Clone Name | rbah62e14 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463779.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1663 Score = 323 bits (163), Expect = 3e-85 Identities = 292/335 (87%) Strand = Plus / Minus Query: 180 agcttggaggatggcaggccgagttgcttggcgttaacgatgcttgggcaggcaggaggc 239 ||||| || ||||||||||||||||| ||||| ||||| ||||| ||||| |||| ||| Sbjct: 1306 agctttgacgatggcaggccgagttgtttggcattaacaatgctggggcaagcagctggc 1247 Query: 240 ggcgtcgcttcctcatcgaggaagggctccaccgcgttcgggttcccccacaccgggtac 299 ||||| || ||||| | ||| || |||||||| |||||||||||||| ||||| || Sbjct: 1246 ggcgttgcatcctccttgagaaatggctccactagattcgggttcccccaaaccggataa 1187 Query: 300 cccttgatcttaccaagcacgttcagagcagcgagtgttgccatcccttcacgcgtccac 359 ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||||||| Sbjct: 1186 cccttgatcttgccaagaacgtttagagcagcaagtgttgccattccttcgcgcgtccac 1127 Query: 360 ttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctggc 419 ||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || ||| Sbjct: 1126 ttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccgggc 1067 Query: 420 ttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagccttg 479 ||||||||||||||||||||||| ||||| || || || |||||||||||||| |||||| Sbjct: 1066 ttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggccttg 1007 Query: 480 aggtgctccaccagtgcaacctcatcgatcaccgg 514 ||||||||||||||||| |||||||| |||||||| Sbjct: 1006 aggtgctccaccagtgctacctcatcaatcaccgg 972
>dbj|AK067642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J23, full insert sequence Length = 1662 Score = 323 bits (163), Expect = 3e-85 Identities = 292/335 (87%) Strand = Plus / Minus Query: 180 agcttggaggatggcaggccgagttgcttggcgttaacgatgcttgggcaggcaggaggc 239 ||||| || ||||||||||||||||| ||||| ||||| ||||| ||||| |||| ||| Sbjct: 1307 agctttgacgatggcaggccgagttgtttggcattaacaatgctggggcaagcagctggc 1248 Query: 240 ggcgtcgcttcctcatcgaggaagggctccaccgcgttcgggttcccccacaccgggtac 299 ||||| || ||||| | ||| || |||||||| |||||||||||||| ||||| || Sbjct: 1247 ggcgttgcatcctccttgagaaatggctccactagattcgggttcccccaaaccggataa 1188 Query: 300 cccttgatcttaccaagcacgttcagagcagcgagtgttgccatcccttcacgcgtccac 359 ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||||||| Sbjct: 1187 cccttgatcttgccaagaacgtttagagcagcaagtgttgccattccttcgcgcgtccac 1128 Query: 360 ttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctggc 419 ||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || ||| Sbjct: 1127 ttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccgggc 1068 Query: 420 ttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagccttg 479 ||||||||||||||||||||||| ||||| || || || |||||||||||||| |||||| Sbjct: 1067 ttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggccttg 1008 Query: 480 aggtgctccaccagtgcaacctcatcgatcaccgg 514 ||||||||||||||||| |||||||| |||||||| Sbjct: 1007 aggtgctccaccagtgctacctcatcaatcaccgg 973
>dbj|AK072105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119J12, full insert sequence Length = 2837 Score = 307 bits (155), Expect = 2e-80 Identities = 290/335 (86%) Strand = Plus / Minus Query: 180 agcttggaggatggcaggccgagttgcttggcgttaacgatgcttgggcaggcaggaggc 239 ||||| || ||||||||||||||||| ||||| ||||| ||||| |||| |||| ||| Sbjct: 1234 agctttgacgatggcaggccgagttgtttggcattaacaatgctgtggcaagcagctggc 1175 Query: 240 ggcgtcgcttcctcatcgaggaagggctccaccgcgttcgggttcccccacaccgggtac 299 ||||| || ||||| | ||| || |||||||| |||||||||||||| ||||| || Sbjct: 1174 ggcgttgcatcctccttgagaaatggctccactagattcgggttcccccaaaccggataa 1115 Query: 300 cccttgatcttaccaagcacgttcagagcagcgagtgttgccatcccttcacgcgtccac 359 ||||||||||| ||||| ||||| |||||| | ||||||||||| ||||| ||||||||| Sbjct: 1114 