Clone Name | rbah62e09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8 | 28 | 5.8 | 2 | VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160] | 28 | 7.5 |
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>YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8| Length = 397 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -3 Query: 250 CMHACMHSSLLSAKD*FKYQMLHQLLHFTEPILQNKDIRTIL---HHIMRIVVCHSCNNV 80 C HSS LS + ++ + I ++ +RT + HHI R+ +C CN Sbjct: 56 CSKVFCHSSSLSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMCRCCNWA 115 Query: 79 YKSPSIL 59 + S+L Sbjct: 116 FPDKSLL 122
>VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160]| Length = 1790 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -3 Query: 322 VITQSSMAHVLREQIRYSASVVEACMHACMHSSLLSAKD*FKYQMLHQLLHF 167 +I Q + HV +EQ++ + AC + + ++ L D KYQ+ +Q L++ Sbjct: 1319 LINQDPLYHVCKEQMQQKNFQLPACQNMTIKANFL---DHIKYQVQYQKLNW 1367 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,988,338 Number of Sequences: 219361 Number of extensions: 760623 Number of successful extensions: 1722 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1721 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)