribulose-1,5-bisphosphate carbo...	327	1e-86
5	gb\|BC029790.1\| Homo sapiens, clone IMAGE:5192697, mRNA	327	1e-86
6	gb\|AY312574.1\| Deschampsia antarctica Rubisco activase beta form...	240	2e-60
7	gb\|AY312573.1\| Deschampsia antarctica Rubisco activase alpha for...	176	2e-41
8	dbj\|AK104332.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	8e-29
9	dbj\|AK064986.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	8e-29
10	dbj\|AK060847.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	8e-29
11	dbj\|AK060841.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	8e-29
12	dbj\|AB034748.1\| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	8e-29
13	gb\|AC137064.4\| Oryza sativa (japonica cultivar-group) chromosome...	133	3e-28
14	gb\|AC133008.3\| Oryza sativa (japonica cultivar-group) chromosome...	133	3e-28
15	gb\|U74321.1\|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	3e-28
16	dbj\|AB110180.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	133	3e-28
17	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	133	3e-28
18	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	133	3e-28
19	dbj\|AB034698.1\| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	3e-28
20	gb\|DQ359157.1\| Oryza sativa (japonica cultivar-group) chloroplas...	121	1e-24
21	dbj\|AK119513.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	5e-24
22	gb\|DQ023668.1\| Oryza sativa (indica cultivar-group) cultivar Tet...	101	1e-18
23	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	2e-11
24	dbj\|AP005592.2\| Oryza sativa (japonica cultivar-group) genomic D...	78	2e-11
25	gb\|AF338240.1\|AF338240 Zantedeschia aethiopica rubisco activase ...	68	2e-08
26	gb\|AF338239.1\|AF338239 Zantedeschia aethiopica rubisco activase ...	68	2e-08
27	gb\|AF338238.1\|AF338238 Zantedeschia aethiopica rubisco activase ...	68	2e-08
28	gb\|AF338237.1\|AF338237 Zantedeschia aethiopica rubisco activase ...	68	2e-08
29	gb\|AC138278.9\| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	0.93
30	gb\|AC161354.2\| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	0.93
31	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.93
32	gb\|AC144525.3\| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	0.93
33	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	0.93
34	emb\|AL731748.3\|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	0.93
35	emb\|BX000451.4\| Zebrafish DNA sequence from clone CH211-30E10, c...	42	0.93
36	gb\|AC164586.7\| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	0.93
37	gb\|AC003067.59\| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	3.7
38	gb\|AF414359.1\|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	3.7
39	gb\|AC133488.30\| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	3.7
40	ref\|XM_765396.1\| Giardia lamblia ATCC 50803 heat shock protein (...	40	3.7
41	gb\|AC019210.7\| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	3.7
42	gb\|AC011228.9\| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	3.7
43	gb\|AC140953.1\| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	3.7
44	gb\|AE011750.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	3.7
45	dbj\|AP007170.1\| Aspergillus oryzae RIB40 genomic DNA, SC138	40	3.7
46	gb\|AC003066.18\| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	3.7
47	emb\|BX000985.18\| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	3.7
48	ref\|XM_222660.3\| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	3.7
49	gb\|AC133487.14\| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	3.7
50	gb\|AC091764.35\| Mus musculus strain C57BL/6J chromosome 10 clone...	40	3.7

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  448 bits (226), Expect = e-123
 Identities = 254/258 (98%), Gaps = 4/258 (1%)
 Strand = Plus / Minus

                                                                        
Query: 28   tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 88   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 146
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565

                                                                        
Query: 147  t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 205
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505

                                                                        
Query: 206  ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 264
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445

                              
Query: 265  gtg-tgtatggagaattt 281
            ||| ||||||||||||||
Sbjct: 1444 gtgttgtatggagaattt 1427

to top

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  442 bits (223), Expect = e-121
 Identities = 237/241 (98%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggtctttgccaa-tgggtatactnnatatatttagagatatattaacaaaacatgcccag 59
            |||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 7763 ggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccag 7704

                                                                        
Query: 60   caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 7644

                                                                        
Query: 120  gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 7584

                                                                        
Query: 180  gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 7524

             
Query: 240  c 240
            |
Sbjct: 7523 c 7523



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                          
Query: 236  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattt 281
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattt 7310

to top

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  432 bits (218), Expect = e-118
 Identities = 225/228 (98%)
 Strand = Plus / Minus