cccttgatcttgccaagaacgtttagagcaacaagtgttgccattccttcgcgcgtccac 1055 Query: 360 ttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctggc 419 ||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || ||| Sbjct: 1054 ttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccgggc 995 Query: 420 ttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagccttg 479 ||||||||||||||||||||||| ||||| || || || |||||||||||||| |||||| Sbjct: 994 ttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggccttg 935 Query: 480 aggtgctccaccagtgcaacctcatcgatcaccgg 514 ||||||||||||||||| |||||||| |||||||| Sbjct: 934 aggtgctccaccagtgctacctcatcaatcaccgg 900
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 190 bits (96), Expect = 3e-45 Identities = 141/156 (90%) Strand = Plus / Plus Query: 359 cttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctgg 418 |||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || || Sbjct: 80726 cttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccggg 80785 Query: 419 cttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagcctt 478 |||||||||||||||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct: 80786 cttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggcctt 80845 Query: 479 gaggtgctccaccagtgcaacctcatcgatcaccgg 514 |||||||||||||||||| |||||||| |||||||| Sbjct: 80846 gaggtgctccaccagtgctacctcatcaatcaccgg 80881 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 198 ccgagttgcttggcgttaacgatgcttgggcaggcaggaggcggcgtcgcttcctcatcg 257 |||||||| ||||| ||||| ||||| ||||| |||| |||||||| || ||||| | | Sbjct: 80193 ccgagttgtttggcattaacaatgctggggcaagcagctggcggcgttgcatcctccttg 80252 Query: 258 aggaagggctccaccgcgttcgggttcccccacaccgggtaccccttgatctt 310 || || |||||||| |||||||||||||| ||||| || ||||||||||| Sbjct: 80253 agaaatggctccactagattcgggttcccccaaaccggataacccttgatctt 80305 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 313 caagcacgttcagagcagcgagtgttgccatcccttcacgcgtccact 360 |||| ||||| |||||||| ||||||||||| ||||| |||||||||| Sbjct: 80479 caagaacgtttagagcagcaagtgttgccattccttcgcgcgtccact 80526 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tactccgtagtagtagtagt 109 |||||||||||||||||||| Sbjct: 30660327 tactccgtagtagtagtagt 30660346
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 190 bits (96), Expect = 3e-45 Identities = 141/156 (90%) Strand = Plus / Plus Query: 359 cttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctgg 418 |||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || || Sbjct: 75335 cttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccggg 75394 Query: 419 cttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagcctt 478 |||||||||||||||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct: 75395 cttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggcctt 75454 Query: 479 gaggtgctccaccagtgcaacctcatcgatcaccgg 514 |||||||||||||||||| |||||||| |||||||| Sbjct: 75455 gaggtgctccaccagtgctacctcatcaatcaccgg 75490 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 198 ccgagttgcttggcgttaacgatgcttgggcaggcaggaggcggcgtcgcttcctcatcg 257 |||||||| ||||| ||||| ||||| ||||| |||| |||||||| || ||||| | | Sbjct: 74802 ccgagttgtttggcattaacaatgctggggcaagcagctggcggcgttgcatcctccttg 74861 Query: 258 aggaagggctccaccgcgttcgggttcccccacaccgggtaccccttgatctt 310 || || |||||||| |||||||||||||| ||||| || ||||||||||| Sbjct: 74862 agaaatggctccactagattcgggttcccccaaaccggataacccttgatctt 74914 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 313 caagcacgttcagagcagcgagtgttgccatcccttcacgcgtccact 360 |||| ||||| |||||||| ||||||||||| ||||| |||||||||| Sbjct: 75088 caagaacgtttagagcagcaagtgttgccattccttcgcgcgtccact 75135
