Clone Information

BLAST Search Result

Clone Name	rbah62e18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloropla...	174	1e-43
2	THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast pr...	167	2e-41
3	THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloropla...	167	2e-41
4	THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast pr...	165	9e-41
5	THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast pr...	164	2e-40
6	THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial ...	99	1e-20
7	THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial ...	94	3e-19
8	THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial ...	91	2e-18
9	THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial ...	87	4e-17
10	THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial ...	84	3e-16
11	THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme	70	3e-12
12	THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme	69	9e-12
13	THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme	69	9e-12
14	THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme	69	1e-11
15	THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme	67	3e-11
16	THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial ...	65	1e-10
17	THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme	60	3e-09
18	THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme	59	7e-09
19	THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme	58	2e-08
20	THI4_METTH (O27657) Putative thiazole biosynthetic enzyme	57	4e-08
21	THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme	55	1e-07
22	THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme	54	2e-07
23	THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)	54	4e-07
24	THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme	53	5e-07
25	THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme	51	3e-06
26	RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2...	35	0.14
27	RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2...	35	0.19
28	RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2...	35	0.19
29	RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, b...	32	1.2
30	GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)	32	1.6
31	ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarat...	30	3.5
32	RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2...	30	4.6
33	RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2...	30	4.6
34	PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain...	30	4.6
35	YWS4_CAEEL (Q10940) Hypothetical protein B0310.4	30	6.0
36	ENV_EIAV5 (P22430) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
37	COBQ_MYCTU (P0A532) Cobyric acid synthase	29	7.8
38	COBQ_MYCBO (P0A533) Cobyric acid synthase	29	7.8
39	YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'regi...	29	7.8
40	ENV_EIAVY (P06751) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
41	ENV_EIAVW (P16082) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
42	ENV_EIAVC (P32541) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
43	ENV_EIAV9 (P11306) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
44	ENV_EIAV3 (P22429) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
45	ENV_EIAV2 (P22428) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
46	ENV_EIAV1 (P22427) Env polyprotein precursor (Coat polyprotein) ...	29	7.8
47	EMRB_HAEIN (P44927) Multidrug resistance protein B homolog	29	7.8
48	RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2...	29	7.8
49	PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)	29	7.8

>THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloroplast precursor|
          Length = 354

 Score =  174 bits (442), Expect = 1e-43
 Identities = 88/109 (80%), Positives = 98/109 (89%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RLQDIGMI AVPGMKALDMN AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM
Sbjct: 247 RLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 306

Query: 379 MISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 233
           MISGQKAAHLALKALGRPN +DGT+  V+PAL  E ++A+ ++ ++VDA
Sbjct: 307 MISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDD-EVVDA 354

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>THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast precursor|
          Length = 356

 Score =  167 bits (423), Expect = 2e-41
 Identities = 85/109 (77%), Positives = 96/109 (88%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL+ IGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM
Sbjct: 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 310

Query: 379 MISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 233
           MISGQKAAHLALK+LG+PN +DGT       +HPE+ILAA ++A+  DA
Sbjct: 311 MISGQKAAHLALKSLGQPNALDGT---YVGGVHPELILAAADSAETADA 356

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>THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloroplast precursor|
          Length = 354

 Score =  167 bits (422), Expect = 2e-41
 Identities = 87/109 (79%), Positives = 97/109 (88%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RLQDIGMI AVPGMKALDMNTAED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM
Sbjct: 250 RLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 309

Query: 379 MISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 233
           MISGQKAAHLALKALGRPN +DGT+   +P L  E+++A  ++ ++VDA
Sbjct: 310 MISGQKAAHLALKALGRPNAVDGTM---SPPLREELMIAYKDD-EVVDA 354

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>THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast precursor (AG6)|
          Length = 352

 Score =  165 bits (417), Expect = 9e-41
 Identities = 84/108 (77%), Positives = 93/108 (86%)
 Frame = -1