                                                                        
Query: 11   aatgggtatactnnatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 70
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 71   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 131  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 191  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 238
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

to top

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  327 bits (165), Expect = 1e-86
 Identities = 230/249 (92%), Gaps = 7/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 37  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 90
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 91  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 150
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 151 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 210
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 211 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 270
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                    
Query: 271 atggagaat 279
           |||||||||
Sbjct: 507 atggagaat 499

to top

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  327 bits (165), Expect = 1e-86
 Identities = 230/249 (92%), Gaps = 7/249 (2%)
 Strand = Plus / Minus

                                                                        
Query: 37   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 90
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 91   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 150
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 151  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 210
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 211  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 270
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                     
Query: 271  atggagaat 279
            |||||||||
Sbjct: 1357 atggagaat 1349

to top

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  240 bits (121), Expect = 2e-60
 Identities = 201/225 (89%), Gaps = 7/225 (3%)
 Strand = Plus / Minus

                                                                        
Query: 51   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 104
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 105  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 163
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 164  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 223
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                         
Query: 224  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgt 268
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt 1369

to top

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 2e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 169
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 170  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 229
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 230  tcctttacc 238
            |||||||||
Sbjct: 1369 tcctttacc 1361

to top

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 8e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1394 ccctcctcct 1385

to top

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 8e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1432 ccctcctcct 1423

to top

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 8e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1431 ccctcctcct 1422

to top

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 8e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1215 ccctcctcct 1206

to top

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 8e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1436 ccctcctcct 1427

to top

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 119    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 179    ggcattttggtcggtgcaaccttccggcacgggca 213
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 137    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 196
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 197    accttccggcacggg 211
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

to top

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 119   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 179   ggcattttggtcggtgcaaccttccggcacgggca 213
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 137   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 196
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 197   accttccggcacggg 211
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

to top

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 179  ggcattttggtcggtgcaaccttccggcacgggca 213
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426

to top

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 179  ggcattttggtcggtgcaaccttccggcacgggca 213
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 119      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 179      ggcattttggtcggtgcaaccttccggcacgggca 213
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 137      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 196
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 197      accttccggcacggg 211
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 119      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 179      ggcattttggtcggtgcaaccttccggcacgggca 213
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 137      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 196
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 197      accttccggcacggg 211
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

to top

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 179  ggcattttggtcggtgcaaccttccggcacgggca 213
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371

to top

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 125 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 184
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 185 ttggtcggtgcaaccttccggcacgggca 213
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

to top

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 5e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 179  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 235
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 236  acctcctcct 245
             |||||||||
Sbjct: 1443 ccctcctcct 1434

to top

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 119 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 179 ggcattttggtcggtgcaaccttccggcacgggca 213
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 119     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 179     ggcattttggtcggtgcaaccttccggcacgggca 213
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

to top

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 119   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 178
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 179   ggcattttggtcggtgcaaccttccggcacgggca 213
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

to top

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 129  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 188
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 189  tcggtgcaaccttc 202
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

to top

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 129  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 188
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 189  tcggtgcaaccttc 202
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

to top

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 129  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 188
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 189  tcggtgcaaccttc 202
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

to top

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 129  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 188
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 189  tcggtgcaaccttc 202
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

to top

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    tatatttagagatatattaac 46
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

to top

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    tatatttagagatatattaac 46
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 95      aaacatcagatattaaaagtg 115
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

to top

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   atgcagcaagagatggtgggt 266
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 95      aaacatcagatattaaaagtg 115
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

to top

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     aaacatcagatattaaaagtg 115
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

to top

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    atatatttagagatatattaa 45
             |||||||||||||||||||||
Sbjct: 67943 atatatttagagatatattaa 67963

to top

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 26   tatatttagagatatattaac 46
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

to top

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   cctttacctcctcctatgca 250
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

to top

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  cctttacctcctcctatgca 250
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

to top

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   cctttacctcctcctatgca 250
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

to top

>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    ggtctttgccaatgggtata 20
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266

to top

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tcagatattaaaagtggcat 119
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

to top

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tcagatattaaaagtggcat 119
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

to top

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   tcagatattaaaagtggcat 119
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

to top

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 128  ggtgtaaaggcagctgccgtcgtcgctc 155
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

to top

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    aaacatgcccagcaatcgcttgga 71
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

to top

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   cctttacctcctcctatgca 250
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

to top

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tggcatgcttaaaaggtgta 133
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

to top

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 220 cttgctgtgctcctttacctcctc 243
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

to top

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   cctttacctcctcctatgca 250
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

to top

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     atcagatattaaaagtggcatgct 122
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,219,172
Number of Sequences: 3902068
Number of extensions: 2219172
Number of successful extensions: 46176
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45990
Number of HSP's gapped (non-prelim): 157
length of query: 281
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 259
effective length of database: 17,147,199,772
effective search space: 4441124740948
effective search space used: 4441124740948
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result