ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61p04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4 32 1.1
2NARB_SYNY3 (P73448) Nitrate reductase (EC 1.7.99.4) 31 1.9
3NAPA_YERPS (Q668I0) Periplasmic nitrate reductase precursor (EC ... 31 1.9
4NAPA_YERPE (Q8ZCF3) Periplasmic nitrate reductase precursor (EC ... 31 1.9
5YKC3_YEAST (P36103) Hypothetical 32.3 kDa protein in URA6-CDC16 ... 30 4.3
6NAPA_SHISS (Q3Z001) Periplasmic nitrate reductase precursor (EC ... 30 4.3
7NAPA_SHIFL (Q83QV0) Periplasmic nitrate reductase precursor (EC ... 30 4.3
8NAPA_SHIDS (Q32I06) Periplasmic nitrate reductase precursor (EC ... 30 4.3
9NAPA_SHIBS (Q31Z29) Periplasmic nitrate reductase precursor (EC ... 30 4.3
10NAPA_SALTY (Q8ZNH6) Periplasmic nitrate reductase precursor (EC ... 30 4.3
11NAPA_SALTI (Q8Z570) Periplasmic nitrate reductase precursor (EC ... 30 4.3
12NAPA_SALPA (Q5PI61) Periplasmic nitrate reductase precursor (EC ... 30 4.3
13NAPA_SALCH (Q57M92) Periplasmic nitrate reductase precursor (EC ... 30 4.3
14NAPA_ECOLI (P33937) Periplasmic nitrate reductase precursor (EC ... 30 4.3
15NAPA_ECOL6 (Q8CVW4) Periplasmic nitrate reductase precursor (EC ... 30 4.3
16NAPA_ECO57 (Q8XE47) Periplasmic nitrate reductase precursor (EC ... 30 4.3
17NAPA_PASMU (Q9CKL8) Periplasmic nitrate reductase precursor (EC ... 30 5.6
18NASA_KLEOX (Q06457) Nitrate reductase (EC 1.7.99.4) 29 7.3
19NAPA_MANSM (Q65Q72) Periplasmic nitrate reductase precursor (EC ... 29 7.3
20NAPA_ERWCT (Q6D5Z2) Periplasmic nitrate reductase precursor (EC ... 29 7.3
21IWS1A_XENLA (Q6DE96) IWS1-like protein A 29 9.5

>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 515 VPAFGDWDMKNGAMPD-YSMDFSKIREMR 432
           VP FGDWD  N +  D Y+  F+K+RE R
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREER 176



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>NARB_SYNY3 (P73448) Nitrate reductase (EC 1.7.99.4)|
          Length = 714

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 238 LRNLFLPVGESSRPWSGPWSLAGAPSLVG 324
           L NL L  G+  +P SGP+SL G P+ +G
Sbjct: 322 LINLHLLTGQIGKPGSGPFSLTGQPNAMG 350



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>NAPA_YERPS (Q668I0) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 830

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S P SGP+SL G PS  G
Sbjct: 389 NLHLLTGKISTPGSGPFSLTGQPSACG 415



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>NAPA_YERPE (Q8ZCF3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 830

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S P SGP+SL G PS  G
Sbjct: 389 NLHLLTGKISTPGSGPFSLTGQPSACG 415



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>YKC3_YEAST (P36103) Hypothetical 32.3 kDa protein in URA6-CDC16 intergenic|
           region
          Length = 277

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 485 NGAMPDYSMDFSKIREMRKQNKKELS 408
           NGA P  ++D SK  E R++N KELS
Sbjct: 130 NGASPSPNLDRSKKNEKRRKNAKELS 155



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>NAPA_SHISS (Q3Z001) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SHIFL (Q83QV0) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SHIDS (Q32I06) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SHIBS (Q31Z29) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SALTY (Q8ZNH6) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SALTI (Q8Z570) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SALPA (Q5PI61) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_SALCH (Q57M92) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_ECOLI (P33937) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_ECOL6 (Q8CVW4) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_ECO57 (Q8XE47) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           NL L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415



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>NAPA_PASMU (Q9CKL8) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           N+ L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NIHLLTGKISKPGCGPFSLTGQPSACG 415



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>NASA_KLEOX (Q06457) Nitrate reductase (EC 1.7.99.4)|
          Length = 866

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVGWGALDG 342
           N+ L  G+  RP  GP+SL G P+ +G   + G
Sbjct: 301 NVHLACGKYGRPGCGPFSLTGQPNAMGGREVGG 333



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>NAPA_MANSM (Q65Q72) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 830

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           N+ L  G+ S+P  GP+SL G PS  G
Sbjct: 391 NVHLLTGKISKPGCGPFSLTGQPSACG 417



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>NAPA_ERWCT (Q6D5Z2) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 NLFLPVGESSRPWSGPWSLAGAPSLVG 324
           N+ L  G+ S+P  GP+SL G PS  G
Sbjct: 389 NIHLLTGKISQPGCGPFSLTGQPSACG 415



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>IWS1A_XENLA (Q6DE96) IWS1-like protein A|
          Length = 836

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 500 DWDMKNGAMPDYSMDFSKIREMRKQNKKELSRASLGG 390
           D DMK+G M DY  DF  + E +K    +  R   GG
Sbjct: 531 DDDMKSGKMGDYKSDFDLMLERKKSMSGKQRRNRDGG 567


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,659,487
Number of Sequences: 219361
Number of extensions: 937355
Number of successful extensions: 2838
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2836
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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