ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62e10 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 105 bits (261), Expect = 4e-23 Identities = 49/63 (77%), Positives = 57/63 (90%) Frame = -1 Query: 346 NKVAGKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIP 167 NKVAGKVFRIGHLG++NELQLLGCL GV+M+LKD+GYPV +GSGVAAA+ YL + PLIP Sbjct: 339 NKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIP 398 Query: 166 SRI 158 SRI Sbjct: 399 SRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 65.5 bits (158), Expect = 3e-11 Identities = 33/52 (63%), Positives = 40/52 (76%) Frame = -1 Query: 346 NKVAGKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYPVKLGSGVAAAAAYL 191 ++VAGKVFRIGH+G LNEL LLG + G +M L D G V GSGVAAA++YL Sbjct: 320 SQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 65.1 bits (157), Expect = 4e-11 Identities = 33/55 (60%), Positives = 39/55 (70%) Frame = -1 Query: 346 NKVAGKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYPVKLGSGVAAAAAYLSNS 182 NKVAGKVFRIGHLG L+E+ + G L +M LKD G +KLGSG AAA Y S + Sbjct: 334 NKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 47.8 bits (112), Expect = 7e-06 Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Frame = -1 Query: 340 VAGKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYP-VKLGSGVAAAAAYLSN 185 ++ K+FR+GHLG +++ +L C+ +++VL ++G+ G+GVAAAA SN Sbjct: 331 LSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 44.3 bits (103), Expect = 8e-05 Identities = 23/50 (46%), Positives = 33/50 (66%) Frame = -1 Query: 340 VAGKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYPVKLGSGVAAAAAYL 191 +AGK+FRIGH+G E ++L L V++ LK++G+ VK SGV A L Sbjct: 334 LAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = -1 Query: 334 GKVFRIGHLGHLNELQLLGCLGGVKMVLKDIGYP-VKLGSGVAAAAAYLSNS 182 G++FRIGHLG + + +L + ++ VL ++GY G+GVAAA+ LS + Sbjct: 333 GQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVLSTA 384
>GATA_MYCTU (O53258) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 31.2 bits (69), Expect = 0.66 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 204 AAATPLPS-FTGYPMSLSTIFTPPRQPRSCSSLRWPRW--PILKTLPATL 344 AA PLPS G P++L +FT P +C S W P TL A L Sbjct: 64 AAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRSPYDATLTARL 113
>GATA_MYCBO (Q7TXG2) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 494 Score = 31.2 bits (69), Expect = 0.66 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 204 AAATPLPS-FTGYPMSLSTIFTPPRQPRSCSSLRWPRW--PILKTLPATL 344 AA PLPS G P++L +FT P +C S W P TL A L Sbjct: 64 AAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRSPYDATLTARL 113
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 31.2 bits (69), Expect = 0.66 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 Query: 162 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTIFTPPRQPRSCSSLRWPRWPIL 323 L G + ER A LP+ T Y + T P QPR +W RW ++ Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRVM 137
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +3 Query: 186 FERYAAAAATPLPSFTGYPMSLSTIFTPPRQPRSCSSLRWPRWPILKTLP 335 F R A+ + +G PM+ S PP P + S P WP + P Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWPTAASPP 130
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 208 PPRRCQASPGTRCP*APSSPRRGNPE 285 PPR Q PG P SSPRRG P+ Sbjct: 756 PPRSLQPPPGRPDPELSSSPRRGPPK 781
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +1 Query: 184 NSRGTPPRPPRRCQAS-PGTRCP*APSSPRRG 276 N+R PP PP R G R P P PRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 Query: 184 NSRGTPPRPPRRCQASPGTRCP*APSSPRRGNP 282 ++RGTPP P R P P P+ PR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homolog (EC| 2.7.11.1) Length = 1230 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 181 WNSRGTPPRPPRRCQASPGTRCP*APSSPRRGNP 282 W++ TPP P + G+ APSSP R P Sbjct: 557 WSNENTPPATPGGSNSGSGSGGGGAPSSPHRTPP 590
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 162 LEGMRGVEFERYAAAAATPLPSFTGYPMS-----LSTIFTPPRQPRSCSSLRWPRWPILK 326 LEG+RG++F+ ++P P P S ++ F P P++ S PR P Sbjct: 732 LEGLRGLDFDPLTFRCSSPTPGDPAPPASPAPPAPASAFPPRVTPQAIS----PRGPTSP 787 Query: 327 TLPATL 344 PA L Sbjct: 788 ASPAAL 793
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 190 RGTPPRPPRRCQASPGT 240 R PP PRRC+A+P T Sbjct: 147 RAVPPAAPRRCEAAPAT 163
>RGAP1_HUMAN (Q9H0H5) Rac GTPase-activating protein 1 (MgcRacGAP)| Length = 632 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/27 (48%), Positives = 20/27 (74%) Frame = -1 Query: 244 IGYPVKLGSGVAAAAAYLSNSTPLIPS 164 IG PVK+G G+ A ++S ++P+IPS Sbjct: 340 IGTPVKIGEGM--LADFVSQTSPMIPS 364
>FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor| Length = 94 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = +1 Query: 37 NTTPALLCSAVCPAADPSRAHCTCLFFSSRPPCFCAWN 150 N+ + + CPA + C F S PPC C N Sbjct: 54 NSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDIN 91
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = +2 Query: 101 VRVCSSPRDPLAFVRGICSDSXXXXXXXXXXXXXXXXHAAAKLHRVPDVLEHHLHPA 271 +R S DPL+ VR IC +L R+ D L HH PA Sbjct: 586 LRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQPA 642
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = +2 Query: 101 VRVCSSPRDPLAFVRGICSDSXXXXXXXXXXXXXXXXHAAAKLHRVPDVLEHHLHPA 271 +R S DPL+ VR IC +L R+ D L HH PA Sbjct: 586 LRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQPA 642
>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC| 2.7.11.25) Length = 1011 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Frame = +1 Query: 199 PPRPPRRCQASPGT---RCP*APSSPRRGNPE 285 PP PP+RC + GT R P P++ +PE Sbjct: 678 PPSPPKRCLSYGGTSQLRVPEEPAAEEPASPE 709
>PGLR1_ASPAC (O74213) Polygalacturonase 1 precursor (EC 3.2.1.15) (PG-1)| (Pectinase 1) Length = 378 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Frame = -3 Query: 257 GAQGHRVPGEA---WQRRGGRGG-VPLEFHAPHPLQN 159 GA GH + G+ W GG GG +F A H L N Sbjct: 117 GASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTN 153
>NOV_HUMAN (P48745) Protein NOV homolog precursor (NovH) (Nephroblastoma| overexpressed gene protein homolog) Length = 357 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/45 (40%), Positives = 20/45 (44%) Frame = +1 Query: 115 FSSRPPCFCAWNLLRFWRG*GAWNSRGTPPRPPRRCQASPGTRCP 249 F R C C LL G A R PP+ P RC A+P T P Sbjct: 9 FCLRKQCLCLTFLLLHLLGQVAATQR-CPPQCPGRCPATPPTCAP 52
>TYPH_LEGPN (Q8RNP4) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 517 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 287 TSGLPRRGEDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQG 129 TS L + GE G + AW+ + G ++ P PL++LS HA+ G Sbjct: 74 TSELLQPGEAGLSDY-----AWESLHAKEGDEIQVSHPKPLESLSYVHAKIYG 121
>TYPH_LEGPH (Q5ZWR3) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 517 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 287 TSGLPRRGEDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQG 129 TS L + GE G + AW+ + G ++ P PL++LS HA+ G Sbjct: 74 TSELLQPGEAGLSDY-----AWESLHAKEGDEIQVSHPKPLESLSYVHAKIYG 121
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +1 Query: 196 TPPRPPRRCQASPGTRCP*APSSPRRGNP 282 TPP P PG P AP +P G P Sbjct: 302 TPPPAPPAAPGGPGAPAPGAPGAPAPGAP 330
>CWC25_ASHGO (Q75AR4) Pre-mRNA-splicing factor CWC25| Length = 138 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = -3 Query: 260 DGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNKH 105 D +G P E RGG+ G P+E A P +K A+ +GG H Sbjct: 89 DAPEGTCSPDETAAARGGQQGAPVEVSAKSP----AKAVAEARGGPGSSGVH 136
>BCLF1_HUMAN (Q9NYF8) Bcl-2-associated transcription factor 1 (Btf)| Length = 920 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = +3 Query: 183 EFERYAAAAATPLPSFTGY------PMSLSTIFTPPRQPRSCSSLRWPRWPILKTL 332 EF + +A + P + Y P S S I TPP Q SCS P+L T+ Sbjct: 201 EFNKSSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDA-----PMLSTV 251
>VP48_NPVAC (Q00732) p48 protein (p45 protein)| Length = 387 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +1 Query: 19 YIQREYNTTP-----ALLCSAVCPAADPSRAHCTCLFFSS 123 Y+Q+ YN TP A++C + PA C C + +S Sbjct: 109 YLQKYYNPTPAPDVDAIMCQSCKPANKIQCFECKCKYLAS 148
>VL2_HPV44 (Q80918) Minor capsid protein L2| Length = 460 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +3 Query: 210 ATPLPSFTGYPMSLSTIFTPPRQPRSCSSLRWPRWPILKTLPATL 344 A P P T P+SLS + P Q S S+ W + +LPA + Sbjct: 353 AEPDPDVTEEPVSLSFSTSTPFQRSSVSATPWGNTTVPLSLPADM 397
>THS_METKA (P50016) Thermosome subunit (Chaperonin-like complex) (CLIC)| Length = 545 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 9/47 (19%) Frame = +2 Query: 215 AAAKLHRVPDVLEHHLHPA-------EATQKLQ--LVEVAEVADPED 328 A LH+ D+L+ +HP A +K + L E+AE DP+D Sbjct: 106 AGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEIDPDD 152
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +1 Query: 181 WNSRGTPPRPPRR-CQASPGT 240 W S PPR PR+ C+ +PGT Sbjct: 1577 WQSTPQPPRGPRKTCRGAPGT 1597 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,660,537 Number of Sequences: 219361 Number of extensions: 1046456 Number of successful extensions: 4082 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4074 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