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 190 bits (96), Expect = 3e-45 Identities = 141/156 (90%) Strand = Plus / Plus Query: 359 cttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctgg 418 |||||| |||||||| |||||||| |||||||||||||||||||| ||||| || || || Sbjct: 29753 cttggaggcagatgcgatgtgaggtacgacgacggcattcttcatgtcagcgaggccggg 29812 Query: 419 cttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggttagcctt 478 |||||||||||||||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct: 29813 cttcatgtaaggctcatcctcaaacacatcaagaccgacgcggaacatggggttggcctt 29872 Query: 479 gaggtgctccaccagtgcaacctcatcgatcaccgg 514 |||||||||||||||||| |||||||| |||||||| Sbjct: 29873 gaggtgctccaccagtgctacctcatcaatcaccgg 29908 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 198 ccgagttgcttggcgttaacgatgcttgggcaggcaggaggcggcgtcgcttcctcatcg 257 |||||||| ||||| ||||| ||||| ||||| |||| |||||||| || ||||| | | Sbjct: 29220 ccgagttgtttggcattaacaatgctggggcaagcagctggcggcgttgcatcctccttg 29279 Query: 258 aggaagggctccaccgcgttcgggttcccccacaccgggtaccccttgatctt 310 || || |||||||| |||||||||||||| ||||| || ||||||||||| Sbjct: 29280 agaaatggctccactagattcgggttcccccaaaccggataacccttgatctt 29332 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 313 caagcacgttcagagcagcgagtgttgccatcccttcacgcgtccact 360 |||| ||||| |||||||| ||||||||||| ||||| |||||||||| Sbjct: 29506 caagaacgtttagagcagcaagtgttgccattccttcgcgcgtccact 29553
>emb|AJ234416.1|HVU234416 Hordeum vulgare partial mRNA; clone cMWG0679.uni Length = 228 Score = 147 bits (74), Expect = 4e-32 Identities = 77/78 (98%) Strand = Plus / Minus Query: 466 tggggttagccttgaggtgctccaccagtgcaacctcatcgatcaccgggccacggctcg 525 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 228 tggggttagccttgaggtgctccaccagtgcaacctcgtcgatcaccgggccacggctcg 169 Query: 526 cgttcaccagcactgcct 543 |||||||||||||||||| Sbjct: 168 cgttcaccagcactgcct 151
>emb|AJ234417.1|HVU234417 Hordeum vulgare partial mRNA; clone cMWG0679.rev Length = 137 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 1 tactactaccccatgaagatgagtgcattcatacatatatactggcaaggagctatatac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 tactactaccccatgaagatgagtgcattcatacatatatactggcaaggagctatatac 131 Query: 61 gcatag 66 |||||| Sbjct: 132 gcatag 137
>dbj|AB060810.1| Bruguiera gymnorhiza HPR mRNA for hydroxypyruvate reductase, complete cds Length = 1576 Score = 123 bits (62), Expect = 6e-25 Identities = 125/146 (85%) Strand = Plus / Minus Query: 321 ttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatgtga 380 ||||||||||| || || ||||| ||||| || |||||||| || ||||| |||||||| Sbjct: 1050 ttcagagcagctagagtcgccattccttcgcgagtccactttgaagcagaagcaatgtgg 991 Query: 381 ggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcctca 440 |||||||| | |||||||||||| || || |||||||||||||||||||| || ||||| Sbjct: 990 ggcacgacaatggcattcttcatgtcggcaagccctggcttcatgtaaggttcgtcctcg 931 Query: 441 aaaacatcgaggccaacacggaacat 466 || ||||| |||||||| |||||||| Sbjct: 930 aagacatcaaggccaacccggaacat 905
>gb|AF503360.1| Glycine max clone P42-1 putative NADH-dependent hydroxypyruvate reductase mRNA, complete cds Length = 1492 Score = 117 bits (59), Expect = 4e-23 Identities = 149/179 (83%) Strand = Plus / Minus Query: 294 gggtaccccttgatcttaccaagcacgttcagagcagcgagtgttgccatcccttcacgc 353 |||||||| |||||||| || |||||||| ||||| || ||||| ||||| || ||||| Sbjct: 1087 gggtaccctttgatcttccccagcacgtttagagctgctagtgtagccattccctcacga 1028 Query: 354 gtccacttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagc 413 ||||||||||| |||||||||||||| || || || | ||||||||||| ||| || ||| Sbjct: 1027 gtccacttggaggcagatgcaatgtggggtaccacaatggcattcttcaactctgcaagc 968 Query: 414 cctggcttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| || || ||||| || || ||||| ||||| Sbjct: 967 ccgggtttcatgtagggctcttcctcaaacacgtcaaggcctactcgaaacatcgggtt 909
