Clone Name | rbah61p13 |
---|---|
Clone Library Name | barley_pub |
>gb|AF234163.1|AF234163 Hordeum vulgare starch synthase I (SSI) gene, complete cds Length = 8387 Score = 957 bits (483), Expect = 0.0 Identities = 493/495 (99%), Gaps = 1/495 (0%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8017 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 7958 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7957 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 7898 Query: 121 caaaactgtaactgtcatccacccgaagctgccgcggcagcgctgcgaccgtcgtctact 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 7897 caaaactgtaactgtcatccacccgaagctgccgcggcagcgttgcgaccgtcgtctact 7838 Query: 181 ctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaacgca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7837 ctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaacgca 7778 Query: 241 atgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagagctc 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 7777 atgtacaggggtatcctccttcc-ggccgcggaaggatgaggaacatgtcttcagagctc 7719 Query: 301 aaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtccacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7718 aaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtccacg 7659 Query: 361 aaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtctttc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7658 aaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtctttc 7599 Query: 421 gtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaaatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7598 gtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaaatc 7539 Query: 481 gcggttcgcaatgcc 495 ||||||||||||||| Sbjct: 7538 gcggttcgcaatgcc 7524 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 cccacaacattttttccacg 513 |||||||||||||||||||| Sbjct: 7223 cccacaacattttttccacg 7204
>gb|BT009116.1| Triticum aestivum clone wl1.pk0012.g10:fis, full insert mRNA sequence Length = 802 Score = 731 bits (369), Expect = 0.0 Identities = 481/516 (93%), Gaps = 8/516 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 699 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 642 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 641 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 582 Query: 121 caaaactgtaactgtcatccacccgaagctg---ccgcggcagcgctgcgaccgtcgtct 177 ||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||| Sbjct: 581 caaaactgtaactgtcatccacccgaagctgtcaccgccgcagcagcacagccgtcatct 522 Query: 178 actctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaac 237 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 521 actctcgaaccggcggaccaagcaagcaggcgcattgcgactctactgtagcaggacaac 462 Query: 238 gcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagag 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 461 gcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttcagag 405 Query: 298 ctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcc 357 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 404 ctcaaggagacccgcgcttcgacctccccagtccccgtctacatgacgtagggttggtcc 345 Query: 358 acgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 acgaaggcccattcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 285 Query: 418 ttcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaa 477 ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 284 ttcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgac 225 Query: 478 atcgcggttcgcaatgcccacaacattttttccacg 513 |||||||||||||||||||||||||| || |||||| Sbjct: 224 atcgcggttcgcaatgcccacaacatcttgtccacg 189
>emb|AJ292521.1|TAE292521 Triticum aestivum mRNA for starch synthase I-1 (wSsI-1 gene) Length = 2575 Score = 731 bits (369), Expect = 0.0 Identities = 481/516 (93%), Gaps = 8/516 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 2499 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 2442 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 2441 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 2382 Query: 121 caaaactgtaactgtcatccacccgaagctg---ccgcggcagcgctgcgaccgtcgtct 177 ||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||| Sbjct: 2381 caaaactgtaactgtcatccacccgaagctgtcaccgccgcagcagcacagccgtcatct 2322 Query: 178 actctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaac 237 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2321 actctcgaaccggcggaccaagcaagcaggcgcattgcgactctactgtagcaggacaac 