ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
2dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
3ref|NM_189370.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
4gb|BT016501.1| Zea mays clone Contig334 mRNA sequence 68 3e-08
5dbj|AK073846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6gb|BT019280.1| Zea mays clone Contig953.F mRNA sequence 60 6e-06
7gb|AY103548.1| Zea mays PCO091529 mRNA sequence 60 6e-06
8ref|XM_466144.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.37
9ref|XM_472497.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
10emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.37
11gb|AF520815.1| Danio rerio connexin 48.5 (cx48.5) gene, complete... 44 0.37
12ref|XM_703540.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.37
13ref|XM_703539.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.37
14ref|XM_703538.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.37
15ref|XM_703537.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.37
16ref|XM_681898.1| PREDICTED: Danio rerio similar to connexin 43, ... 44 0.37
17gb|BC049297.1| Danio rerio connexin 43, mRNA (cDNA clone MGC:552... 44 0.37
18gb|AY313942.1| Danio rerio connexin 43 gene, complete cds 44 0.37
19gb|AY340236.1| Danio rerio Cx32.2 and connexin 43 (gja1) genes, ... 44 0.37
20ref|NM_131038.1| Danio rerio connexin 43 (cx43), mRNA 44 0.37
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
23dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
24dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
25dbj|AK102190.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
26dbj|AK066564.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
27emb|CR352322.5| Zebrafish DNA sequence from clone DKEY-261A18 in... 44 0.37
28gb|AF035481.1|AF035481 Danio rerio connexin 43 (Cx43) mRNA, comp... 44 0.37
29dbj|AB054123.1| Oryza sativa (japonica cultivar-group) mRNA for ... 44 0.37
30gb|AY391436.1| Danio rerio mitogen-activated protein kinase 14 (... 42 1.5
31ref|XM_550337.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
32gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complet... 42 1.5
33gb|BC063937.1| Danio rerio mitogen-activated protein kinase 14b,... 42 1.5
34gb|BC063029.1| Danio rerio mitogen-activated protein kinase 14b,... 42 1.5
35emb|CR318593.15| Zebrafish DNA sequence from clone CH211-160O17 ... 42 1.5
36gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, com... 42 1.5
37emb|AL731553.12| Human DNA sequence from clone RP11-56M3 on chro... 42 1.5
38dbj|AK128407.1| Homo sapiens cDNA FLJ46550 fis, clone THYMU30386... 42 1.5
39dbj|AK094458.1| Homo sapiens cDNA FLJ37139 fis, clone BRACE20237... 42 1.5
40gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Can... 42 1.5
41ref|NM_070153.3| Caenorhabditis elegans Y67H2A.2 (Y67H2A.2) mRNA... 42 1.5
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
43gb|AY008286.1| Cyprinus carpio connexin 43 mRNA, complete cds 42 1.5
44dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
45emb|AL132951.3|CEY67H2A Caenorhabditis elegans YAC Y67H2A, compl... 42 1.5
46emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chr... 42 1.5
47dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.5
48ref|NM_124643.2| Arabidopsis thaliana structural constituent of ... 40 5.8
49gb|AY623115.1| Homo sapiens TAF4 RNA polymerase II, TATA box bin... 40 5.8
50gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosom... 40 5.8
51gb|AC132576.3| Mus musculus BAC clone RP24-444F2 from chromosome... 40 5.8
52ref|XM_538511.2| PREDICTED: Canis familiaris similar to Neutral ... 40 5.8
53emb|AL137077.31| Human DNA sequence from clone RP11-11M20 on chr... 40 5.8
54gb|AY122932.1| Arabidopsis thaliana unknown protein (At5g52650) ... 40 5.8
55gb|AY065217.1| Arabidopsis thaliana unknown protein (At5g52650) ... 40 5.8
56gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, comp... 40 5.8
57gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.8
58gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.8
59emb|BX830280.1|CNS0A19J Arabidopsis thaliana Full-length cDNA Co... 40 5.8
60emb|BX830062.1|CNS0A1D6 Arabidopsis thaliana Full-length cDNA Co... 40 5.8
61gb|AY088678.1| Arabidopsis thaliana clone 91769 mRNA, complete s... 40 5.8
62dbj|AB025606.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.8
63emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 i... 40 5.8 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 49/51 (96%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                   
Query: 202      gaagaggtacttgcagatctcg-ggcggttcttcttggagatgatccgcga 251
                |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 42419463 gaagaggtacttgcagatctcgcggcggttcttcttggagatgatctgcga 42419513
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 49/51 (96%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                
Query: 202   gaagaggtacttgcagatctcg-ggcggttcttcttggagatgatccgcga 251
             |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 78801 gaagaggtacttgcagatctcgcggcggttcttcttggagatgatctgcga 78851
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>ref|NM_189370.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 540

