Clone Name
rbah62e19
Clone Library Name
barley_pub
>C71AG_ARATH (Q9FH66) Cytochrome P450 71A16 (EC 1.14.-.-)|
Length = 497
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 59 CSTSNVVIRIKAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYL 208
C T+ + I + K LK N PP + N++ L HPHR +S L
Sbjct: 10 CLTTFLTILLFFKSLLKRPNSNLPPSPWRLPVIGNLHQLSLHPHRALSSL 59
>SENP5_MACFA (Q8WP32) Sentrin-specific protease 5 (EC 3.4.22.-)|
(Sentrin/SUMO-specific protease SENP5)
Length = 755
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 415 VPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRIKLANEL 275
+PQQ N D GVF + Y K + P FS D+ +R ++ EL
Sbjct: 704 IPQQKNDSDCGVFVLQYCKCLALEQPF--QFSQEDMPRVRKRIYKEL 748
>SENP5_HUMAN (Q96HI0) Sentrin-specific protease 5 (EC 3.4.22.-)|
(Sentrin/SUMO-specific protease SENP5)
Length = 755
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 415 VPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRIKLANEL 275
+PQQ N D GVF + Y K + P FS D+ +R ++ EL
Sbjct: 704 IPQQKNDSDCGVFVLQYCKCLALEQPF--QFSQEDMPRVRKRIYKEL 748
>FMT_PROMP (Q7TUA3) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
Length = 328
Score = 29.6 bits (65), Expect = 5.0
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Frame = +2
Query: 80 IRIKAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYLVLHIT---KEVCNKRLV 250
I+I+ LK SSE+ + I+ ++Q+ +R I+ L+ T +E+ R++
Sbjct: 154 IKIENNDNLKTLTKKLSDLSSELFL-RAISDIEQNKNRDINLLLKKQTDFKRELKYARMI 212
Query: 251 GTVGWAKIKFICQLDPDVIDIGRTKQIANRSPRRPVLHIHHGENSKIIRVSLLRNHRIHN 430
K+ +I + DI R +I PR + +N KII++ +L H IHN
Sbjct: 213 N-----KLDYIINWENSATDIYR--KINALYPRANTTYKR--KNLKIIKIKILTTHEIHN 263
>C71AN_ARATH (Q9STL0) Cytochrome P450 71A23 (EC 1.14.-.-)|
Length = 483
Score = 29.6 bits (65), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 89 KAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYL 208
K K K+ N PP+ + N++ L QHPHR + YL
Sbjct: 20 KHKTVNKIINFPSPPR---LPLIGNLHQLSQHPHRSLCYL 56
>TCPZ_YEAST (P39079) T-complex protein 1 subunit zeta (TCP-1-zeta) (CCT-zeta)|
Length = 546
Score = 29.3 bits (64), Expect = 6.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 345 LGDQCFIYITEKT-PKSSALVC*GTTGYTMPKLLKSIR 455
+G++ F Y+TE T PKS ++ G+T Y + + ++R
Sbjct: 359 IGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVR 396
>STRN_MOUSE (O55106) Striatin|
Length = 780
Score = 29.3 bits (64), Expect = 6.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 312 ISITSGSSWQMNFILAHPTVPTSL 241
+ TS SS Q+N +++HPT+P S+
Sbjct: 657 VDSTSSSSCQINRVISHPTLPISI 680
>LKTB_PASTR (Q933E0) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKTB_PASSP (P55122) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKTB_MANGL (Q933I3) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKTB7_PASHA (P0C086) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB2B_PASHA (Q93FG6) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB2A_PASHA (Q93FH0) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB1B_PASHA (Q93FH6) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKB1A_PASHA (P16532) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKB16_PASHA (Q93FH3) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB14_PASHA (P0C087) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB13_PASHA (Q93FH2) Leukotoxin translocation ATP-binding protein lktB (EC|
3.6.3.43)
Length = 708
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 490 LWDMFVSPIMRKRIDFK 440
LW +F+SPI+R+R+D K
Sbjct: 307 LWSIFISPILRRRLDEK 323
>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)|
(Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1)
Length = 568
Score = 28.9 bits (63), Expect = 8.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 466 IMRKRIDFKSF--GIVYPVVPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRI 293
+ + R+DF G V +Q N D G F + Y KH + P F+ D+ +R
Sbjct: 498 VKKDRLDFHQGWKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPFS--FTQQDMPKLRR 555
Query: 292 KLANEL 275
++ EL
Sbjct: 556 QIYKEL 561
>SP2AB_BACCR (Q819B3) Anti-sigma F factor (EC 2.7.11.1) (Stage II sporulation|
protein AB)
Length = 146
Score = 28.9 bits (63), Expect = 8.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 278 FICQLDPDVIDIGRTKQIANRSPRRPVLHIHHGENSKIIRVSLL 409
FI QLDP + ++ K + + + ++H + G I+ +S++
Sbjct: 26 FIAQLDPTMEELTEIKTVVSEAVTNAIIHGYEGNAEGIVYISVI 69
>DHCR7_XENTR (Q6P4M0) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC|
reductase) (Sterol delta-7-reductase)
Length = 473
Score = 28.9 bits (63), Expect = 8.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 400 NADDFGVFS-VMYMKHWSPRTPIGNLFSSADIDNIRIKLANELYFSPSNSADKSFVTNFF 224
NA F FS + + +W P NL + +K YF P+N+ D F NFF
Sbjct: 159 NAYHFHWFSPTIIIDNWVPLLWCANLLGYSVATFALLKA----YFFPTNAHDCKFTGNFF 214
Query: 223 GDVQN*IRYSP 191
D I ++P
Sbjct: 215 YDYMMGIEFNP 225
>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)|
(Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
protease 3)
Length = 574
Score = 28.9 bits (63), Expect = 8.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 466 IMRKRIDFKSF--GIVYPVVPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRI 293
+ + R+DF G V +Q N D G F + Y KH + P F+ D+ +R
Sbjct: 504 VKKDRLDFHQGWKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPFS--FTQQDMPKLRR 561
Query: 292 KLANEL 275
++ EL
Sbjct: 562 QIYKEL 567
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,893,848
Number of Sequences: 219361
Number of extensions: 1256610
Number of successful extensions: 3078
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3078
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)