Clone Name | rbah61p07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107758.1| Zea mays PCO143163 mRNA sequence Length = 1380 Score = 266 bits (134), Expect = 7e-68 Identities = 212/238 (89%) Strand = Plus / Minus Query: 276 aaaaatgtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctct 335 |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||| Sbjct: 967 aaaaatgtgacaacatctctcgtatatcccctaactattaacatgcgtgggacattctct 908 Query: 336 acaagcatatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggaggg 395 ||||||| ||||||||||||||||||||| |||||||| || || || ||||| || || Sbjct: 907 acaagcaaatccatgtactccatgtagaaatatgcaggatgatttagtggtggtggtgga 848 Query: 396 aggctcaccagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttc 455 |||||||| || || ||||||||||| ||||||| ||||||||||||||||||||| ||| Sbjct: 847 aggctcacaagaactacagctgccattctggagtacctgagtatcgtggagttcaatttc 788 Query: 456 aacattgtgtagaggaatttatcgaccttttgttcgttcacaacagcttgcttcccat 513 ||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||| |||||| Sbjct: 787 aacattgtgtaaaggaatttatcaaccttctgttcattcacaacaacttgcctcccat 730
>ref|XM_481609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2970 Score = 258 bits (130), Expect = 2e-65 Identities = 262/306 (85%) Strand = Plus / Minus Query: 279 aatgtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctaca 338 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 2960 aatgtgacaacatctcttctgtatcccctaactatcaacatgcgtgggacgttctctaca 2901 Query: 339 agcatatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggagg 398 |||| ||||||||||||||||||||| || |||||||| || | ||||| ||||||||| Sbjct: 2900 agcagatccatgtactccatgtagaaatacgcagggtgatttaatggtggtggagggagg 2841 Query: 399 ctcaccagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaac 458 || || || |||||||||||||| ||||||| ||| ||||| || ||||||| ||| ||| Sbjct: 2840 cttacgaggaccacagctgccattctggagtacctaagtattgtcgagttcagcttgaac 2781 Query: 459 attgtgtagaggaatttatcgaccttttgttcgttcacaacagcttgcttcccatccacc 518 ||||| ||||||||||| || | ||| ||||| |||||||| ||||||| || ||| || Sbjct: 2780 attgtatagaggaatttctcaatcttctgttcattcacaactacttgctttccgtcctcc 2721 Query: 519 atctgcggccggccttctctttctgtggtttccttcatctcggaaaggtatgcactgatc 578 || | || | |||||||||| || |||||||||||||| || ||||||| |||||| Sbjct: 2720 attagtggatgtccttctctttgtgcagtttccttcatctcagagaggtatgtgctgatc 2661 Query: 579 cttcgc 584 |||||| Sbjct: 2660 cttcgc 2655
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 258 bits (130), Expect = 2e-65 Identities = 262/306 (85%) Strand = Plus / Plus Query: 279 aatgtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctaca 338 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 14179399 aatgtgacaacatctcttctgtatcccctaactatcaacatgcgtgggacgttctctaca 14179458 Query: 339 agcatatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggagg 398 |||| ||||||||||||||||||||| || |||||||| || | ||||| ||||||||| Sbjct: 14179459 agcagatccatgtactccatgtagaaatacgcagggtgatttaatggtggtggagggagg 14179518 Query: 399 ctcaccagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaac 458 || || || |||||||||||||| ||||||| ||| ||||| || ||||||| ||| ||| Sbjct: 14179519 cttacgaggaccacagctgccattctggagtacctaagtattgtcgagttcagcttgaac 14179578 Query: 459 attgtgtagaggaatttatcgaccttttgttcgttcacaacagcttgcttcccatccacc 518 ||||| ||||||||||| || | ||| ||||| |||||||| ||||||| || ||| || Sbjct: 14179579 attgtatagaggaatttctcaatcttctgttcattcacaactacttgctttccgtcctcc 14179638 Query: 519 atctgcggccggccttctctttctgtggtttccttcatctcggaaaggtatgcactgatc 578 || | || | |||||||||| || |||||||||||||| || ||||||| |||||| Sbjct: 14179639 attagtggatgtccttctctttgtgcagtttccttcatctcagagaggtatgtgctgatc 14179698 Query: 579 cttcgc 584 |||||| Sbjct: 14179699 cttcgc 14179704