Query: 556 LQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM 377
           L+ IGMI  VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMM
Sbjct: 248 LRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMM 307

Query: 376 ISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 233
           ISGQKAAHLALKALG PN +DG   +    +HPE+ILAA ++A+I DA
Sbjct: 308 ISGQKAAHLALKALGLPNALDG---SYVGGIHPELILAAADSAEIADA 352

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>THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast precursor (ARA6)|
          Length = 349

 Score =  164 bits (414), Expect = 2e-40
 Identities = 87/109 (79%), Positives = 93/109 (85%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL+ IGMI  VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM
Sbjct: 244 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 303

Query: 379 MISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 233
           MISGQKA  LALKALG PN IDGTL      L PE++LAA ++A+ VDA
Sbjct: 304 MISGQKAGQLALKALGLPNAIDGTL---VGNLSPELVLAAADSAETVDA 349

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>THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 324

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 48/75 (64%), Positives = 61/75 (81%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL  +G I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM
Sbjct: 241 RLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAM 300

Query: 379 MISGQKAAHLALKAL 335
           ++SG KAA  ALK +
Sbjct: 301 VLSGLKAAEEALKVI 315

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>THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 320

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 47/73 (64%), Positives = 58/73 (79%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL  +  I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM
Sbjct: 237 RLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAM 296

Query: 379 MISGQKAAHLALK 341
            +SG KAA  ALK
Sbjct: 297 ALSGLKAAEEALK 309

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>THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 327

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 45/73 (61%), Positives = 57/73 (78%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL  +G +  + GM+ LDMN+AEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM
Sbjct: 244 RLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAM 303

Query: 379 MISGQKAAHLALK 341
           ++SG KAA  ALK
Sbjct: 304 VLSGVKAAEEALK 316

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>THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 338

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 40/77 (51%), Positives = 58/77 (75%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           R+   G+ + +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM
Sbjct: 249 RVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAM 308

Query: 379 MISGQKAAHLALKALGR 329
           ++SG++AA +AL++L R
Sbjct: 309 LLSGKRAAEVALQSLDR 325

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>THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 328

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 44/72 (61%), Positives = 51/72 (70%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           RL    ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG M
Sbjct: 243 RLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGM 302

Query: 379 MISGQKAAHLAL 344
           M SG KAA  AL
Sbjct: 303 MFSGIKAAQEAL 314

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>THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme|
          Length = 274

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 36/76 (47%), Positives = 53/76 (69%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           +L + GM++A   +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM
Sbjct: 187 KLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAM 245

Query: 379 MISGQKAAHLALKALG 332
           ++SG+KAA L  + LG
Sbjct: 246 LLSGEKAAALIGEKLG 261

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>THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme|
          Length = 255

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 35/70 (50%), Positives = 44/70 (62%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQ 365
           G+++ +PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+
Sbjct: 184 GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGR 243

Query: 364 KAAHLALKAL 335
           KAA   LK L
Sbjct: 244 KAAQEILKKL 253

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>THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme|
          Length = 251

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQ 365
           G+I+A+PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+
Sbjct: 180 GLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGR 239

Query: 364 KAAHLALKALGR 329
           KAA   L+ LG+
Sbjct: 240 KAALEILQKLGK 251

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>THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 34/71 (47%), Positives = 44/71 (61%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQ 365
           G+I+ +PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+
Sbjct: 181 GLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGR 240

Query: 364 KAAHLALKALG 332
           KAA   L+ LG
Sbjct: 241 KAAMEILQKLG 251

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>THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 35/70 (50%), Positives = 43/70 (61%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQ 365
           G+I+ +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+
Sbjct: 181 GLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGK 240

Query: 364 KAAHLALKAL 335
           KAA   L+ L
Sbjct: 241 KAAQEILEKL 250

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>THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 326

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 39/75 (52%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFG 386
           R+ DI   Q + GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFG
Sbjct: 248 RIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFG 307