2262 Query: 238 gcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagag 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2261 gcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttcagag 2205 Query: 298 ctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcc 357 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2204 ctcaaggagacccgcgcttcgacctccccagtccccgtctacatgacgtagggttggtcc 2145 Query: 358 acgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2144 acgaaggcccattcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 2085 Query: 418 ttcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaa 477 ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 2084 ttcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgac 2025 Query: 478 atcgcggttcgcaatgcccacaacattttttccacg 513 |||||||||||||||||||||||||| || |||||| Sbjct: 2024 atcgcggttcgcaatgcccacaacatcttgtccacg 1989
>gb|AF091803.1|AF091803 Triticum aestivum starch synthase I mRNA, complete cds Length = 2591 Score = 731 bits (369), Expect = 0.0 Identities = 481/516 (93%), Gaps = 8/516 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 2532 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 2475 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 2474 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 2415 Query: 121 caaaactgtaactgtcatccacccgaagctg---ccgcggcagcgctgcgaccgtcgtct 177 ||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||| Sbjct: 2414 caaaactgtaactgtcatccacccgaagctgtcaccgccgcagcagcacagccgtcatct 2355 Query: 178 actctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaac 237 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2354 actctcgaaccggcggaccaagcaagcaggcgcattgcgactctactgtagcaggacaac 2295 Query: 238 gcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagag 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2294 gcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttcagag 2238 Query: 298 ctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcc 357 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2237 ctcaaggagacccgcgcttcgacctccccagtccccgtctacatgacgtagggttggtcc 2178 Query: 358 acgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2177 acgaaggcccattcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 2118 Query: 418 ttcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaa 477 ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 2117 ttcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgac 2058 Query: 478 atcgcggttcgcaatgcccacaacattttttccacg 513 |||||||||||||||||||||||||| || |||||| Sbjct: 2057 atcgcggttcgcaatgcccacaacatcttgtccacg 2022
>gb|AF091802.1|AF091802 Aegilops tauschii starch synthase I gene, complete cds Length = 11387 Score = 712 bits (359), Expect = 0.0 Identities = 465/498 (93%), Gaps = 8/498 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 10990 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 10933 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 10932 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 10873 Query: 121 caaaactgtaactgtcatccacccgaagctg---ccgcggcagcgctgcgaccgtcgtct 177 ||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||| Sbjct: 10872 caaaactgtaactgtcatccacccgaagctgtcaccgccgcagcagcacagccgtcatct 10813 Query: 178 actctcgaaccggcgaaccaagcaagcaagcgcattgcgactctactgtagcaggacaac 237 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 10812 actctcgaaccggcggaccaagcaagcaggcgcattgcgactctactgtagcaggacaac 10753 Query: 238 gcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagag 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10752 gcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttcagag 10696 Query: 298 ctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcc 357 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 10695 ctcaaggagacccgcgcttcgacctccccagtccccgtctacatgacgtagggttggtcc 10636 Query: 358 acgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10635 acgaaggcccattcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtct 10576 Query: 418 ttcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaa 477 ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 10575 ttcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgac 10516 Query: 478 atcgcggttcgcaatgcc 495 |||||||||||||||||| Sbjct: 10515 atcgcggttcgcaatgcc 10498