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 45/46 (97%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctcg-ggcggttcttcttggagatgatc 246
           |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 48  gaagaggtacttgcagatctcgcggcggttcttcttggagatgatc 3
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>gb|BT016501.1| Zea mays clone Contig334 mRNA sequence
          Length = 841

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 44/46 (95%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctcg-ggcggttcttcttggagatgatc 246
           ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 111 gaagatgtacttgcagatctcgcggcggttcttcttggagatgatc 66
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>dbj|AK073846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070I05, full
           insert sequence
          Length = 900

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 44/46 (95%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctcg-ggcggttcttcttggagatgatc 246
           |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 136 gaagaggtacttgcagatctcgcggcggttcttcttgcagatgatc 91
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>gb|BT019280.1| Zea mays clone Contig953.F mRNA sequence
          Length = 872

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 198 ccttgaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||||||   |||||||||||||| |||||||
Sbjct: 741 ccttgaagaggtacttgcagatctcattgcggttcttcttggggatgatc 790
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>gb|AY103548.1| Zea mays PCO091529 mRNA sequence
          Length = 1541

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 198 ccttgaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||||||   |||||||||||||| |||||||
Sbjct: 298 ccttgaagaggtacttgcagatctcattgcggttcttcttggggatgatc 249
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>ref|XM_466144.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 853

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||    ||||||||||||| |||||||
Sbjct: 128 gaagaggtacttgcagatctcattccggttcttcttggggatgatc 83
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>ref|XM_472497.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 552

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||   |||||||||||| | |||||||
Sbjct: 48  gaagaggtacttgcagatctcattgcggttcttcttcgggatgatc 3
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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
              complete sequence
          Length = 163738

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                            
Query: 202    gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
              |||||||||||||||||||||   |||||||||||| | |||||||
Sbjct: 151710 gaagaggtacttgcagatctcattgcggttcttcttcgggatgatc 151665
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>gb|AF520815.1| Danio rerio connexin 48.5 (cx48.5) gene, complete cds
          Length = 1430

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 268 cttctgggtgcttcagatcatc 289
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>ref|XM_703540.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 5
           (LOC564569), mRNA
          Length = 2807

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 290 cttctgggtgcttcagatcatc 311
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>ref|XM_703539.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 4
           (LOC564569), mRNA
          Length = 2763

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 327 cttctgggtgcttcagatcatc 348
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>ref|XM_703538.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 3
           (LOC564569), mRNA
          Length = 2790

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 327 cttctgggtgcttcagatcatc 348
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>ref|XM_703537.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 2
           (LOC564569), mRNA
          Length = 2658

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 228 cttctgggtgcttcagatcatc 249
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>ref|XM_681898.1| PREDICTED: Danio rerio similar to connexin 43, transcript variant 1
           (LOC564569), mRNA
          Length = 2875

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 358 cttctgggtgcttcagatcatc 379
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>gb|BC049297.1| Danio rerio connexin 43, mRNA (cDNA clone MGC:55225 IMAGE:5915503),
           complete cds
          Length = 2821

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 298 cttctgggtgcttcagatcatc 319
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>gb|AY313942.1| Danio rerio connexin 43 gene, complete cds
          Length = 6771