>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03 Length = 176593 Score = 258 bits (130), Expect = 2e-65 Identities = 262/306 (85%) Strand = Plus / Plus Query: 279 aatgtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctaca 338 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 83688 aatgtgacaacatctcttctgtatcccctaactatcaacatgcgtgggacgttctctaca 83747 Query: 339 agcatatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggagg 398 |||| ||||||||||||||||||||| || |||||||| || | ||||| ||||||||| Sbjct: 83748 agcagatccatgtactccatgtagaaatacgcagggtgatttaatggtggtggagggagg 83807 Query: 399 ctcaccagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaac 458 || || || |||||||||||||| ||||||| ||| ||||| || ||||||| ||| ||| Sbjct: 83808 cttacgaggaccacagctgccattctggagtacctaagtattgtcgagttcagcttgaac 83867 Query: 459 attgtgtagaggaatttatcgaccttttgttcgttcacaacagcttgcttcccatccacc 518 ||||| ||||||||||| || | ||| ||||| |||||||| ||||||| || ||| || Sbjct: 83868 attgtatagaggaatttctcaatcttctgttcattcacaactacttgctttccgtcctcc 83927 Query: 519 atctgcggccggccttctctttctgtggtttccttcatctcggaaaggtatgcactgatc 578 || | || | |||||||||| || |||||||||||||| || ||||||| |||||| Sbjct: 83928 attagtggatgtccttctctttgtgcagtttccttcatctcagagaggtatgtgctgatc 83987 Query: 579 cttcgc 584 |||||| Sbjct: 83988 cttcgc 83993
>dbj|AK060470.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E02, full insert sequence Length = 1383 Score = 258 bits (130), Expect = 2e-65 Identities = 262/306 (85%) Strand = Plus / Minus Query: 279 aatgtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctaca 338 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 913 aatgtgacaacatctcttctgtatcccctaactatcaacatgcgtgggacgttctctaca 854 Query: 339 agcatatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggagg 398 |||| ||||||||||||||||||||| || |||||||| || | ||||| ||||||||| Sbjct: 853 agcagatccatgtactccatgtagaaatacgcagggtgatttaatggtggtggagggagg 794 Query: 399 ctcaccagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaac 458 || || || |||||||||||||| ||||||| ||| ||||| || ||||||| ||| ||| Sbjct: 793 cttacgaggaccacagctgccattctggagtacctaagtattgtcgagttcagcttgaac 734 Query: 459 attgtgtagaggaatttatcgaccttttgttcgttcacaacagcttgcttcccatccacc 518 ||||| ||||||||||| || | ||| ||||| |||||||| ||||||| || ||| || Sbjct: 733 attgtatagaggaatttctcaatcttctgttcattcacaactacttgctttccgtcctcc 674 Query: 519 atctgcggccggccttctctttctgtggtttccttcatctcggaaaggtatgcactgatc 578 || | || | |||||||||| || |||||||||||||| || ||||||| |||||| Sbjct: 673 attagtggatgtccttctctttgtgcagtttccttcatctcagagaggtatgtgctgatc 614 Query: 579 cttcgc 584 |||||| Sbjct: 613 cttcgc 608
>ref|NM_189287.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3813 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Minus Query: 282 gtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctacaagc 341 ||||| ||||||||||| |||||||| ||||||| || | |||| ||||||||||||| Sbjct: 3800 gtgacgacatctcttctgtatcccctaactatcaggatcctcgggatgttctctacaagc 3741 Query: 342 atatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggaggctc 401 | ||||||||||||||||||| ||||||| |||||||||| |||||||| || |||||| Sbjct: 3740 agatccatgtactccatgtagcagtatgccaggtggttcagtggtggcggtggaaggctc 3681 Query: 402 accagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaacatt 461 || |||||||| ||||||||||||||||||| || || || | ||||| ||||| ||| Sbjct: 3680 acgagcaccacgactgccatcctggagtgcctaaggatagtagcgttcagcttcagcatc 3621 Query: 462 gtgtagaggaatttatcgaccttttgttc 490 ||||||||||| || || ||||| ||||| Sbjct: 3620 gtgtagaggaacttttcaaccttctgttc 3592