>emb|AJ292522.1|TAE292522 Triticum aestivum mRNA for starch synthase I-2 (wSsI-2 gene) Length = 2421 Score = 509 bits (257), Expect = e-141 Identities = 317/335 (94%), Gaps = 4/335 (1%) Strand = Plus / Minus Query: 180 tctcgaaccggcgaaccaa-gcaagcaagcgcattgcgactctactgtagcaggacaacg 238 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 2224 tctcgaaccggcgaaccaaagcaagcaggcgcattgcgactctactgtagcaggacaacg 2165 Query: 239 caatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagagc 298 ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct: 2164 caatgtacaggggtatcct---tccgggccgcggaaggatgaagaggatgtcttcagagc 2108 Query: 299 tcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcca 358 ||||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2107 tcaaggagactcgcacttggacctccccagtccccgtctacatgacgtagggttggtcca 2048 Query: 359 cgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtctt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2047 cgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtctt 1988 Query: 419 tcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaaa 478 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | Sbjct: 1987 tcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgaca 1928 Query: 479 tcgcggttcgcaatgcccacaacattttttccacg 513 ||||||||||||||||||||||||| || |||||| Sbjct: 1927 tcgcggttcgcaatgcccacaacatcttgtccacg 1893 Score = 206 bits (104), Expect = 5e-50 Identities = 140/151 (92%), Gaps = 2/151 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 2404 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 2347 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 2346 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 2287 Query: 121 caaaactgtaactgtcatccacccgaagctg 151 | |||||||||||||| |||||||||||||| Sbjct: 2286 ccaaactgtaactgtcgtccacccgaagctg 2256
>gb|U48227.1|TAU48227 Triticum aestivum soluble starch synthase mRNA, partial cds Length = 2055 Score = 486 bits (245), Expect = e-134 Identities = 315/335 (94%), Gaps = 5/335 (1%) Strand = Plus / Minus Query: 180 tctcgaaccggcgaaccaa-gcaagcaagcgcattgcgactctactgtagcaggacaacg 238 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 1660 tctcgaaccggcgaaccaaagcaagcaggcgcattgcgactctactgtagcaggacaacg 1601 Query: 239 caatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcagagc 298 ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct: 1600 caatgtacaggggtatcct---tccgggccgcggaaggatgaagaggatgtcttcagagc 1544 Query: 299 tcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggtcca 358 | ||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1543 tgaaggagactcgcacttggacctccccagtccccgtctacatgacgtagggttggtcca 1484 Query: 359 cgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggtctt 418 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1483 cgaaggcccactcgaagatctgctcgtactgctcgg-ggcatggtcccacgtatggtctt 1425 Query: 419 tcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcgaaa 478 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | Sbjct: 1424 tcgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcgaca 1365 Query: 479 tcgcggttcgcaatgcccacaacattttttccacg 513 ||||||||||||||||||||||||| || |||||| Sbjct: 1364 tcgcggttcgcaatgcccacaacatcttgtccacg 1330 Score = 214 bits (108), Expect = 2e-52 Identities = 141/151 (93%), Gaps = 2/151 (1%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1840 ctaaggctaaagagtcaccagttggtttctgatttcagctgtaacacggac--agagagg 1783 Query: 61 ctgccgactgagtggtgctttgctgtcaaccatcctgcagcacctcccttccttattccc 120 ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 1782 ctgccatctgagtggtgctttgctgttaaccatcctgcagcacatcccttccttattccc 1723 Query: 121 caaaactgtaactgtcatccacccgaagctg 151 |||||||||||||||| |||||||||||||| Sbjct: 1722 caaaactgtaactgtcgtccacccgaagctg 1692
>gb|BT009026.1| Triticum aestivum clone wdk3c.pk019.f14:fis, full insert mRNA sequence Length = 1431 Score = 412 bits (208), Expect = e-112 Identities = 261/278 (93%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 236 acgcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcag 295 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 1086 acgcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttctg 1030 Query: 296 agctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggt 355 ||||||||||||||| ||||||||||||||||||||| ||||||||||| || || |||| Sbjct: 1029 agctcaaggagactgccgcttcgacctccccagtccccgtctacatgacatatggctggt 970 Query: 356 ccacgaaggcccactcgaagatctgctcgtactgctcggcggcatggtcccacgtatggt 415 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 