Clone Name | rbah61p04 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016998.1| Zea mays clone EK07D2309C06.c mRNA sequence Length = 679 Score = 278 bits (140), Expect = 2e-71 Identities = 152/156 (97%) Strand = Plus / Minus Query: 369 gtgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctg 206 Query: 429 cttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttctt 488 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 205 cttgcgcatctcgcggatcttggagaagtccatggagtagtccggcagcgcgccgttctt 146 Query: 489 catgtcccagtccccgaacgccggcaccgtcatcca 524 | |||||||||||||||||||||||||||||||||| Sbjct: 145 cgtgtcccagtccccgaacgccggcaccgtcatcca 110 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcc 253 |||||||||||||||||| ||| |||| |||||||||||| |||||| Sbjct: 397 tcttcaggccttgatacaacaccggaagtagctcaggaacttcttcc 351
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 278 bits (140), Expect = 2e-71 Identities = 152/156 (97%) Strand = Plus / Minus Query: 369 gtgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctg 428 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 82277 gtgggcgaggaggtcgtcgtcgccgccgatgctggcgcgggagagctccttcttgttctg 82218 Query: 429 cttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttctt 488 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 82217 cttgcgcatctcgcggatcttggagaagtccatggagtagtccggcagcgcgccgttctt 82158 Query: 489 catgtcccagtccccgaacgccggcaccgtcatcca 524 |||||||||||||||||||||||||||||||||||| Sbjct: 82157 catgtcccagtccccgaacgccggcaccgtcatcca 82122 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcc 253 |||||||||||||||||| |||||||| |||||||||||| |||||| Sbjct: 83928 tcttcaggccttgatacaacactggaagtagctcaggaacttcttcc 83882
>gb|AY103831.1| Zea mays PCO108346 mRNA sequence Length = 1159 Score = 278 bits (140), Expect = 2e-71 Identities = 152/156 (97%) Strand = Plus / Minus Query: 369 gtgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 gtgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctg 586 Query: 429 cttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttctt 488 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 585 cttgcgcatctcgcggatcttggagaagtccatggagtagtccggcagcgcgccgttctt 526 Query: 489 catgtcccagtccccgaacgccggcaccgtcatcca 524 | |||||||||||||||||||||||||||||||||| Sbjct: 525 cgtgtcccagtccccgaacgccggcaccgtcatcca 490 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttccggtgggcga 266 ||||||||||||||||||||||||||| |||||||||||| |||||| ||| || || || Sbjct: 807 tcttcaggccttgatacagcactggaagtagctcaggaacttcttccctcccgttgggga 748 Query: 267 gtcgtcgcggccgtggagcgg 287 || ||||||| |||||||||| Sbjct: 747 gtggtcgcgggcgtggagcgg 727
>ref|XM_470302.1| Oryza sativa (japonica cultivar-group), mRNA Length = 342 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Minus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 209 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 150 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 149 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 90 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 89 atgtcccagtccccgaacgccggcaccgtcatccac 54
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Plus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3731756 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 3731815 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 3731816 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 3731875 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 3731876 atgtcccagtccccgaacgccggcaccgtcatccac 3731911 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttcc 257 |||||||||||| |||||||||||||| |||||||| ||| || ||||||| Sbjct: 3729851 tcttcaggccttaatacagcactggaagtagctcagaaacgtcctccttcc 3729901
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Minus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 49621 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 49562 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 49561 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 49502 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 49501 atgtcccagtccccgaacgccggcaccgtcatccac 49466 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttcc 257 |||||||||||| |||||||||||||| |||||||| ||| || ||||||| Sbjct: 51526 tcttcaggccttaatacagcactggaagtagctcagaaacgtcctccttcc 51476