>emb|X14609.1|CSNDHR Cucumis sativus mRNA for NAPH-dependent hydroxypyruvate reductase (EC 1.1.1.29) Length = 1437 Score = 115 bits (58), Expect = 2e-22 Identities = 124/146 (84%) Strand = Plus / Minus Query: 324 agagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatgtgaggc 383 |||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||||||||| Sbjct: 1053 agagcagccagtgttgccattccttcgcgagtccacttggaagcagaagcaatgtgagga 994 Query: 384 acgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcctcaaaa 443 || | || || |||||||| ||||| || || || |||||||| || |||||||||||| Sbjct: 993 acaatgatcgcgttcttcatatcagcaagtccaggtttcatgtatggttcatcctcaaaa 934 Query: 444 acatcgaggccaacacggaacatggg 469 ||||| |||||||| || |||||||| Sbjct: 933 acatcaaggccaactcgaaacatggg 908
>gb|AF503361.1| Glycine max clone P42-2 putative NADH-dependent hydroxypyruvate reductase mRNA, complete cds Length = 1414 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Minus Query: 294 gggtaccccttgatcttaccaagcacgttcagagcagcgagtgttgccatcccttcacgc 353 |||||||| || | ||| || |||||||| ||||| || ||||| ||||| || ||||| Sbjct: 1085 gggtaccctttaaccttccccagcacgtttagagctgctagtgtagccattccctcacga 1026 Query: 354 gtccacttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagc 413 ||||||||||| |||||||||||||| || || || | ||||||||||| ||| || ||| Sbjct: 1025 gtccacttggaggcagatgcaatgtggggtaccacaatggcattcttcaactctgcaagc 966 Query: 414 cctggcttcatgtaaggctcatcctcaaaaacatcgaggccaacacggaacatggggtta 473 || || |||||||| ||||| |||||||| ||||| ||||| || || ||||| |||||| Sbjct: 965 ccaggtttcatgtagggctcttcctcaaacacatcaaggcctactcgaaacattgggtta 906
>dbj|D49433.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyruvate reductase, complete cds Length = 1362 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 339 gccatcccttcacgcgtccacttggacgcagatgcaatgtgaggcacgacgacggcattc 398 ||||| |||||||| ||||||||||| || || ||||||||||| || | || |||||| Sbjct: 1028 gccattccttcacgagtccacttggaagcggaagcaatgtgaggtacaatgatcgcattc 969 Query: 399 ttcatctcagccagccctggcttcatgtaaggctcatcctcaaaaacatcgaggccaaca 458 ||||| ||||| ||||| || |||||||| || |||||||| || |||||||||||||| Sbjct: 968 ttcatatcagcaagcccaggtttcatgtatggttcatcctcgaagacatcgaggccaact 909 Query: 459 cggaacat 466 || ||||| Sbjct: 908 cgaaacat 901
>dbj|D49432.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyruvate reductase, complete cds Length = 1269 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 339 gccatcccttcacgcgtccacttggacgcagatgcaatgtgaggcacgacgacggcattc 398 ||||| |||||||| ||||||||||| || || ||||||||||| || | || |||||| Sbjct: 1028 gccattccttcacgagtccacttggaagcggaagcaatgtgaggtacaatgatcgcattc 969 Query: 399 ttcatctcagccagccctggcttcatgtaaggctcatcctcaaaaacatcgaggccaaca 458 ||||| ||||| ||||| || |||||||| || |||||||| || |||||||||||||| Sbjct: 968 ttcatatcagcaagcccaggtttcatgtatggttcatcctcgaagacatcgaggccaact 909 Query: 459 cggaacat 466 || ||||| Sbjct: 908 cgaaacat 901
>dbj|D85339.1| Arabidopsis thaliana mRNA for hydroxypyruvate reductase, complete cds Length = 1428 Score = 93.7 bits (47), Expect = 6e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1099 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 1040 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||||| ||||| |||||||| |||||| | ||||| ||| Sbjct: 1039 tgaggaacaacaatagcgtttttcatatcagcaagccctggtttcatgaatggctcttcc 980 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 979 tcgaacacatcgagaccaactcggaacatcgggtt 945