969 ccacgaaggcccattcgaagatctgctcgtactgctcggcggcatggtcccacgtatggt 910 Query: 416 ctttcgtcatgcctcgcttcatgagcccctcccaggagggcttgtgctccctaaacgtcg 475 |||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct: 909 cttttgtcatgcctcgcttcatgagcccctcccaggacggcttgtgctccctgaatgtcg 850 Query: 476 aaatcgcggttcgcaatgcccacaacattttttccacg 513 | |||||||||||||||||||||||||| || |||||| Sbjct: 849 acatcgcggttcgcaatgcccacaacatcttgtccacg 812 Score = 168 bits (85), Expect = 1e-38 Identities = 138/152 (90%), Gaps = 4/152 (2%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| | Sbjct: 1327 ctaaggctaaagagtcaccagttggtttcagatttcagctgtaacacggaccgagag--g 1270 Query: 61 ctgccgactgagtggtgctttgctgtcaaccat-cctgcagcacctcccttccttattcc 119 ||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||||| Sbjct: 1269 ctgccagctgagtgcaactttgctgttaaccattcctgcagcacc-cccttccttattcc 1211 Query: 120 ccaaaactgtaactgtcatccacccgaagctg 151 |||||||||||||||||||||||||||||||| Sbjct: 1210 ccaaaactgtaactgtcatccacccgaagctg 1179 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 177 tactctcgaaccggcgaaccaagcaagcaagcgcattgc 215 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 1150 tactctcgaaccggcgaaccaagcaagcaggcgcattgc 1112
>emb|AJ635204.1| Triticum durum ssp. durum partial ss1 gene for putative soluble starch synthase, genomic RNA Length = 442 Score = 202 bits (102), Expect = 8e-49 Identities = 141/152 (92%), Gaps = 4/152 (2%) Strand = Plus / Minus Query: 236 acgcaatgtacaggggtatcctccttccgggccgcggaaggatgaggaacatgtcttcag 295 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 149 acgcaatgtacaggggtatcct---tccgggccgcggaaggatgaggaacatgtcttctg 93 Query: 296 agctcaaggagactggcgcttcgacctccccagtcccagtctacatgacgtagggttggt 355 ||||||||||||||| ||||||||||||||||||||| ||||||||||| || || |||| Sbjct: 92 agctcaaggagactgccgcttcgacctccccagtccctgtctacatgacatatggctggt 33 Query: 356 ccacgaaggcccactc-gaagatctgctcgta 386 ||||||||||||| || ||||||||||||||| Sbjct: 32 ccacgaaggcccattcggaagatctgctcgta 1 Score = 168 bits (85), Expect = 1e-38 Identities = 138/152 (90%), Gaps = 4/152 (2%) Strand = Plus / Minus Query: 1 ctaaggctaaagagacaccagttggtttctgatttcagctgtaacacccaccgagagagg 60 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| | Sbjct: 390 ctaaggctaaagagtcaccagttggtttcagatttcagctgtaacacggaccgagag--g 333 Query: 61 ctgccgactgagtggtgctttgctgtcaaccat-cctgcagcacctcccttccttattcc 119 ||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||||| Sbjct: 332 ctgccagctgagtgcaactttgctgttaaccattcctgcagcacc-cccttccttattcc 274 Query: 120 ccaaaactgtaactgtcatccacccgaagctg 151 |||||||||||||||||||||||||||||||| Sbjct: 273 ccaaaactgtaactgtcatccacccgaagctg 242 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 177 tactctcgaaccggcgaaccaagcaagcaagcgcattgc 215 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 213 tactctcgaaccggcgaaccaagcaagcaggcgcattgc 175
>gb|BT018427.1| Zea mays clone EL01N0362G08.d mRNA sequence Length = 1802 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| |||||| | || | ||||||||||| |||||| || ||||| || || ||| Sbjct: 1383 tacatgacatagggtcgatcgatgaaggcccactggaagatttgttcgtattgttcagcg 1324 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 |||||||||||||| |||||| | ||||||||||||||| ||||| |||||||||| | Sbjct: 1323 gcatggtcccacgtgaagtcttttgacatgcctcgcttcattagcccttcccaggaggac 1264 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | || || || || |||||||||| ||||||||| ||||| Sbjct: 1263 ttgtgttccctgtatgtagatattgcagttcgcaatgtccacaacatgttttc 1211
>gb|BT016354.1| Zea mays clone Contig187 mRNA sequence Length = 938 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| |||||| | || | ||||||||||| |||||| || ||||| || || ||| Sbjct: 539 tacatgacatagggtcgatcgatgaaggcccactggaagatttgttcgtattgttcagcg 480 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 |||||||||||||| |||||| | ||||||||||||||| ||||| |||||||||| | Sbjct: 479 gcatggtcccacgtgaagtcttttgacatgcctcgcttcattagcccttcccaggaggac 420 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | || || || || |||||||||| ||||||||| ||||| Sbjct: 419 ttgtgttccctgtatgtagatattgcagttcgcaatgtccacaacatgttttc 367