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 97   cttctgggtgcttcagatcatc 118
            ||||||||||||||||||||||
Sbjct: 5495 cttctgggtgcttcagatcatc 5516
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>gb|AY340236.1| Danio rerio Cx32.2 and connexin 43 (gja1) genes, complete cds
          Length = 12964

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 97   cttctgggtgcttcagatcatc 118
            ||||||||||||||||||||||
Sbjct: 9864 cttctgggtgcttcagatcatc 9885
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>ref|NM_131038.1| Danio rerio connexin 43 (cx43), mRNA
          Length = 2873

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 347 cttctgggtgcttcagatcatc 368
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                              
Query: 202      gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
                |||||||||||||||||||||   |||||||||||| | |||||||
Sbjct: 21338236 gaagaggtacttgcagatctcattgcggttcttcttcgggatgatc 21338191
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                              
Query: 202      gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
                |||||||||||||||||||||    ||||||||||||| |||||||
Sbjct: 20669194 gaagaggtacttgcagatctcattccggttcttcttggggatgatc 20669149
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>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0451A10
          Length = 137046

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                           
Query: 202   gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
             |||||||||||||||||||||    ||||||||||||| |||||||
Sbjct: 20300 gaagaggtacttgcagatctcattccggttcttcttggggatgatc 20255
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>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0040I22
          Length = 134273

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                           
Query: 202   gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
             |||||||||||||||||||||    ||||||||||||| |||||||
Sbjct: 66049 gaagaggtacttgcagatctcattccggttcttcttggggatgatc 66004
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>dbj|AK102190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087A06, full
           insert sequence
          Length = 902

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||   |||||||||||| | |||||||
Sbjct: 141 gaagaggtacttgcagatctcattgcggttcttcttcgggatgatc 96
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>dbj|AK066564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I17, full
           insert sequence
          Length = 853

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||    ||||||||||||| |||||||
Sbjct: 128 gaagaggtacttgcagatctcattccggttcttcttggggatgatc 83
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>emb|CR352322.5| Zebrafish DNA sequence from clone DKEY-261A18 in linkage group 20,
             complete sequence
          Length = 59134

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    cttctgggtgcttcagatcatc 118
             ||||||||||||||||||||||
Sbjct: 41273 cttctgggtgcttcagatcatc 41294
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>gb|AF035481.1|AF035481 Danio rerio connexin 43 (Cx43) mRNA, complete cds
          Length = 2873

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  cttctgggtgcttcagatcatc 118
           ||||||||||||||||||||||
Sbjct: 347 cttctgggtgcttcagatcatc 368
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>dbj|AB054123.1| Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein
           S10, complete cds
          Length = 756

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 202 gaagaggtacttgcagatctc-gggcggttcttcttggagatgatc 246
           |||||||||||||||||||||   |||||||||||| | |||||||
Sbjct: 139 gaagaggtacttgcagatctcattgcggttcttcttcgggatgatc 94
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>gb|AY391436.1| Danio rerio mitogen-activated protein kinase 14 (MAPK14) mRNA,
            complete cds
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 283  gtacgaccagagctgcgagcgccgagacc 311
            |||||||||||||| |||| |||||||||
Sbjct: 1133 gtacgaccagagcttcgagagccgagacc 1161
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>ref|XM_550337.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 cttcttggagatgatccgcga 251
           |||||||||||||||||||||
Sbjct: 456 cttcttggagatgatccgcga 476
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>gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complete sequence
          Length = 193518

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 40    ataacatcaatgataaacaaagctt 64
             ||||||| |||||||||||||||||
Sbjct: 18354 ataacataaatgataaacaaagctt 18330
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>gb|BC063937.1| Danio rerio mitogen-activated protein kinase 14b, mRNA (cDNA clone
            MGC:77585 IMAGE:6996740), complete cds
          Length = 4180