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Plus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 10380 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 10439 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 10440 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 10499 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 10500 atgtcccagtccccgaacgccggcaccgtcatccac 10535 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttcc 257 |||||||||||| |||||||||||||| |||||||| ||| || ||||||| Sbjct: 8475 tcttcaggccttaatacagcactggaagtagctcagaaacgtcctccttcc 8525
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Plus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3731867 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 3731926 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 3731927 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 3731986 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 3731987 atgtcccagtccccgaacgccggcaccgtcatccac 3732022 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttcc 257 |||||||||||| |||||||||||||| |||||||| ||| || ||||||| Sbjct: 3729962 tcttcaggccttaatacagcactggaagtagctcagaaacgtcctccttcc 3730012
>dbj|AK063222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E07, full insert sequence Length = 601 Score = 262 bits (132), Expect = 1e-66 Identities = 150/156 (96%) Strand = Plus / Minus Query: 370 tgggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgc 429 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 197 tgggcgaggaggtcgtcgtcgccgccgaggctggtgcgggagagctccttcttgttctgc 138 Query: 430 ttgcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttc 489 || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 137 ttccgcatctcgcggatcttggagaaatccatggagtagtccggcagcgcgccgttcttc 78 Query: 490 atgtcccagtccccgaacgccggcaccgtcatccac 525 |||||||||||||||||||||||||||||||||||| Sbjct: 77 atgtcccagtccccgaacgccggcaccgtcatccac 42 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttccttccggtgggcga 266 |||||||||||| |||||||||||||| |||||||| ||| || ||||||| || ||||| Sbjct: 360 tcttcaggccttaatacagcactggaagtagctcagaaacgtcctccttcccgtcggcga 301 Query: 267 gtcgtcgcggccgtggag 284 | ||| |||||| ||||| Sbjct: 300 gccgtggcggccatggag 283
>ref|NM_196413.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA Length = 453 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 204 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 145 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 144 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 85 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 84 gtcccactccccgaacgccggcaccgtcatccac 51
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 164892 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 164833 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 164832 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 164773 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 164772 gtcccactccccgaacgccggcaccgtcatccac 164739 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcct 254 ||||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct: 166872 tcttcaggctctgatacagcactggaaatagctaaggaacttcttcct 166825
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Plus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 11650 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 11709 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 11710 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 11769 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 11770 gtcccactccccgaacgccggcaccgtcatccac 11803 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcct 254 ||||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct: 9670 tcttcaggctctgatacagcactggaaatagctaaggaacttcttcct 9717
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 11020 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 10961 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 10960 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 10901 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 10900 gtcccactccccgaacgccggcaccgtcatccac 10867 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcct 254 ||||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct: 13000 tcttcaggctctgatacagcactggaaatagctaaggaacttcttcct 12953