>gb|AF036891.2| Zea mays plastid starch synthase I precursor (Ss1) mRNA, complete cds; nuclear gene for plastid product Length = 2357 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| |||||| | || | ||||||||||| |||||| || ||||| || || ||| Sbjct: 1976 tacatgacatagggtcgatcgatgaaggcccactggaagatttgttcgtattgttcagcg 1917 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 |||||||||||||| |||||| | ||||||||||||||| ||||| |||||||||| | Sbjct: 1916 gcatggtcccacgtgaagtcttttgacatgcctcgcttcattagcccttcccaggaggac 1857 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | || || || || |||||||||| ||||||||| ||||| Sbjct: 1856 ttgtgttccctgtatgtagatattgcagttcgcaatgtccacaacatgttttc 1804
>gb|AY104834.1| Zea mays PCO152066 mRNA sequence Length = 1530 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| |||||| | || | ||||||||||| |||||| || ||||| || || ||| Sbjct: 1149 tacatgacatagggtcgatcgatgaaggcccactggaagatttgttcgtattgttcagcg 1090 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 |||||||||||||| |||||| | ||||||||||||||| ||||| |||||||||| | Sbjct: 1089 gcatggtcccacgtgaagtcttttgacatgcctcgcttcattagcccttcccaggaggac 1030 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | || || || || |||||||||| ||||||||| ||||| Sbjct: 1029 ttgtgttccctgtatgtagatattgcagttcgcaatgtccacaacatgttttc 977
>ref|XM_550329.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2623 Score = 105 bits (53), Expect = 1e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 2117 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 2058 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 2057 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 1998 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 1997 ttgtgttccctgtatgtcgaaattgccatccgcaatgcccacagcattttttc 1945
>gb|AY299404.1| Oryza sativa (indica cultivar-group) soluble starch synthase I precursor, mRNA, complete cds Length = 2547 Score = 105 bits (53), Expect = 1e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 2021 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 1962 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 1961 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 1902 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 1901 ttgtgttccctgtatgtcgaaattgccatccgcaatgcccacagcattttttc 1849
>dbj|AK109458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C03, full insert sequence Length = 2623 Score = 105 bits (53), Expect = 1e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 2117 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 2058 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 2057 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 1998 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacattttttc 509 ||||| ||||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 1997 ttgtgttccctgtatgtcgaaattgccatccgcaatgcccacagcattttttc 1945
>gb|AF165890.1|AF165890 Oryza sativa subsp. japonica soluble starch synthase mRNA, complete cds Length = 2585 Score = 103 bits (52), Expect = 6e-19 Identities = 142/172 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 2064 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 2005 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 2004 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 1945 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacatttttt 508 ||||| ||||| | |||||||| || | ||||||||||||| |||||||| Sbjct: 1944 ttgtgttccctgtatgtcgaaattgccatccgcaatgcccacagcatttttt 1893
>dbj|D16202.1|RICSSS Oryza sativa mRNA for soluble starch synthase, complete cds Length = 2533 Score = 103 bits (52), Expect = 6e-19 Identities = 142/172 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 2039 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 1980 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 1979 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 1920 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaacatttttt 508 ||||| ||||| | |||||||| || | ||||||||||||| |||||||| Sbjct: 1919 ttgtgttccctgtatgtcgaaattgccatccgcaatgcccacagcatttttt 1868
>gb|AF168786.2|AF168786 Sorghum bicolor soluble starch synthase mRNA, complete cds Length = 2592 Score = 95.6 bits (48), Expect = 1e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| |||||| | || | ||||||||||| |||||| || ||||| || || ||| Sbjct: 2002 tacatgacatagggtcgatcgatgaaggcccactggaagatttgttcgtattgttcagcg 1943 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 |||||||||||||| |||||| | |||||| | |||||||||||| |||||||| | Sbjct: 1942 gcatggtcccacgtgaagtcttttgacatgcccctcttcatgagcccttcccaggaagat 1883 Query: 457 ttgtgctccctaaacgtcgaaatcgcggttcgcaatgcccacaa 500 ||||||||| | | |||||||| || |||||||||| |||||| Sbjct: 1882 ttgtgctccttgtatgtcgaaattgcagttcgcaatgtccacaa 1839