>ref|NM_105471.2| Arabidopsis thaliana HPR; oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor AT1G68010 (HPR) mRNA, complete cds Length = 1494 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1084 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 1025 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||| | ||||| |||||||| |||||| | ||||| ||| Sbjct: 1024 tgaggaacaacaatagcgtttttcgtatcagcaagccctggtttcatgaatggctcttcc 965 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 964 tcgaacacatcgagaccaactcggaacatcgggtt 930
>gb|AY113871.1| Arabidopsis thaliana putative hydroxypyruvate reductase (At1g68010) mRNA, complete cds Length = 1192 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1019 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 960 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||| | ||||| |||||||| |||||| | ||||| ||| Sbjct: 959 tgaggaacaacaatagcgtttttcgtatcagcaagccctggtttcatgaatggctcttcc 900 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 899 tcgaacacatcgagaccaactcggaacatcgggtt 865
>gb|AF370221.1| Arabidopsis thaliana putative hydroxypyruvate reductase HPR (At1g68010) mRNA, complete cds Length = 1417 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1084 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 1025 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||| | ||||| |||||||| |||||| | ||||| ||| Sbjct: 1024 tgaggaacaacaatagcgtttttcgtatcagcaagccctggtttcatgaatggctcttcc 965 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 964 tcgaacacatcgagaccaactcggaacatcgggtt 930
>gb|AY099552.1| Arabidopsis thaliana hydroxypyruvate reductase (HPR) (At1g68010) mRNA, complete cds Length = 1376 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1076 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 1017 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||| | ||||| |||||||| |||||| | ||||| ||| Sbjct: 1016 tgaggaacaacaatagcgtttttcgtatcagcaagccctggtttcatgaatggctcttcc 957 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 956 tcgaacacatcgagaccaactcggaacatcgggtt 922
>gb|BT001237.1| Arabidopsis thaliana hydroxypyruvate reductase (HPR) (At1g68010) mRNA, complete cds Length = 1194 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 318 acgttcagagcagcgagtgttgccatcccttcacgcgtccacttggacgcagatgcaatg 377 ||||| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1019 acgttgagagctgcaagcgtagccattccttcacgagtccacttggaagcagaagcaatg 960 Query: 378 tgaggcacgacgacggcattcttcatctcagccagccctggcttcatgtaaggctcatcc 437 ||||| || || | || || ||| | ||||| |||||||| |||||| | ||||| ||| Sbjct: 959 tgaggaacaacaatagcgtttttcgtatcagcaagccctggtttcatgaatggctcttcc 900 Query: 438 tcaaaaacatcgaggccaacacggaacatggggtt 472 || || |||||||| ||||| |||||||| ||||| Sbjct: 899 tcgaacacatcgagaccaactcggaacatcgggtt 865
>emb|BX814872.1|CNS0ABHT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS14ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1321 Score = 81.8 bits (41), Expect = 2e-12 Identities = 110/133 (82%) Strand = Plus / Minus Query: 340 ccatcccttcacgcgtccacttggacgcagatgcaatgtgaggcacgacgacggcattct 399 |||| |||||||| ||||||||||| ||||| ||||||||||| || || | || || | Sbjct: 1027 ccattccttcacgagtccacttggaagcagaagcaatgtgaggaacaacaatagcgtttt 968 Query: 400 tcatctcagccagccctggcttcatgtaaggctcatcctcaaaaacatcgaggccaacac 459 || | ||||| |||||||| |||||| | ||||| ||||| || |||||||| ||||| | Sbjct: 967 tcgtatcagcaagccctggtttcatgaatggctcttcctcgaacacatcgagaccaactc 908 Query: 460 ggaacatggggtt 472 ||||||| ||||| Sbjct: 907 ggaacatcgggtt 895
>ref|XM_633808.1| Dictyostelium discoideum hypothetical protein (DDB0185716), partial mRNA Length = 2856 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 gtagtagtagtagtgattcatc 117 |||||||||||||||||||||| Sbjct: 2453 gtagtagtagtagtgattcatc 2474