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 13318643 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 13318584 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 13318583 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 13318524 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 13318523 gtcccactccccgaacgccggcaccgtcatccac 13318490 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcct 254 ||||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct: 13320623 tcttcaggctctgatacagcactggaaatagctaaggaacttcttcct 13320576 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgc 394 ||||||||||||||||||||||| Sbjct: 13939780 ggcgaggaggtcgtcgtcgccgc 13939758 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 8521699 cgcgggagagctccttcttgt 8521679
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 250 bits (126), Expect = 4e-63 Identities = 147/154 (95%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 13325983 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 13325924 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 13325923 gcgcatctcccggatcttggagaagtccatggagtagtccggcaccgcgccgttcttcat 13325864 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 13325863 gtcccactccccgaacgccggcaccgtcatccac 13325830 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 207 tcttcaggccttgatacagcactggaaatagctcaggaacctcttcct 254 ||||||||| |||||||||||||||||||||| |||||| ||||||| Sbjct: 13327963 tcttcaggctctgatacagcactggaaatagctaaggaacttcttcct 13327916 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgc 394 ||||||||||||||||||||||| Sbjct: 13947122 ggcgaggaggtcgtcgtcgccgc 13947100 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 8526798 cgcgggagagctccttcttgt 8526778
>dbj|AK066928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H23, full insert sequence Length = 861 Score = 242 bits (122), Expect = 1e-60 Identities = 146/154 (94%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccgaggctggcgcgggagagctccttcttgttctgctt 431 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 378 ggcgaggaggtcgtcgtccccgccgaggctggcgcgggagagctcgcgcttgttctgctt 319 Query: 432 gcgcatctcccggatcttggagaagtccatggagtagtccggcatggcgccgttcttcat 491 |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 318 gcgcatctcccggatcttggaggagtccatggagtagtccggcaccgcgccgttcttcat 259 Query: 492 gtcccagtccccgaacgccggcaccgtcatccac 525 |||||| ||||||||||||||||||||||||||| Sbjct: 258 gtcccactccccgaacgccggcaccgtcatccac 225 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 220 atacagcactggaaatagctcaggaacctcttccttccggtgggcgagtcgtcg 273 |||||||||||||||||||| |||||| ||||||| || ||||||||||||||| Sbjct: 521 atacagcactggaaatagctaaggaacttcttcctccccgtgggcgagtcgtcg 468
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 442 cggatcttggagaagtccatggagtagtccggca 475 ||||||||||||||||| | |||||||||||||| Sbjct: 80437 cggatcttggagaagtcgagggagtagtccggca 80404
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 442 cggatcttggagaagtccatggagtagtccggca 475 ||||||||||||||||| | |||||||||||||| Sbjct: 22372379 cggatcttggagaagtcgagggagtagtccggca 22372412
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 442 cggatcttggagaagtccatggagtagtccggca 475 ||||||||||||||||| | |||||||||||||| Sbjct: 22682290 cggatcttggagaagtcgagggagtagtccggca 22682323
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgc 394 ||||||||||||||||||||||| Sbjct: 108406 ggcgaggaggtcgtcgtcgccgc 108384
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 507 cgccggcaccgtcatccacgccgtcgc 533 |||||||||||||||||||||| |||| Sbjct: 3653710 cgccggcaccgtcatccacgccatcgc 3653684
>gb|AF411804.1| Lycopersicon esculentum BAC clone Clemson_ID 47I13, complete sequence Length = 100810 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 caggaacctcttccttccggtg 261 |||||||||||||||||||||| Sbjct: 62287 caggaacctcttccttccggtg 62266
>gb|L43074.1|STMFABD Streptomyces glaucescens fabD, fabH, fabC, fabB, and ORF5 genes, complete cds Length = 4558 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 378 gaggtcgtcgtcgccgccgagg 399 |||||||||||||||||||||| Sbjct: 2256 gaggtcgtcgtcgccgccgagg 2277
>ref|XM_482868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1811 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 766 cgcgggagagctccttcttgt 786
>ref|XM_482867.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2751 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 2014 cgcgggagagctccttcttgt 1994
