ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62e13 |
|---|---|
| Clone Library Name | barley_pub |
>RL35_PLAFE (Q5DVH6) 60S ribosomal protein L35| Length = 122 Score = 32.3 bits (72), Expect = 0.50 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -3 Query: 160 NIRGNSREEDTKQKDDLKHPE---EVEDMTGGGNKKLCLSLMLCVINKNL 20 ++RG +EE KQ DDLK+ V +TGG KL +CV+ K++ Sbjct: 7 DLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKL---TKICVVRKSI 53
>CYSZ_SHIFL (Q83QN8) Protein cysZ| Length = 253 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 92 YFFW---VLQIILLFRIFFSTVASYIIP*DAPCNHLLA 196 Y W V+ ++L+F FFST+A++I AP N LLA Sbjct: 74 YLLWPLAVISVLLVFGYFFSTIANWIA---APFNGLLA 108
>CYSZ_ECOLI (P0A6J3) Protein cysZ| Length = 253 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 92 YFFW---VLQIILLFRIFFSTVASYIIP*DAPCNHLLA 196 Y W V+ ++L+F FFST+A++I AP N LLA Sbjct: 74 YLLWPLAVISVLLVFGYFFSTIANWIA---APFNGLLA 108
>CYSZ_ECOL6 (Q8FFB9) Protein cysZ| Length = 253 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 92 YFFW---VLQIILLFRIFFSTVASYIIP*DAPCNHLLA 196 Y W V+ ++L+F FFST+A++I AP N LLA Sbjct: 74 YLLWPLAVISVLLVFGYFFSTIANWIA---APFNGLLA 108
>CYSZ_ECO57 (P0A6J4) Protein cysZ| Length = 253 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 92 YFFW---VLQIILLFRIFFSTVASYIIP*DAPCNHLLA 196 Y W V+ ++L+F FFST+A++I AP N LLA Sbjct: 74 YLLWPLAVISVLLVFGYFFSTIANWIA---APFNGLLA 108
>ENV_SIVMK (P05884) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 881 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 329 GWRGAHHVLVGEEGILWWPCRRGG 400 GWR A L G G LW RRGG Sbjct: 839 GWRSATETLAGAWGDLWETLRRGG 862
>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 484 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 414 SAAGSPPLRQGHHRIPSSPTRTW*APLQPSPP 319 S+A SPP ++ HH S + PL PSPP Sbjct: 356 SSASSPPKKEHHHHHHHSESTKAPMPLLPSPP 387
>ENV_SIVML (P11267) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Coat protein GP32; Putative protein ENV-EXTN] Length = 880 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 329 GWRGAHHVLVGEEGILWWPCRRGG 400 GWR A L G G LW RRGG Sbjct: 838 GWRSATETLAGAWGDLWETLRRGG 861
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 6/30 (20%) Frame = +2 Query: 341 AHHVLVGEEGILW------WPCRRGGDPAA 412 A H E G LW WPC GGDP A Sbjct: 283 AEHPRGAERGSLWRFGDVPWPCPGGGDPEA 312
>YG58_YEAST (P53313) Hypothetical 86.6 kDa protein in PFK1-TDS4 intergenic| region Length = 767 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 163 DNIRGNSREEDTKQKDDLKHPEEVEDMTGGGNKKL 59 +N NS +ED D L+H +V TG KKL Sbjct: 272 ENFEENSEDEDGFDLDALRHKMQVNKKTGRRGKKL 306
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 28.5 bits (62), Expect = 7.2 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Frame = -3 Query: 247 GSSPRRTARDLQVPLQGCKEMIAW-------SISWDNIRGNSREEDTKQKDDLKHPEEVE 89 G R T R PL K M+ + ++ WD+ GN R+ + EE+ Sbjct: 1834 GEGGRMTGRGRTKPLTTVKNMLVYDPTTSTLNVRWDHAEGNPRQYKVFYRPTAGGAEEMT 1893 Query: 88 DMTGGGNKKLCLSL 47 + G N + SL Sbjct: 1894 TVPGNTNYVILRSL 1907
>SFSA_RHIME (O87322) Sugar fermentation stimulation protein homolog| Length = 239 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Frame = -3 Query: 283 QVPNITSLVSLRGSSPRRTARDLQVPLQGCKEMIAW----SISWDNIRGNSREEDTKQKD 116 QV N+ + +LR + + L ++ +A+ ++ + +RG + D+ + Sbjct: 96 QVGNLHTYGTLRREQRYGRNSRIDILLSDAEKGLAYVEVKNVHFSRVRGLAEFPDSPTQR 155 Query: 115 DLKHPEEVEDMTGGGNKKLCLSLM 44 KH EE+ DM G++ + L L+ Sbjct: 156 GAKHLEELGDMVEAGHRAIMLYLI 179
>MYC_CALJA (P49032) Myc proto-oncogene protein (c-Myc) (Transcription factor| p64) Length = 438 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 336 LQPSPPRLWSRRSQLWSYKCLI*PPLSPFADH 241 L P+PP SRRS L S C+ P SP D+ Sbjct: 55 LLPTPPLSPSRRSGLCSTSCVSVTPFSPRGDN 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,839,593 Number of Sequences: 219361 Number of extensions: 1140629 Number of successful extensions: 4250 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4247 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