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 3078794 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 3078853 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 3078854 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 3078913 Query: 457 ttgtgctccct 467 ||||| ||||| Sbjct: 3078914 ttgtgttccct 3078924
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 32979 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 33038 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 33039 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 33098 Query: 457 ttgtgctccct 467 ||||| ||||| Sbjct: 33099 ttgtgttccct 33109
>dbj|D38221.1|RICE1 Rice gene for soluble starch synthase (SSS1), complete cds (exon1-15) Length = 8900 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 337 tacatgacgtagggttggtccacgaaggcccactcgaagatctgctcgtactgctcggcg 396 |||||||| || ||||| |||| ||||||||| ||||||||||| || ||||| |||| Sbjct: 8161 tacatgacatatggttgatccatgaaggcccattcgaagatctgttcatactgtgaggcg 8102 Query: 397 gcatggtcccacgtatggtctttcgtcatgcctcgcttcatgagcccctcccaggagggc 456 ||||||||||| ||| ||| | | ||||||||||||||| || |||||||| |||| | Sbjct: 8101 gcatggtcccatgtaaagtcgcttgacatgcctcgcttcattagaccctcccaagaggac 8042 Query: 457 ttgtgctccct 467 ||||| ||||| Sbjct: 8041 ttgtgttccct 8031
>emb|AL627228.31| Mouse DNA sequence from clone RP23-137L22 on chromosome 4, complete sequence Length = 193813 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 aaggagactggcgcttcgacctcccc 326 ||||||||||| |||||||||||||| Sbjct: 23232 aaggagactggggcttcgacctcccc 23257
>ref|XM_655790.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3278.2), mRNA Length = 1365 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 gtactgctcggcggcatggtc 404 ||||||||||||||||||||| Sbjct: 555 gtactgctcggcggcatggtc 535
>gb|AC090432.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-454P8, complete sequence Length = 148344 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 gttggtttctgatttcagctg 41 ||||||||||||||||||||| Sbjct: 46707 gttggtttctgatttcagctg 46727
>emb|AL669827.5| Mouse DNA sequence from clone RP23-350D17 on chromosome 11 Contains a PDZ domain containing guanine (Pdzgef1) pseudogene, a tubulin alpha 4 (Tuba4) pseudogene , an olfactory receptor pseudogene, a novel pseudogene and the 3' end of a novel gene, complete sequence Length = 108424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 cctcccttccttattccccaa 123 ||||||||||||||||||||| Sbjct: 4045 cctcccttccttattccccaa 4065
>gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p11.2-p21, complete sequence Length = 156880 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cacctcccttccttattcccc 121 ||||||||||||||||||||| Sbjct: 22657 cacctcccttccttattcccc 22637
>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence Length = 171690 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cacctcccttccttattcccc 121 ||||||||||||||||||||| Sbjct: 22838 cacctcccttccttattcccc 22818
>ref|NM_208434.1| Eremothecium gossypii ABR134Cp (ABR134C), mRNA Length = 2931 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 137 atccacccgaagctgccgcggcagc 161 ||||||||||||| ||||||||||| Sbjct: 643 atccacccgaagcggccgcggcagc 619
>dbj|AB220949.1| Sphingomonas sp. KA1 plasmid pCAR3 carAaII, carBaII, carBbII, carCII, carAcII, carRII, tnpR, tnpA genes for terminal oxygenase component of carbazole 1,9a-dioxygenase, subunit of meta cleavage enzyme, subunit of meta cleavage enzyme, meta cleavage compound hydrolase, ferredoxin component of carbazole 1,9a-dioxygenase, transcriptional regulator of car operon, resolvase, transposase, complete cds Length = 6383 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 348 gggttggtccacgaaggcccactcg 372 |||||||||||||||||||| |||| Sbjct: 5850 gggttggtccacgaaggcccgctcg 5826
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 137 atccacccgaagctgccgcggcagc 161 ||||||||||||| ||||||||||| Sbjct: 647468 atccacccgaagcggccgcggcagc 647492
>dbj|AB065700.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_263 Length = 43818 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cacctcccttccttattcccc 121 ||||||||||||||||||||| Sbjct: 70 cacctcccttccttattcccc 50
>gb|AC154527.2| Mus musculus BAC clone RP23-221K13 from chromosome 14, complete sequence Length = 215802 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 124642 ttggtttctgatttcagctg 124661