>ref|XM_482864.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1811 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 766 cgcgggagagctccttcttgt 786
>ref|XM_482863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3147 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 2134 cgcgggagagctccttcttgt 2114
>ref|XM_480923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1247 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccg 396 ||||| ||||||||||||||||||| Sbjct: 734 ggcgaagaggtcgtcgtcgccgccg 710
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 ggtcgtcgtcgccgccgaggc 400 ||||||||||||||||||||| Sbjct: 45890 ggtcgtcgtcgccgccgaggc 45910
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tgggcgaggaggtcgtcgtcg 390 ||||||||||||||||||||| Sbjct: 2246300 tgggcgaggaggtcgtcgtcg 2246280
>emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in linkage group 11 Contains three novel genes, the opn1lw1 gene for opsin 1 (cone pigments), long-wave-sensitive, 1, a gene for novel protein similar to human and rodent member RAS oncogene family RAB7 (RAB7), a gene for novel protein remotely similar to human host cell factor 1 (VP16-accessory protein) (HCFC1), the opn1sw2 gene for opsin 1 (cone pigments), short-wave-sensitive 1, a gene for novel protein similar to human and mouse CpG binding protein (CGBP), a gene for novel protein similar to vertebrate microphthalmia-associated transcription factor (MITF) and zebrafish transcription factor binding to IGHM enhancer 3a (tfe3a), a gene for novel protein similar to human and rodent catechol-O-methyltransferase (COMT), the flj10613l gene for hypothetical protein FLJ10613-like (H. sapiens), a gene for novel protein similar to human and mouse methyl-CpG binding domain protein 1 (MBD1), a gene for novel protein similar to zebrafish red-sensitive opsin (rdops), a gene for novel protein similar to mouse and human host cell factor C1 (VP16-accessory protein) (HCFC1), a gene for novel protein similar to human and rodent metabotropic glutamate receptors (GRM) and two CpG islands, complete sequence Length = 235174 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cattcacttgttgcaaacttg 145 ||||||||||||||||||||| Sbjct: 180442 cattcacttgttgcaaacttg 180462
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 ggcgagtcgtcgcggccgtgg 282 ||||||||||||||||||||| Sbjct: 129349 ggcgagtcgtcgcggccgtgg 129369
>emb|AJ224512.2|SNO224512 Streptomyces nogalater nogalamycin biosynthesis genes Length = 19632 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 cgtggagcgggccgtggtctt 298 ||||||||||||||||||||| Sbjct: 17355 cgtggagcgggccgtggtctt 17335
>emb|AJ006687.1|CCR6687 Caulobacter crescentus major chemotaxis operon Length = 7821 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 tccttccggtgggcgagtcgtcgcg 275 |||||||||||||||||| |||||| Sbjct: 6140 tccttccggtgggcgagttgtcgcg 6164
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 gtcgtcgtcgccgccgaggctggcg 405 ||||||||||||||| ||||||||| Sbjct: 2659732 gtcgtcgtcgccgccaaggctggcg 2659756
>gb|AE005716.1| Caulobacter crescentus CB15 section 42 of 359 of the complete genome Length = 10119 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 tccttccggtgggcgagtcgtcgcg 275 |||||||||||||||||| |||||| Sbjct: 8544 tccttccggtgggcgagttgtcgcg 8568
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0093I09, from Chromosome 10, complete sequence Length = 172434 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 2796 cgcgggagagctccttcttgt 2776
>gb|AC148693.1| Macaca mulatta Major Histocompatibility Complex BAC MMU240D05, complete sequence Length = 161692 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 aacttgaccaaacaccaaagaagcc 164 ||||||||||| ||||||||||||| Sbjct: 104000 aacttgaccaatcaccaaagaagcc 103976
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 ggcgagtcgtcgcggccgtgg 282 ||||||||||||||||||||| Sbjct: 29456333 ggcgagtcgtcgcggccgtgg 29456353
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 23045445 cgcgggagagctccttcttgt 23045465 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 23030252 cgcgggagagctccttcttgt 23030232 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 372 ggcgaggaggtcgtcgtcgccgccg 396 ||||| ||||||||||||||||||| Sbjct: 8633684 ggcgaagaggtcgtcgtcgccgccg 8633708 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 3683920 gaggtcgtcgtcgccgccga 3683901