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 283  gtacgaccagagctgcgagcgccgagacc 311
            |||||||||||||| |||| |||||||||
Sbjct: 1163 gtacgaccagagcttcgagagccgagacc 1191
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>gb|BC063029.1| Danio rerio mitogen-activated protein kinase 14b, mRNA (cDNA clone
            MGC:65760 IMAGE:6792413), complete cds
          Length = 4245

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 283  gtacgaccagagctgcgagcgccgagacc 311
            |||||||||||||| |||| |||||||||
Sbjct: 1185 gtacgaccagagcttcgagagccgagacc 1213
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>emb|CR318593.15| Zebrafish DNA sequence from clone CH211-160O17 in linkage group 11,
             complete sequence
          Length = 166807

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 283   gtacgaccagagctgcgagcgccgagacc 311
             |||||||||||||| |||| |||||||||
Sbjct: 25514 gtacgaccagagcttcgagagccgagacc 25486
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>gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, complete sequence
          Length = 203765

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 337    gggtgctcaccatgtccttgt 357
              |||||||||||||||||||||
Sbjct: 105739 gggtgctcaccatgtccttgt 105759
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>emb|AL731553.12| Human DNA sequence from clone RP11-56M3 on chromosome 10 Contains a
             nudix (nucleoside diphosphate linked moiety X)-type
             pseudogene, complete sequence
          Length = 99089

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tcttctctactgttgcctctt 155
             |||||||||||||||||||||
Sbjct: 96949 tcttctctactgttgcctctt 96929
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>dbj|AK128407.1| Homo sapiens cDNA FLJ46550 fis, clone THYMU3038603, moderately
            similar to Mus musculus WW domain binding protein 2
            (Wbp2)
          Length = 3717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gggtgctcaccatgtccttgt 357
            |||||||||||||||||||||
Sbjct: 1933 gggtgctcaccatgtccttgt 1953
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>dbj|AK094458.1| Homo sapiens cDNA FLJ37139 fis, clone BRACE2023727, weakly similar
           to Human WW domain binding protein-2 mRNA
          Length = 2069

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 gggtgctcaccatgtccttgt 357
           |||||||||||||||||||||
Sbjct: 241 gggtgctcaccatgtccttgt 261
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>gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75385

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    agtttttgttgatcacacata 42
             |||||||||||||||||||||
Sbjct: 50987 agtttttgttgatcacacata 50967
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>ref|NM_070153.3| Caenorhabditis elegans Y67H2A.2 (Y67H2A.2) mRNA, complete cds
          Length = 1646

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 117 tccttttgtttcgtatcttct 137
           |||||||||||||||||||||
Sbjct: 310 tccttttgtttcgtatcttct 290
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 231     cttcttggagatgatccgcga 251
               |||||||||||||||||||||
Sbjct: 3117374 cttcttggagatgatccgcga 3117354
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>gb|AY008286.1| Cyprinus carpio connexin 43 mRNA, complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  ttctgggtgcttcagatcatc 118
           |||||||||||||||||||||
Sbjct: 229 ttctgggtgcttcagatcatc 249
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   cttcttggagatgatccgcga 251
             |||||||||||||||||||||
Sbjct: 71559 cttcttggagatgatccgcga 71539
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>emb|AL132951.3|CEY67H2A Caenorhabditis elegans YAC Y67H2A, complete sequence
          Length = 57745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   tccttttgtttcgtatcttct 137
             |||||||||||||||||||||
Sbjct: 32021 tccttttgtttcgtatcttct 32041
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>emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chromosome 4, complete
             sequence
          Length = 176652

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    cctcctcctgtcatgtcctct 92
             |||||||||||||||||||||
Sbjct: 72791 cctcctcctgtcatgtcctct 72811
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>dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT45G21, TM0151,
             complete sequence
          Length = 109264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 44    catcaatgataaacaaagcttcttg 68
             |||||| ||||||||||||||||||
Sbjct: 41221 catcaaagataaacaaagcttcttg 41245
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>ref|NM_124643.2| Arabidopsis thaliana structural constituent of ribosome AT5G52650
           mRNA, complete cds
          Length = 778