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 282 gtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctacaagc 341 ||||| ||||||||||| |||||||| ||||||| || | |||| ||||||||||||| Sbjct: 11252233 gtgacgacatctcttctgtatcccctaactatcaggatcctcgggatgttctctacaagc 11252292 Query: 342 atatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggaggctc 401 | ||||||||||||||||||| ||||||| |||||||||| |||||||| || |||||| Sbjct: 11252293 agatccatgtactccatgtagcagtatgccaggtggttcagtggtggcggtggaaggctc 11252352 Query: 402 accagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaacatt 461 || |||||||| ||||||||||||||||||| || || || | ||||| ||||| ||| Sbjct: 11252353 acgagcaccacgactgccatcctggagtgcctaaggatagtagcgttcagcttcagcatc 11252412 Query: 462 gtgtagaggaatttatcgaccttttgttc 490 ||||||||||| || || ||||| ||||| Sbjct: 11252413 gtgtagaggaacttttcaaccttctgttc 11252441
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 282 gtgacaacatctcttctatatcccctgactatcaacatgcgtgggacgttctctacaagc 341 ||||| ||||||||||| |||||||| ||||||| || | |||| ||||||||||||| Sbjct: 39638 gtgacgacatctcttctgtatcccctaactatcaggatcctcgggatgttctctacaagc 39697 Query: 342 atatccatgtactccatgtagaagtatgcagggtggttcagcggtggcggagggaggctc 401 | ||||||||||||||||||| ||||||| |||||||||| |||||||| || |||||| Sbjct: 39698 agatccatgtactccatgtagcagtatgccaggtggttcagtggtggcggtggaaggctc 39757 Query: 402 accagcaccacagctgccatcctggagtgcctgagtatcgtggagttcaacttcaacatt 461 || |||||||| ||||||||||||||||||| || || || | ||||| ||||| ||| Sbjct: 39758 acgagcaccacgactgccatcctggagtgcctaaggatagtagcgttcagcttcagcatc 39817 Query: 462 gtgtagaggaatttatcgaccttttgttc 490 ||||||||||| || || ||||| ||||| Sbjct: 39818 gtgtagaggaacttttcaaccttctgttc 39846
>gb|AF021220.1|AF021220 Nicotiana tabacum cation-chloride co-transporter mRNA, complete cds Length = 3456 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 345 tccatgtactccatgtagaagtatgcagg 373 ||||||||||||||||||||| ||||||| Sbjct: 3164 tccatgtactccatgtagaaggatgcagg 3136
>gb|AF227153.1| Crotalus atrox serine protease catroxase I precursor, mRNA, complete cds Length = 921 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 288 acatctcttctatatcccctgac 310 ||||||||||||||||||||||| Sbjct: 818 acatctcttctatatcccctgac 840
>ref|NM_179401.1| Arabidopsis thaliana CCC1; cation:chloride symporter AT1G30450 (CCC1) transcript variant AT1G30450.3 mRNA, complete cds Length = 3260 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 312 atcaacatgcgtgggacgttctctacaagcatatccatgtactccatgtagaagtatgca 371 |||||||| | ||| || ||||| || |||| |||||| || ||||||||||| || || Sbjct: 3051 atcaacatccttggcacattctccaccagcaaatccatatattccatgtagaaatacgcc 2992 Query: 372 gggtggttcagcggtggcggagggaggctcaccagcaccacagctgccat 421 ||||| |||| ||| || || ||||| || ||||| ||||| || ||||| Sbjct: 2991 gggtgattcaacggaggtggcgggagactaaccagaaccactgcggccat 2942
>ref|NM_102781.2| Arabidopsis thaliana CCC1; cation:chloride symporter AT1G30450 (CCC1) transcript variant AT1G30450.1 mRNA, complete cds Length = 3409 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 312 atcaacatgcgtgggacgttctctacaagcatatccatgtactccatgtagaagtatgca 371 |||||||| | ||| || ||||| || |||| |||||| || ||||||||||| || || Sbjct: 3051 atcaacatccttggcacattctccaccagcaaatccatatattccatgtagaaatacgcc 2992 Query: 372 gggtggttcagcggtggcggagggaggctcaccagcaccacagctgccat 421 ||||| |||| ||| || || ||||| || ||||| ||||| || ||||| Sbjct: 2991 gggtgattcaacggaggtggcgggagactaaccagaaccactgcggccat 2942
>ref|NM_179400.1| Arabidopsis thaliana CCC1; cation:chloride symporter AT1G30450 (CCC1) transcript variant AT1G30450.2 mRNA, complete cds Length = 3432 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 312 atcaacatgcgtgggacgttctctacaagcatatccatgtactccatgtagaagtatgca 371 |||||||| | ||| || ||||| || |||| |||||| || ||||||||||| || || Sbjct: 3051 atcaacatccttggcacattctccaccagcaaatccatatattccatgtagaaatacgcc 2992 Query: 372 gggtggttcagcggtggcggagggaggctcaccagcaccacagctgccat 421 ||||| |||| ||| || || ||||| || ||||| ||||| || ||||| Sbjct: 2991 gggtgattcaacggaggtggcgggagactaaccagaaccactgcggccat 2942
>gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC F26G16 sequence, complete sequence Length = 75799 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 312 atcaacatgcgtgggacgttctctacaagcatatccatgtactccatgtagaagtatgca 371 |||||||| | ||| || ||||| || |||| |||||| || ||||||||||| || || Sbjct: 19868 atcaacatccttggcacattctccaccagcaaatccatatattccatgtagaaatacgcc 19809 Query: 372 gggtggttcagcggtggcggagggaggctcaccagcaccacagctgccat 421 ||||| |||| ||| || || ||||| || ||||| ||||| || ||||| Sbjct: 19808 gggtgattcaacggaggtggcgggagactaaccagaaccactgcggccat 19759
>emb|AM113986.1| Arabidopsis thaliana mRNA for cation chloride cotransporter (ccc gene) Length = 3144 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 312 atcaacatgcgtgggacgttctctacaagcatatccatgtactccatgtagaagtatgca 371 |||||||| | ||| || ||||| || |||| |||||| || ||||||||||| || || Sbjct: 3052 atcaacatccttggcacattctccaccagcaaatccatatattccatgtagaaatacgcc 2993 Query: 372 gggtggttcagcggtggcggagggaggctcaccagcaccacagctgccat 421 ||||| |||| ||| || || ||||| || ||||| ||||| || ||||| Sbjct: 2992 gggtgattcaacggaggtggcgggagactaaccagaaccactgcggccat 2943
>gb|AC131989.8| Mus musculus chromosome 14, clone RP24-186N15, complete sequence Length = 180932 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 attcatctgatgtgtaaagaa 96 ||||||||||||||||||||| Sbjct: 123478 attcatctgatgtgtaaagaa 123458
>ref|XM_606422.2| PREDICTED: Bos taurus similar to Potassium voltage-gated channel subfamily E member 1 (IKs producing slow voltage-gated potassium channel beta subunit Mink) (Minimal potassium channel) (Delayed rectifier potassium channel subunit IsK) (LOC528014), mRNA Length = 650 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 cttcatctcggaaaggtatgcactg 575 ||||||||||| ||||||||||||| Sbjct: 378 cttcatctcgggaaggtatgcactg 354
>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence Length = 182677 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 tcaccagcaccacagctgcca 420 ||||||||||||||||||||| Sbjct: 158329 tcaccagcaccacagctgcca 158309
>gb|BC112873.1| Bos taurus cDNA clone MGC:137467 IMAGE:8175514, complete cds Length = 909 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 551 cttcatctcggaaaggtatgcactg 575 ||||||||||| ||||||||||||| Sbjct: 596 cttcatctcgggaaggtatgcactg 572
>gb|AC097659.3| Homo sapiens BAC clone RP11-408C24 from 4, complete sequence Length = 131944 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 532 cttctctttctgtggtttccttcat 556 ||||||| ||||||||||||||||| Sbjct: 129742 cttctctgtctgtggtttccttcat 129718
>dbj|AK032157.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430403M04 product:tubulin alpha 8, full insert sequence Length = 2164 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ttctctttctgtggtttcctt 553 ||||||||||||||||||||| Sbjct: 1567 ttctctttctgtggtttcctt 1547
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 ttctctttctgtggtttcctt 553 ||||||||||||||||||||| Sbjct: 57827 ttctctttctgtggtttcctt 57847
>ref|NM_105896.2| Arabidopsis thaliana P40; structural constituent of ribosome AT1G72370 (P40) transcript variant AT1G72370.1 mRNA, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 939 gcttcccatccaccatctgc 920
>ref|XM_519178.1| PREDICTED: Pan troglodytes similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC463509), mRNA Length = 1196 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 caccagcaccacagctgcca 420 |||||||||||||||||||| Sbjct: 807 caccagcaccacagctgcca 788
>emb|CR956426.6| Pig DNA sequence from clone CH242-42M23 on chromosome 17, complete sequence Length = 135274 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 aaatgtgacaacatctcttctatatccc 305 ||||||||||| ||||||||||| |||| Sbjct: 108430 aaatgtgacaaaatctcttctatttccc 108403