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 ggtcgtcgtcgccgccgaggc 400 ||||||||||||||||||||| Sbjct: 18878512 ggtcgtcgtcgccgccgaggc 18878532
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 372 ggcgaggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| |||| Sbjct: 1919568 ggcgaggaggtcgtcgtcgctgccg 1919592 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 6991633 gaggtcgtcgtcgccgccga 6991614
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 aggtcgtcgtcgccgccgagg 399 ||||||||||||||||||||| Sbjct: 1552151 aggtcgtcgtcgccgccgagg 1552171
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cggtgggcgagtcgtcgcggc 277 ||||||||||||||||||||| Sbjct: 2127401 cggtgggcgagtcgtcgcggc 2127381
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 372 ggcgaggaggtcgtcgtcgccgccg 396 ||||| ||||||||||||||||||| Sbjct: 145595 ggcgaagaggtcgtcgtcgccgccg 145619
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 105173 cgcgggagagctccttcttgt 105193 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 89980 cgcgggagagctccttcttgt 89960
>dbj|AK121810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098A20, full insert sequence Length = 3147 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 2134 cgcgggagagctccttcttgt 2114
>dbj|AK110377.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C08, full insert sequence Length = 2609 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ggtcgtcgtcgccgccgaggc 400 ||||||||||||||||||||| Sbjct: 2035 ggtcgtcgtcgccgccgaggc 2015
>dbj|AK107363.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A08, full insert sequence Length = 1811 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 766 cgcgggagagctccttcttgt 786
>dbj|AK107305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence Length = 1247 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 372 ggcgaggaggtcgtcgtcgccgccg 396 ||||| ||||||||||||||||||| Sbjct: 734 ggcgaagaggtcgtcgtcgccgccg 710
>dbj|AK102363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091J17, full insert sequence Length = 2361 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 1391 cgcgggagagctccttcttgt 1371
>dbj|AK101662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057L03, full insert sequence Length = 1970 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 878 cgcgggagagctccttcttgt 858
>emb|X15820.1|OSNIA134 Oryza sativa partial nia1 gene for nitrate reductase apoenzyme, exons 3-4 Length = 2000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cgcgggagagctccttcttgt 424 ||||||||||||||||||||| Sbjct: 1048 cgcgggagagctccttcttgt 1028
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 caccgtcatccacgccgtcgc 533 ||||||||||||||||||||| Sbjct: 1906486 caccgtcatccacgccgtcgc 1906466 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 374 cgaggaggtcgtcgtcgccgccgag 398 |||| |||||||||||||||||||| Sbjct: 846829 cgagcaggtcgtcgtcgccgccgag 846805 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gctggcgcgggagagctcct 418 |||||||||||||||||||| Sbjct: 2805059 gctggcgcgggagagctcct 2805078
>gb|AY579780.1| Avian pneumovirus from USA, complete genome Length = 13134 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tcatgctggcagcagttggt 207 |||||||||||||||||||| Sbjct: 4542 tcatgctggcagcagttggt 4561
>ref|XM_465635.1| Oryza sativa (japonica cultivar-group), mRNA Length = 747 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 495 ggaggtcgtcgtcgccgccg 476
>ref|XM_366349.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG10567.4) partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tggtgggcgaggaggtcgtc 386 |||||||||||||||||||| Sbjct: 963 tggtgggcgaggaggtcgtc 982
>gb|BC052065.1| Mus musculus Rap1 GTPase-activating protein, mRNA (cDNA clone MGC:62462 IMAGE:5708181), complete cds Length = 3215 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gtcgtcgtcgccgccgaggc 400 |||||||||||||||||||| Sbjct: 1456 gtcgtcgtcgccgccgaggc 1437
>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194848 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 cttggagaagtccatggagt 466 |||||||||||||||||||| Sbjct: 109910 cttggagaagtccatggagt 109891
