ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ634002.1| Schedonorus arundinaceus mRNA for catalase (cat1... 62 1e-06
2gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 4.3
3gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosom... 40 4.3
4gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosom... 40 4.3
5dbj|D86327.1| Triticum aestivum mRNA for catalase, complete cds 40 4.3

>emb|AJ634002.1| Schedonorus arundinaceus mRNA for catalase (cat1 gene)
          Length = 1735

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 70   ggctcttgtacacattattacatgaatgacagacg 104
            |||||||||||| ||||||||||||||||||||||
Sbjct: 1691 ggctcttgtacaaattattacatgaatgacagacg 1657



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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     agtagctgatgtagcatttg 193
               ||||||||||||||||||||
Sbjct: 1517266 agtagctgatgtagcatttg 1517247



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>gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosome 10, complete
             sequence
          Length = 210306

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tagctgatgtagcatttggt 195
             ||||||||||||||||||||
Sbjct: 64030 tagctgatgtagcatttggt 64049



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>gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosome 10, complete sequence
          Length = 212773

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tagctgatgtagcatttggt 195
              ||||||||||||||||||||
Sbjct: 165707 tagctgatgtagcatttggt 165726



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>dbj|D86327.1| Triticum aestivum mRNA for catalase, complete cds
          Length = 1573

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  tttgccgataagagggaaga 229
            ||||||||||||||||||||
Sbjct: 1573 tttgccgataagagggaaga 1554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,830,056
Number of Sequences: 3902068
Number of extensions: 1830056
Number of successful extensions: 30761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30750
Number of HSP's gapped (non-prelim): 11
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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