>gb|AC131751.2| Mus musculus BAC clone RP23-19P8 from 10, complete sequence Length = 185680 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atgtgtaaagaatgaagaca 104 |||||||||||||||||||| Sbjct: 60043 atgtgtaaagaatgaagaca 60062
>emb|AL590322.4| Human DNA sequence from clone RP11-536F2 on chromosome 9 Contains a CpG island, complete sequence Length = 120586 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 atgaagacactatattttgc 115 |||||||||||||||||||| Sbjct: 94327 atgaagacactatattttgc 94308
>emb|AL354893.14| Human DNA sequence from clone RP11-80I15 on chromosome 9 Contains an RPS26 (ribosomal protein S26) pseudogene, the 3' end of the FANCC gene for Fanconi anemia complementation group C, the 3' end of gene FLJ14675, a novel gene and a CpG island, complete sequence Length = 103980 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 531 ccttctctttctgtggtttccttcatct 558 |||| |||||||||| |||||||||||| Sbjct: 94883 ccttttctttctgtgctttccttcatct 94910
>emb|AL354869.11| Human DNA sequence from clone RP11-600P1 on chromosome 13 Contains a heat shock 60kDa protein 1 (chaperonin) (HSPD1) pseudogene, a novel gene and a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 197634 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gtatggagaacaggggtaca 56 |||||||||||||||||||| Sbjct: 103813 gtatggagaacaggggtaca 103794
>gb|BT000421.1| Arabidopsis thaliana putative 40S ribosomal protein SA (laminin receptor-like protein) (At1g72370) mRNA, complete cds Length = 1032 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 854 gcttcccatccaccatctgc 835
>emb|Y10379.1|ATRPP40 A.thaliana gene encoding ribosomal protein P40 Length = 3690 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 3246 gcttcccatccaccatctgc 3227
>emb|X89366.1|AT40KDAPR A.thaliana DNA for 40 kDa protein gene Length = 2049 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 1735 gcttcccatccaccatctgc 1716
>emb|X69056.1|ATLRH A.thaliana mRNA for laminin receptor homologue Length = 1073 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 859 gcttcccatccaccatctgc 840
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tgatgtgtaaagaatgaaga 102 |||||||||||||||||||| Sbjct: 127869 tgatgtgtaaagaatgaaga 127850
>gb|AY136324.1| Arabidopsis thaliana putative 40S ribosomal protein SA (laminin receptor-like protein) (At1g72370) mRNA, complete cds Length = 1103 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 916 gcttcccatccaccatctgc 897
>gb|AY114561.1| Arabidopsis thaliana putative 40S ribosomal protein SA (laminin receptor-like protein) (At1g72370) mRNA, complete cds Length = 1042 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 854 gcttcccatccaccatctgc 835
>gb|AC146785.12| Medicago truncatula clone mth2-4h4, complete sequence Length = 149005 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgacaacatctcttctatat 302 |||||||||||||||||||| Sbjct: 142039 tgacaacatctcttctatat 142058
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence Length = 99345 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tttgatcaagtaaaaaatgt 283 |||||||||||||||||||| Sbjct: 49443 tttgatcaagtaaaaaatgt 49462
>gb|AY079041.1| Arabidopsis thaliana At1g72370/T10D10_16 mRNA, complete cds Length = 897 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 854 gcttcccatccaccatctgc 835
>gb|AY065096.1| Arabidopsis thaliana putative 40S ribosomal protein SA (laminin receptor-like protein) (At1g72370; T10D10.16) mRNA, complete cds Length = 1151 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 936 gcttcccatccaccatctgc 917
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ttctaataaaactgtcagta 39 |||||||||||||||||||| Sbjct: 1550009 ttctaataaaactgtcagta 1550028