>ref|XM_979077.1| PREDICTED: Mus musculus Rap1, GTPase-activating protein 1 (Rap1ga1), mRNA Length = 3230 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gtcgtcgtcgccgccgaggc 400 |||||||||||||||||||| Sbjct: 1461 gtcgtcgtcgccgccgaggc 1442
>ref|XM_149500.8| PREDICTED: Mus musculus Rap1, GTPase-activating protein 1, transcript variant 1 (Rap1ga1), mRNA Length = 3218 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gtcgtcgtcgccgccgaggc 400 |||||||||||||||||||| Sbjct: 1449 gtcgtcgtcgccgccgaggc 1430
>ref|XM_741713.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g01260) partial mRNA Length = 1782 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 ttctgcttgcgcatctcccg 443 |||||||||||||||||||| Sbjct: 1220 ttctgcttgcgcatctcccg 1201
>gb|AY337138.1| Uncultured sulfate-reducing bacterium clone M300087 dissimilatory sulfite reductase subunits alpha and beta (dsrAB) gene, partial sequence Length = 1264 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cggcaccgtcatccacgccg 529 |||||||||||||||||||| Sbjct: 57 cggcaccgtcatccacgccg 76
>gb|DQ148256.1| Macaca mulatta clone ss1_e15_t7_495 3' UTR Length = 279 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gagcttggtgggctgggggg 331 |||||||||||||||||||| Sbjct: 100 gagcttggtgggctgggggg 81
>gb|DQ148245.1| Macaca mulatta clone ss1_m08_t7_482 3' UTR Length = 280 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gagcttggtgggctgggggg 331 |||||||||||||||||||| Sbjct: 98 gagcttggtgggctgggggg 79
>gb|DQ148175.1| Macaca mulatta clone ss1_c16_t7_392 3' UTR Length = 279 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gagcttggtgggctgggggg 331 |||||||||||||||||||| Sbjct: 186 gagcttggtgggctgggggg 205
>gb|AC164100.2| Mus musculus BAC clone RP23-11E1 from chromosome 14, complete sequence Length = 214128 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 caagattgtaccttgacatt 49 |||||||||||||||||||| Sbjct: 213791 caagattgtaccttgacatt 213772
>emb|X86475.1|SCDNAFABD S.coelicolor fabD, fabH, and acpP genes Length = 2525 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 2350 gaggtcgtcgtcgccgccga 2369
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 138378 gaggtcgtcgtcgccgccga 138397
>gb|AE011971.1| Xanthomonas axonopodis pv. citri str. 306, section 349 of 469 of the complete genome Length = 11634 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 cttgttctgcttgcgcatctcccg 443 |||||||| ||||||||||||||| Sbjct: 9793 cttgttcttcttgcgcatctcccg 9770
>ref|NM_134301.3| Drosophila melanogaster caudal CG1759-RB, transcript variant B (cad), mRNA Length = 2227 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 1217 ccttcttgttctgcttgcgc 1198
>ref|NM_057606.4| Drosophila melanogaster caudal CG1759-RA, transcript variant A (cad), mRNA Length = 2519 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 1376 ccttcttgttctgcttgcgc 1357
>gb|AY069565.1| Drosophila melanogaster LD29596 full length cDNA Length = 2518 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 1354 ccttcttgttctgcttgcgc 1335
>gb|L49462.1|NIAMTZB Catenotaenia lobata 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 290 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caatttgtctcccacacaaa 75 |||||||||||||||||||| Sbjct: 250 caatttgtctcccacacaaa 231
>gb|AF368170.1|AF368170 Avian pneumovirus fusion protein gene, partial cds Length = 1596 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tcatgctggcagcagttggt 207 |||||||||||||||||||| Sbjct: 1502 tcatgctggcagcagttggt 1521
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccgaggc 400 ||||| |||||||||||||||||| Sbjct: 45813 ggaggccgtcgtcgccgccgaggc 45790
>gb|AC148706.1| Macaca mulatta Major Histocompatibility Complex BAC MMU370O02, complete sequence Length = 181896 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 cttgaccaaacaccaaagaagcct 165 ||||||||| |||||||||||||| Sbjct: 94324 cttgaccaatcaccaaagaagcct 94301
>dbj|AK019076.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310004O14 product:Rap1, GTPase-activating protein 1, full insert sequence Length = 3181 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gtcgtcgtcgccgccgaggc 400 |||||||||||||||||||| Sbjct: 1406 gtcgtcgtcgccgccgaggc 1387
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgaggaggtcgtcgtcgccg 393 |||||||||||||||||||| Sbjct: 24879170 cgaggaggtcgtcgtcgccg 24879189
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 25879577 ggaggtcgtcgtcgccgccg 25879558