>gb|AC107316.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-258F1, complete sequence Length = 118461 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 106121 ttggtttctgatttcagctg 106102
>gb|AC022453.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-253G12, complete sequence Length = 199642 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 10991 ttggtttctgatttcagctg 10972
>gb|AE006840.1| Sulfolobus solfataricus P2 section 199 of 272 of the complete genome Length = 12983 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 gtttctgatttcagctgtaa 44 |||||||||||||||||||| Sbjct: 7855 gtttctgatttcagctgtaa 7836
>gb|AC125190.4| Mus musculus BAC clone RP23-288O24 from chromosome 13, complete sequence Length = 152080 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 46224 ttggtttctgatttcagctg 46243
>gb|AC132586.3| Mus musculus BAC clone RP24-364D22 from chromosome 7, complete sequence Length = 136155 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 73158 ttggtttctgatttcagctg 73139
>emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 on chromosome 6p11.2-12.3 Contains part of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052), complete sequence Length = 126501 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 cccaaaactgtaactgtcatccac 142 |||||||||||| ||||||||||| Sbjct: 34226 cccaaaactgtatctgtcatccac 34203
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcagcgctgcgaccgtcgtc 176 |||||||||||||||||||| Sbjct: 1614664 gcagcgctgcgaccgtcgtc 1614683
>gb|AC010798.9| Homo sapiens, clone RP11-470B24, complete sequence Length = 176148 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 tccccaaaactgtaactgtcatcc 140 ||||| |||||||||||||||||| Sbjct: 131183 tcccctaaactgtaactgtcatcc 131206
>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence Length = 203375 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 tgagcccctcccaggagggc 456 |||||||||||||||||||| Sbjct: 111111 tgagcccctcccaggagggc 111092
>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced Length = 381696 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cccaaaactgtaactgtcatccac 142 |||||||||||| ||||||||||| Sbjct: 243096 cccaaaactgtatctgtcatccac 243119
>gb|AC158628.7| Mus musculus 6 BAC RP23-147K11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188746 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 tccccagtcccagtctacat 341 |||||||||||||||||||| Sbjct: 114974 tccccagtcccagtctacat 114955
>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete sequence Length = 189102 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcacctcccttccttattcc 119 |||||||||||||||||||| Sbjct: 86864 gcacctcccttccttattcc 86845
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gagagaggctgccgactgag 72 |||||||||||||||||||| Sbjct: 8040772 gagagaggctgccgactgag 8040753
>gb|AC158665.3| Mus musculus 6 BAC RP23-102M16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207904 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 tccccagtcccagtctacat 341 |||||||||||||||||||| Sbjct: 11411 tccccagtcccagtctacat 11392
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 gagagaggctgccgactgag 72 |||||||||||||||||||| Sbjct: 78969 gagagaggctgccgactgag 78950
>dbj|AB094078.1| Silene latifolia DNA, CCLS96.1 homolog and ScD05 homolog Length = 7800 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 agagctcaaggagactggcgcttc 317 |||||||||||||| ||||||||| Sbjct: 6662 agagctcaaggagattggcgcttc 6685
>gb|AC149294.8| Mus musculus chromosome 15, clone RP24-389G21, complete sequence Length = 136530 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttggtttctgatttcagctg 41 |||||||||||||||||||| Sbjct: 95720 ttggtttctgatttcagctg 95701
>emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chromosome X, complete sequence Length = 228355 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 agcccctcccaggagggctt 458 |||||||||||||||||||| Sbjct: 195234 agcccctcccaggagggctt 195253 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,513,708 Number of Sequences: 3902068 Number of extensions: 3513708 Number of successful extensions: 66276 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66075 Number of HSP's gapped (non-prelim): 170 length of query: 513 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 490 effective length of database: 17,143,297,704 effective search space: 8400215874960 effective search space used: 8400215874960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)