Query: 385 AMMISGQKAAHLALK 341
           AM +SG  AA   LK
Sbjct: 308 AMALSGVHAAEQILK 322

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>THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme|
          Length = 250

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = -1

Query: 511 LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 335
           +D + AE  +V  T E+ PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct: 191 MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249

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>THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 31/75 (41%), Positives = 44/75 (58%)
 Frame = -1

Query: 559 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 380
           ++ ++G++    G K +     E   V  T+E+ PG+IV GM       APRMGP FG M
Sbjct: 187 KIGELGLL----GEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGM 242

Query: 379 MISGQKAAHLALKAL 335
           ++SG+KAA LAL  L
Sbjct: 243 LLSGEKAAKLALDRL 257

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>THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/63 (47%), Positives = 37/63 (58%)
 Frame = -1

Query: 523 GMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 344
           G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL
Sbjct: 195 GEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLAL 254

Query: 343 KAL 335
             L
Sbjct: 255 DRL 257

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>THI4_METTH (O27657) Putative thiazole biosynthetic enzyme|
          Length = 266

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 25/65 (38%), Positives = 41/65 (63%)
 Frame = -1

Query: 529 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 350
           + G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++SG++ A +
Sbjct: 201 IQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEM 260

Query: 349 ALKAL 335
            ++ L
Sbjct: 261 IIEKL 265

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>THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme|
          Length = 262

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = -1

Query: 553 QDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMI 374
           +D+G+   VPG K++  +  E+++ R TREV PG+ V GM         RMG  FG M +
Sbjct: 189 KDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYL 246

Query: 373 SGQKAAHLALKAL 335
           SG+K A L L+ L
Sbjct: 247 SGKKCAELILEKL 259

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>THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme|
          Length = 310

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)
 Frame = -1

Query: 526 PGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLA 347
           PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  
Sbjct: 227 PGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAV 286

Query: 346 LKAL 335
           +  L
Sbjct: 287 MDEL 290

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>THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)|
          Length = 48

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -1

Query: 496 AEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 404
           AED IV+  RE+VPGMIVTGMEVAEIDGAPR
Sbjct: 18  AEDLIVKGGREIVPGMIVTGMEVAEIDGAPR 48

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>THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 26/66 (39%), Positives = 38/66 (57%)
 Frame = -1

Query: 532 AVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAH 353
           +V G ++     AE  IV  T ++V G+   GM VA +   PRMGP FG M++SG+K A 
Sbjct: 193 SVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAE 252

Query: 352 LALKAL 335
           +  + L
Sbjct: 253 IVAEDL 258

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>THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme|
          Length = 263

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/65 (41%), Positives = 36/65 (55%)
 Frame = -1

Query: 529 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 350
           VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L
Sbjct: 195 VPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAEL 254

Query: 349 ALKAL 335
             + L
Sbjct: 255 ITEKL 259

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>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1228

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 317
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 878  ESGVIRVGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGF 935

Query: 316  DGTLKNV 296
            +GT+ ++
Sbjct: 936  EGTVIDI 942

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>RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 317
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 316  DGTLKNV 296
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 317
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 316  DGTLKNV 296
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -1

Query: 529  VPGMKALDM-NTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM---ISGQK 362
            +PG K  +  +  E  IVR+   V  GMI+ G    ++     + PT    +   I G+K
Sbjct: 865  IPGTKEAETAHLDESGIVRIGTYVSAGMILVG----KVSPKGEVKPTPEERLLRAIFGEK 920

Query: 361  AAHLALKALGRPNGIDGTLKNV 296
            A H+  K+L  P  ++GT+ +V
Sbjct: 921  AGHVVNKSLYCPPSLEGTVVDV 942

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>GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)|
          Length = 205

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 321 PFGRPRA---LSARCAAFWPEIIMAPKVGPILGAPSISATSMPVTIMPGTTSRVRR 479
           P G P A   L AR A  WP + + P V   LGAP+  + ++P  + PG+  R RR
Sbjct: 76  PCGPPEAAAGLGARLA--WP-LRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRR 128

