ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62e19 |
|---|---|
| Clone Library Name | barley_pub |
>C71AG_ARATH (Q9FH66) Cytochrome P450 71A16 (EC 1.14.-.-)| Length = 497 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 59 CSTSNVVIRIKAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYL 208 C T+ + I + K LK N PP + N++ L HPHR +S L Sbjct: 10 CLTTFLTILLFFKSLLKRPNSNLPPSPWRLPVIGNLHQLSLHPHRALSSL 59
>SENP5_MACFA (Q8WP32) Sentrin-specific protease 5 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP5) Length = 755 Score = 30.8 bits (68), Expect = 2.2 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = -3 Query: 415 VPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRIKLANEL 275 +PQQ N D GVF + Y K + P FS D+ +R ++ EL Sbjct: 704 IPQQKNDSDCGVFVLQYCKCLALEQPF--QFSQEDMPRVRKRIYKEL 748
>SENP5_HUMAN (Q96HI0) Sentrin-specific protease 5 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP5) Length = 755 Score = 30.8 bits (68), Expect = 2.2 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = -3 Query: 415 VPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRIKLANEL 275 +PQQ N D GVF + Y K + P FS D+ +R ++ EL Sbjct: 704 IPQQKNDSDCGVFVLQYCKCLALEQPF--QFSQEDMPRVRKRIYKEL 748
>FMT_PROMP (Q7TUA3) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 328 Score = 29.6 bits (65), Expect = 5.0 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Frame = +2 Query: 80 IRIKAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYLVLHIT---KEVCNKRLV 250 I+I+ LK SSE+ + I+ ++Q+ +R I+ L+ T +E+ R++ Sbjct: 154 IKIENNDNLKTLTKKLSDLSSELFL-RAISDIEQNKNRDINLLLKKQTDFKRELKYARMI 212 Query: 251 GTVGWAKIKFICQLDPDVIDIGRTKQIANRSPRRPVLHIHHGENSKIIRVSLLRNHRIHN 430 K+ +I + DI R +I PR + +N KII++ +L H IHN Sbjct: 213 N-----KLDYIINWENSATDIYR--KINALYPRANTTYKR--KNLKIIKIKILTTHEIHN 263
>C71AN_ARATH (Q9STL0) Cytochrome P450 71A23 (EC 1.14.-.-)| Length = 483 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 89 KAKQTLKLYNLT*PPKSSEMITTKNINMLDQHPHRRISYL 208 K K K+ N PP+ + N++ L QHPHR + YL Sbjct: 20 KHKTVNKIINFPSPPR---LPLIGNLHQLSQHPHRSLCYL 56
>TCPZ_YEAST (P39079) T-complex protein 1 subunit zeta (TCP-1-zeta) (CCT-zeta)| Length = 546 Score = 29.3 bits (64), Expect = 6.5 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +3 Query: 345 LGDQCFIYITEKT-PKSSALVC*GTTGYTMPKLLKSIR 455 +G++ F Y+TE T PKS ++ G+T Y + + ++R Sbjct: 359 IGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVR 396
>STRN_MOUSE (O55106) Striatin| Length = 780 Score = 29.3 bits (64), Expect = 6.5 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -1 Query: 312 ISITSGSSWQMNFILAHPTVPTSL 241 + TS SS Q+N +++HPT+P S+ Sbjct: 657 VDSTSSSSCQINRVISHPTLPISI 680
>LKTB_PASTR (Q933E0) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKTB_PASSP (P55122) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKTB_MANGL (Q933I3) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKTB7_PASHA (P0C086) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB2B_PASHA (Q93FG6) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB2A_PASHA (Q93FH0) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB1B_PASHA (Q93FH6) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKB1A_PASHA (P16532) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDEK 323
>LKB16_PASHA (Q93FH3) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB14_PASHA (P0C087) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDDK 323
>LKB13_PASHA (Q93FH2) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 490 LWDMFVSPIMRKRIDFK 440 LW +F+SPI+R+R+D K Sbjct: 307 LWSIFISPILRRRLDEK 323
>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1) Length = 568 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -3 Query: 466 IMRKRIDFKSF--GIVYPVVPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRI 293 + + R+DF G V +Q N D G F + Y KH + P F+ D+ +R Sbjct: 498 VKKDRLDFHQGWKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPFS--FTQQDMPKLRR 555 Query: 292 KLANEL 275 ++ EL Sbjct: 556 QIYKEL 561
>SP2AB_BACCR (Q819B3) Anti-sigma F factor (EC 2.7.11.1) (Stage II sporulation| protein AB) Length = 146 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 278 FICQLDPDVIDIGRTKQIANRSPRRPVLHIHHGENSKIIRVSLL 409 FI QLDP + ++ K + + + ++H + G I+ +S++ Sbjct: 26 FIAQLDPTMEELTEIKTVVSEAVTNAIIHGYEGNAEGIVYISVI 69
>DHCR7_XENTR (Q6P4M0) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 28.9 bits (63), Expect = 8.5 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = -3 Query: 400 NADDFGVFS-VMYMKHWSPRTPIGNLFSSADIDNIRIKLANELYFSPSNSADKSFVTNFF 224 NA F FS + + +W P NL + +K YF P+N+ D F NFF Sbjct: 159 NAYHFHWFSPTIIIDNWVPLLWCANLLGYSVATFALLKA----YFFPTNAHDCKFTGNFF 214 Query: 223 GDVQN*IRYSP 191 D I ++P Sbjct: 215 YDYMMGIEFNP 225
>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific protease 3) Length = 574 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -3 Query: 466 IMRKRIDFKSF--GIVYPVVPQQTNADDFGVFSVMYMKHWSPRTPIGNLFSSADIDNIRI 293 + + R+DF G V +Q N D G F + Y KH + P F+ D+ +R Sbjct: 504 VKKDRLDFHQGWKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPFS--FTQQDMPKLRR 561 Query: 292 KLANEL 275 ++ EL Sbjct: 562 QIYKEL 567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,893,848 Number of Sequences: 219361 Number of extensions: 1256610 Number of successful extensions: 3078 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3078 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