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 122 ttgaagaggtacttgcagat 103
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>gb|AY623115.1| Homo sapiens TAF4 RNA polymerase II, TATA box binding protein
             (TBP)-associated factor, 135kDa (TAF4) gene, complete cds
          Length = 94949

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     ctacacataaaagttcaagttttt 28
             |||||||||||| |||||||||||
Sbjct: 23591 ctacacataaaacttcaagttttt 23568
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>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete
             sequence
          Length = 197765

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aaagttcaagtttttgttga 33
             ||||||||||||||||||||
Sbjct: 52067 aaagttcaagtttttgttga 52048
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>gb|AC132576.3| Mus musculus BAC clone RP24-444F2 from chromosome 16, complete sequence
          Length = 135862

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   cagagagtagatgatgcaac 430
             ||||||||||||||||||||
Sbjct: 42860 cagagagtagatgatgcaac 42841
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>ref|XM_538511.2| PREDICTED: Canis familiaris similar to Neutral amino acid transporter
            A (SATT) (Alanine/serine/cysteine/ threonine transporter)
            (ASCT1) (LOC481391), mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  gctggaggggtgctcaccat 349
            ||||||||||||||||||||
Sbjct: 1264 gctggaggggtgctcaccat 1283
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>emb|AL137077.31| Human DNA sequence from clone RP11-11M20 on chromosome 20 Contains the
             5' end of the TAF4 gene for TAF4 RNA polymerase II (TATA
             box binding protein (TBP)-associated factor, 135 kDa), an
             RPL17 (ribosomal protein L17) pseudogene, the C20orf40
             gene for a novel protein similar to Pleurodeles waltlii
             RAP55 protein and two CpG islands, complete sequence
          Length = 126712

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     ctacacataaaagttcaagttttt 28
             |||||||||||| |||||||||||
Sbjct: 36130 ctacacataaaacttcaagttttt 36153
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>gb|AY122932.1| Arabidopsis thaliana unknown protein (At5g52650) mRNA, complete cds
          Length = 571

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 50  ttgaagaggtacttgcagat 31
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>gb|AY065217.1| Arabidopsis thaliana unknown protein (At5g52650) mRNA, complete cds
          Length = 778

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 115 ttgaagaggtacttgcagat 96
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>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence
          Length = 117180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   gctggaggggtgctcaccat 349
             ||||||||||||||||||||
Sbjct: 33740 gctggaggggtgctcaccat 33721
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 300     agcgccgagaccagagccgaggcg 323
               ||||||||||||||| ||||||||
Sbjct: 1146776 agcgccgagaccagaaccgaggcg 1146753
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     atggtggccttgtcggagag 395
               ||||||||||||||||||||
Sbjct: 1763934 atggtggccttgtcggagag 1763915
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>emb|BX830280.1|CNS0A19J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB70ZC05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 752

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 98  ttgaagaggtacttgcagat 79
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>emb|BX830062.1|CNS0A1D6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB57ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 750

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 96  ttgaagaggtacttgcagat 77
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>gb|AY088678.1| Arabidopsis thaliana clone 91769 mRNA, complete sequence
          Length = 768

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ttgaagaggtacttgcagat 219
           ||||||||||||||||||||
Sbjct: 124 ttgaagaggtacttgcagat 105
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>dbj|AB025606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6N7
          Length = 74282

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ttgaagaggtacttgcagat 219
             ||||||||||||||||||||
Sbjct: 36178 ttgaagaggtacttgcagat 36197
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>emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 in linkage group 4,
             complete sequence
          Length = 157921

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aggttatattaggcacttgt 284
             ||||||||||||||||||||
Sbjct: 70612 aggttatattaggcacttgt 70593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,096,208
Number of Sequences: 3902068
Number of extensions: 4096208
Number of successful extensions: 76253
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76046
Number of HSP's gapped (non-prelim): 190
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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