ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8 28 5.8
2VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160] 28 7.5

>YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8|
          Length = 397

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -3

Query: 250 CMHACMHSSLLSAKD*FKYQMLHQLLHFTEPILQNKDIRTIL---HHIMRIVVCHSCNNV 80
           C     HSS LS      +   ++     + I  ++ +RT +   HHI R+ +C  CN  
Sbjct: 56  CSKVFCHSSSLSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMCRCCNWA 115

Query: 79  YKSPSIL 59
           +   S+L
Sbjct: 116 FPDKSLL 122



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>VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160]|
          Length = 1790

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3

Query: 322  VITQSSMAHVLREQIRYSASVVEACMHACMHSSLLSAKD*FKYQMLHQLLHF 167
            +I Q  + HV +EQ++     + AC +  + ++ L   D  KYQ+ +Q L++
Sbjct: 1319 LINQDPLYHVCKEQMQQKNFQLPACQNMTIKANFL---DHIKYQVQYQKLNW 1367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,988,338
Number of Sequences: 219361
Number of extensions: 760623
Number of successful extensions: 1722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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