>emb|X58542.1|CSHPRAG C.sativus hpr-A gene for NADH-dependent hydroxypyruvate reductase Length = 6740 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 436 cctcaaaaacatcgaggccaacacggaacatggg 469 ||||||||||||| |||||||| || |||||||| Sbjct: 4057 cctcaaaaacatcaaggccaactcgaaacatggg 4024 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 324 agagcagcgagtgttgccatcccttcacgcgtccact 360 |||||||| ||||||||||| ||||| || ||||||| Sbjct: 4574 agagcagccagtgttgccattccttcgcgagtccact 4538 Score = 40.1 bits (20), Expect = 7.4 Identities = 65/80 (81%) Strand = Plus / Minus Query: 359 cttggacgcagatgcaatgtgaggcacgacgacggcattcttcatctcagccagccctgg 418 |||||| ||||| ||||||||||| || | || || |||||||| ||||| || || || Sbjct: 4460 cttggaagcagaagcaatgtgaggaacaatgatcgcgttcttcatatcagcaagtccagg 4401 Query: 419 cttcatgtaaggctcatcct 438 |||||||| || ||||||| Sbjct: 4400 tttcatgtatggttcatcct 4381
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 taaggctcatcctcaaaaacatcga 450 |||||||| |||||||||||||||| Sbjct: 1676879 taaggctcttcctcaaaaacatcga 1676855
>ref|XM_483673.1| Oryza sativa (japonica cultivar-group), mRNA Length = 426 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ccttcatctccgcctccgcctccg 141 |||||| ||||||||||||||||| Sbjct: 203 ccttcacctccgcctccgcctccg 226
>ref|NM_196409.1| Oryza sativa (japonica cultivar-group) putative homeotic protein (OSJNBb0044I14.6), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 629 gcaggcaggaggcggcgtcg 648
>ref|XM_463512.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1803 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctccgcctccgcctccgtag 144 |||||||||||||||||||| Sbjct: 274 ctccgcctccgcctccgtag 255
>ref|NM_190740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2940 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ccttcatctccgcctccgcctccg 141 ||||| |||||||||||||||||| Sbjct: 290 ccttcgtctccgcctccgcctccg 267
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgcattcatacatatatact 43 |||||||||||||||||||| Sbjct: 139770 tgcattcatacatatatact 139789
>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188458 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cggaacatggggttagccttgagg 482 |||||||||||| ||||||||||| Sbjct: 37192 cggaacatggggctagccttgagg 37215
>gb|AC168276.3| Mus musculus BAC RP24-485I12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186675 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cggaacatggggttagccttgagg 482 |||||||||||| ||||||||||| Sbjct: 151095 cggaacatggggctagccttgagg 151118
>ref|XM_385185.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05009.1) partial mRNA Length = 1284 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tactaccccatgaagatgag 23 |||||||||||||||||||| Sbjct: 653 tactaccccatgaagatgag 672
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 136736 gcaggcaggaggcggcgtcg 136755
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 39806 gcaggcaggaggcggcgtcg 39787
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgcattcatacatatatact 43 |||||||||||||||||||| Sbjct: 11070 tgcattcatacatatatact 11089
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 427 aaggctcatcctcaaaaacatcgaggcc 454 ||||| |||||||| ||||||||||||| Sbjct: 647546 aaggcccatcctcacaaacatcgaggcc 647519
>gb|AC010418.6|AC010418 Homo sapiens chromosome 5 clone CTD-2177G22, complete sequence Length = 88018 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ggtaccccttgatcttacca 314 |||||||||||||||||||| Sbjct: 7864 ggtaccccttgatcttacca 7883
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 21366036 catctccgcctccgcctccg 21366055
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 13290487 gcaggcaggaggcggcgtcg 13290506
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ccttcatctccgcctccgcctccg 141 |||||| ||||||||||||||||| Sbjct: 27579059 ccttcacctccgcctccgcctccg 27579082
