ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62e04 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.3 bits (212), Expect(2) = 5e-32 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 69.3 bits (168), Expect(2) = 5e-32 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 395 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 66.6 bits (161), Expect(2) = 1e-22 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -1 Query: 258 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 57.4 bits (137), Expect(2) = 1e-22 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 405 ENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect(2) = 3e-22 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -1 Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 55.1 bits (131), Expect(2) = 3e-22 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 405 ENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 63.9 bits (154), Expect(2) = 1e-20 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -1 Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 148 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 53.1 bits (126), Expect(2) = 1e-20 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 403 ENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 395 ENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 58.2 bits (139), Expect = 5e-09 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 405 ENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 57.8 bits (138), Expect = 6e-09 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 303 +NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 392 ENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 55.5 bits (132), Expect = 3e-08 Identities = 24/32 (75%), Positives = 31/32 (96%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFY 306 +NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 401 ENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 54.3 bits (129), Expect = 7e-08 Identities = 25/31 (80%), Positives = 29/31 (93%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSF 309 +NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 405 ENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/32 (68%), Positives = 31/32 (96%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFY 306 +NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 407 ENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/32 (68%), Positives = 31/32 (96%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFY 306 +NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 409 ENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/31 (70%), Positives = 28/31 (90%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSF 309 +NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 409 ENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 50.1 bits (118), Expect = 1e-06 Identities = 22/32 (68%), Positives = 27/32 (84%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTGSFY 306 +NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 409 ENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 47.8 bits (112), Expect = 6e-06 Identities = 21/29 (72%), Positives = 26/29 (89%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAALGDANQDAMKTG 315 +NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 404 ENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 401 DNVKRVQLADTYMSQAAL 348 +NVKRVQLAD Y+S A L Sbjct: 377 ENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -1 Query: 315 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 157 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +3 Query: 159 CRRRSLPLGRSSWHFGRCNLP 221 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 273 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 389 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -2 Query: 398 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 264 NVK V + D A N M+ GSF I+ HP + A Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 229 ARAGRLHRPKCQELRPNGKERRR 161 A+ R R K Q LRPNG E+RR Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -1 Query: 225 VPEGCTDQNAKNYDPTARSD 166 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 111 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 215 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38
>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)| (EF-1AO1) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -2 Query: 398 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 264 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -2 Query: 398 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 264 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 85 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 246 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113
>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) Length = 378 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 312 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 196 LLRL+N +S G+GA G+ P GC + N+ Sbjct: 88 LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,949,040 Number of Sequences: 219361 Number of extensions: 1255468 Number of successful extensions: 3132 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3131 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