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 16496430 ggaggtcgtcgtcgccgccg 16496411 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 16495765 ggaggtcgtcgtcgccgccg 16495746
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 51943 ccttcttgttctgcttgcgc 51924
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgaggaggtcgtcgtcgccg 393 |||||||||||||||||||| Sbjct: 62802 cgaggaggtcgtcgtcgccg 62821
>gb|AY590688.1| Avian pneumovirus strain Colorado, complete genome Length = 14150 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tcatgctggcagcagttggt 207 |||||||||||||||||||| Sbjct: 4542 tcatgctggcagcagttggt 4561
>gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 216930 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 cttggagaagtccatggagt 466 |||||||||||||||||||| Sbjct: 192848 cttggagaagtccatggagt 192829
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 7417 gaggtcgtcgtcgccgccga 7398
>gb|AF187153.1|AF187153 Avian pneumovirus isolate 1b fusion protein mRNA, complete cds Length = 1666 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tcatgctggcagcagttggt 207 |||||||||||||||||||| Sbjct: 1515 tcatgctggcagcagttggt 1534
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 34675 ggaggtcgtcgtcgccgccg 34656
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 161781 ggaggtcgtcgtcgccgccg 161762
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgaggaggtcgtcgtcgccg 393 |||||||||||||||||||| Sbjct: 113621 cgaggaggtcgtcgtcgccg 113640
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 69845 ggaggtcgtcgtcgccgccg 69826 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 69180 ggaggtcgtcgtcgccgccg 69161
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gaggtcgtcgtcgccgccga 397 |||||||||||||||||||| Sbjct: 162426 gaggtcgtcgtcgccgccga 162407
>dbj|AK109579.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A03, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 cgaggaggtcgtcgtcgccg 393 |||||||||||||||||||| Sbjct: 935 cgaggaggtcgtcgtcgccg 954
>dbj|AK059777.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B01, full insert sequence Length = 948 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccg 396 |||||||||||||||||||| Sbjct: 73 ggaggtcgtcgtcgccgccg 54
>gb|AF085228.1|AF085228 Avian pneumovirus matrix protein (M) gene, partial cds; and fusion glycoprotein (F) gene, complete cds Length = 1860 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tcatgctggcagcagttggt 207 |||||||||||||||||||| Sbjct: 1717 tcatgctggcagcagttggt 1736
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 41757 ccttcttgttctgcttgcgc 41738
>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11, complete sequence Length = 230267 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 attcacttgttgcaaacttg 145 |||||||||||||||||||| Sbjct: 188480 attcacttgttgcaaacttg 188461
>emb|AJ318065.1|PVI318065 Pseudorabies virus ul39 gene (partial), ul36 gene, ul37 gene and ul38 gene (partial) Length = 6126 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 ggaggtcgtcgtcgccgccgaggc 400 ||||| |||||||||||||||||| Sbjct: 1757 ggaggccgtcgtcgccgccgaggc 1780
>emb|X80797.1|PVPCA Pseudorabies Virus genomic DNA Length = 5657 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggaggtcgtcgtcgccgccgaggc 400 ||||| |||||||||||||||||| Sbjct: 1452 ggaggccgtcgtcgccgccgaggc 1429
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ccttcttgttctgcttgcgc 435 |||||||||||||||||||| Sbjct: 37594 ccttcttgttctgcttgcgc 37613
>gb|AC134987.5| Mus musculus BAC clone RP23-117E24 from 14, complete sequence Length = 196751 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 caagattgtaccttgacatt 49 |||||||||||||||||||| Sbjct: 283 caagattgtaccttgacatt 264
>emb|AL805954.9| Mouse DNA sequence from clone RP23-277N22 on chromosome 4, complete sequence Length = 127548 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gtcgtcgtcgccgccgaggc 400 |||||||||||||||||||| Sbjct: 99013 gtcgtcgtcgccgccgaggc 98994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,858,629 Number of Sequences: 3902068 Number of extensions: 3858629 Number of successful extensions: 83499 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81554 Number of HSP's gapped (non-prelim): 1945 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)