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctccgcctccgcctccgtag 144 |||||||||||||||||||| Sbjct: 37956404 ctccgcctccgcctccgtag 37956385 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ccttcatctccgcctccgcctccg 141 ||||| |||||||||||||||||| Sbjct: 37448923 ccttcgtctccgcctccgcctccg 37448900 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 4890566 catctccgcctccgcctccg 4890585
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ccttcatctccgcctccgcctccg 141 ||||| |||||||||||||||||| Sbjct: 43460 ccttcgtctccgcctccgcctccg 43437
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctccgcctccgcctccgtag 144 |||||||||||||||||||| Sbjct: 37348 ctccgcctccgcctccgtag 37329
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tactccgtagtagtagtagt 109 |||||||||||||||||||| Sbjct: 474 tactccgtagtagtagtagt 493
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 135215 catctccgcctccgcctccg 135234
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 895359 gcaggcaggaggcggcgtcg 895340
>gb|AC018765.4|AC018765 Homo sapiens chromosome 5 clone CTD-2351A16, complete sequence Length = 132916 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtaccccttgatcttacca 314 |||||||||||||||||||| Sbjct: 110410 ggtaccccttgatcttacca 110391
>emb|AL805898.11| Mouse DNA sequence from clone RP23-432F24 on chromosome 4, complete sequence Length = 215828 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 123198 catctccgcctccgcctccg 123179
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tactccgtagtagtagtagt 109 |||||||||||||||||||| Sbjct: 172335 tactccgtagtagtagtagt 172354
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ccttcatctccgcctccgcctccg 141 |||||| ||||||||||||||||| Sbjct: 61349 ccttcacctccgcctccgcctccg 61372
>dbj|AK103554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132G05, full insert sequence Length = 2348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctccgcctccgcctccgtag 144 |||||||||||||||||||| Sbjct: 583 ctccgcctccgcctccgtag 564
>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full insert sequence Length = 2012 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 51 catctccgcctccgcctccg 70
>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full insert sequence Length = 1991 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 45 catctccgcctccgcctccg 64
>ref|NM_208920.1| Eremothecium gossypii ACR165Wp (ACR165W), mRNA Length = 3420 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 427 aaggctcatcctcaaaaacatcgaggcc 454 ||||| |||||||| ||||||||||||| Sbjct: 3318 aaggcccatcctcacaaacatcgaggcc 3291
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 509 caccgggccacggctcgcgttcaccagc 536 ||||||||||||||| ||||| |||||| Sbjct: 2415951 caccgggccacggctggcgtttaccagc 2415924
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgagttgcttggcgttaacg 218 |||||||||||||||||||| Sbjct: 1799896 cgagttgcttggcgttaacg 1799915
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gcaggcaggaggcggcgtcg 246 |||||||||||||||||||| Sbjct: 13297827 gcaggcaggaggcggcgtcg 13297846
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catctccgcctccgcctccg 141 |||||||||||||||||||| Sbjct: 21292255 catctccgcctccgcctccg 21292274
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctccgcctccgcctccgtag 144 |||||||||||||||||||| Sbjct: 52680 ctccgcctccgcctccgtag 52661 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,314,241 Number of Sequences: 3902068 Number of extensions: 4314241 Number of successful extensions: 140735 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139866 Number of HSP's gapped (non-prelim): 866 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)