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>ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate|
           aminotransferase (EC 2.6.1.-)
           (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)
           aminotransferase) (UDP-Ara4O aminotransferase)
           (Polymyxin resistance protein pmrH)
          Length = 382

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 493 EDAIVRLTREVVPGMIVTGMEVAEIDG--APRMGPTFGAMMISGQKAAHLALKALG 332
           ++ I  +TR +  G I TG E  +++   A R+G      + S   A H+AL ALG
Sbjct: 15  DEEIAAVTRVLRSGWITTGPECQKLEEEFAARVGARHAVALSSATGAMHVALLALG 70

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>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 317
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 316  DGTLKNV 296
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 317
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 316  DGTLKNV 296
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 386  AEGRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVLGRVHVKRLH 520
            ++G A   GT++ GD     N A   LAG AH  VL  +H  +LH
Sbjct: 2655 SQGAASQEGTMNRGDFLLSVNGA--SLAGLAHGNVLKVLHQAQLH 2697

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>YWS4_CAEEL (Q10940) Hypothetical protein B0310.4|
          Length = 112

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +2

Query: 371 GDHHGAE---GRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVL--GRVHVKRLHPG 526
           G+ H  E   G  H RG    G+ H G+ H  +   GE H G    G+ H    H G
Sbjct: 18  GETHRGETHRGETH-RGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRG 73

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>ENV_EIAV5 (P22430) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 860

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 536 CIERTHVFCHTGHPWNMSWGHLNEST 561

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>COBQ_MYCTU (P0A532) Cobyric acid synthase|
          Length = 494

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 404
           G +  V G+  LD+ TA     ++RL R           E+  G I  G    E  G  R
Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414

Query: 403 MGPTFGAM 380
            GP FG M
Sbjct: 415 DGPVFGTM 422

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>COBQ_MYCBO (P0A533) Cobyric acid synthase|
          Length = 494

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
 Frame = -1

Query: 544 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 404
           G +  V G+  LD+ TA     ++RL R           E+  G I  G    E  G  R
Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414

Query: 403 MGPTFGAM 380
            GP FG M
Sbjct: 415 DGPVFGTM 422

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>YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'region (ORF1)|
          Length = 735

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 446 NHARDDLAGEAHDGVLGRVHVKRLHPGHRLD 538
           NHA + + G   +GV+GR   + + P H +D
Sbjct: 213 NHAAEAIFGHTREGVIGRPMTETIIPAHYID 243

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>ENV_EIAVY (P06751) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAVW (P16082) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAVC (P32541) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV9 (P11306) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV3 (P22429) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV2 (P22428) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV1 (P22427) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 3   CYRRTH------HPWXLTWGRAEQST 62
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>EMRB_HAEIN (P44927) Multidrug resistance protein B homolog|
          Length = 510

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 234 ASTMSALLVAARIISGCSAG-VTFLSVPSMPFGRPRALSARCAAFWP-EIIMAPKVGPIL 407
           A ++ AL++  R+I G  AG V  LS   +    P        AFW   I++AP  GPIL
Sbjct: 103 ADSLEALIIF-RVIQGAVAGPVIPLSQSLLLNNYPPEKRGMALAFWSMTIVVAPIFGPIL 161

Query: 408 G 410
           G
Sbjct: 162 G 162

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>RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1370

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 493  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 317
            E  I+R+  EV PG I+ G    +  G  ++ P    +  I G+KA  +   +L  P G+
Sbjct: 875  ESGIIRIGAEVKPGDILVGKITPK--GETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGV 932

Query: 316  DGTL 305
            +GT+
Sbjct: 933  EGTV 936

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>PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)|
          Length = 694

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 295 TPALHPEMILAATNNADIVD 236
           TP LHPE I A    ADIVD
Sbjct: 3   TPRLHPETIAAVKERADIVD 22


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,683,880
Number of Sequences: 219361
Number of extensions: 1262630
Number of successful extensions: 4114
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 3951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4099
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result