>gb|AY058885.1| Arabidopsis thaliana At1g72370/T10D10_16 mRNA, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 939 gcttcccatccaccatctgc 920
>gb|AY054211.1| Arabidopsis thaliana At1g72370/T10D10_16 mRNA, complete cds Length = 1168 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 919 gcttcccatccaccatctgc 900
>gb|AC153764.3| Loxodonta africana clone VMRC15-169D19, complete sequence Length = 147688 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 ctctttctgtggtttccttc 554 |||||||||||||||||||| Sbjct: 95679 ctctttctgtggtttccttc 95698
>emb|BX817196.1|CNS0AD2L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH91ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1125 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 925 gcttcccatccaccatctgc 906
>emb|BX816779.1|CNS0AD9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1096 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 923 gcttcccatccaccatctgc 904
>emb|BX815045.1|CNS0ACSY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS27ZF04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 541 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 295 gcttcccatccaccatctgc 276
>gb|M55071.1|BOVHLADRB2 Bovine MHC DR-beta pseudogene, exons n+1 and n+2 Length = 1164 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tttgtaatgaccaagtattc 79 |||||||||||||||||||| Sbjct: 912 tttgtaatgaccaagtattc 931
>emb|BX814998.1|CNS0AAO4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS23ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1126 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 909 gcttcccatccaccatctgc 890
>gb|AC016529.7|AC016529 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence Length = 87039 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 70038 gcttcccatccaccatctgc 70019
>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence Length = 203909 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atgtgtaaagaatgaagaca 104 |||||||||||||||||||| Sbjct: 6655 atgtgtaaagaatgaagaca 6636
>gb|AY087976.1| Arabidopsis thaliana clone 40091 mRNA, complete sequence Length = 1177 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 936 gcttcccatccaccatctgc 917
>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete sequence Length = 177886 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 461 tgtgtagaggaatttatcgaccttttgt 488 ||||||||||||||||| ||||||||| Sbjct: 44062 tgtgtagaggaatttataaaccttttgt 44035
>emb|CR962131.2| Medicago truncatula chromosome 5 clone mth2-69b10, COMPLETE SEQUENCE Length = 115407 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgacaacatctcttctatat 302 |||||||||||||||||||| Sbjct: 32497 tgacaacatctcttctatat 32516
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ttctaataaaactgtcagta 39 |||||||||||||||||||| Sbjct: 1367700 ttctaataaaactgtcagta 1367681
>emb|AL844865.6| Mouse DNA sequence from clone RP23-350L23 on chromosome 2, complete sequence Length = 197785 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 tacaaaatttgtaatgaccaagta 76 ||||||||||| |||||||||||| Sbjct: 87047 tacaaaatttgaaatgaccaagta 87070
>gb|U01955.1|ATU01955 Arabidopsis thaliana Columbia laminin receptor-like protein mRNA, complete cds Length = 1137 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttcccatccaccatctgc 524 |||||||||||||||||||| Sbjct: 908 gcttcccatccaccatctgc 889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,302,750 Number of Sequences: 3902068 Number of extensions: 5302750 Number of successful extensions: 124768 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124578 Number of HSP's gapped (non-prelim): 183 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)