ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 666 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 523 e-145
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 521 e-145
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 488 e-135
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 444 e-121
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 387 e-104
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 234 2e-58
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 4e-41
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 5e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 5e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 5e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 68 2e-08
27gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
28gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
29gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
31gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 64 4e-07
32gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 64 4e-07
33gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 64 4e-07
34gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.34
35gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.34
36emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.34
37gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.4
38gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.4
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
40gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.4
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
42emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.4
43gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.4
44gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.4
45gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 5.4
46gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 5.4
47gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.4
48ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (... 40 5.4
49ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 5.4
50gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 5.4
51gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 5.4
52gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 5.4
53gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 5.4
54gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 5.4
55ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 5.4
56gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.4
57dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.4
58gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.4
59gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 5.4
60gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 5.4
61gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 5.4
62emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 5.4
63ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 5.4
64ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 5.4
65gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 5.4
66gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 5.4
67gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.4 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  666 bits (336), Expect = 0.0
 Identities = 374/380 (98%), Gaps = 5/380 (1%)
 Strand = Plus / Minus

                                                                        
Query: 28   aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 86
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 87   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 145
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 146  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 204
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                        
Query: 205  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 263
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                                        
Query: 264  tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 322
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403

                                                                        
Query: 323  tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343

                                
Query: 383  gcacacgcttgacattgtcc 402
            ||||||||||||||||||||
Sbjct: 1342 gcacacgcttgacattgtcc 1323
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  523 bits (264), Expect = e-145
 Identities = 351/377 (93%), Gaps = 11/377 (2%)
 Strand = Plus / Minus

                                                                       
Query: 32  ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 91
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 92  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 145
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                                       
Query: 146 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
           ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590

                                                                       
Query: 206 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcctcctatg 265
           |||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530

                                                                       
Query: 266 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 325
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470

                                                                       
Query: 326 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 410

                            
Query: 386 cacgcttgacattgtcc 402
           |||||||||||||||||
Sbjct: 409 cacgcttgacattgtcc 393
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  521 bits (263), Expect = e-145
 Identities = 334/355 (94%), Gaps = 7/355 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 107
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 108  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 167
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 168  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 227
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 228  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 287
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 288  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 347
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                   
Query: 348  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 1243
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  488 bits (246), Expect = e-135
 Identities = 256/258 (99%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatatat 59
            ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 7780 tgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagagatatat 7721

                                                                        
Query: 60   taacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatca 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7720 taacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatca 7661

                                                                        
Query: 120  gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccg 7601

                                                                        
Query: 180  ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 7541

                              
Query: 240  gctgtgctcctttacctc 257
            ||||||||||||||||||
Sbjct: 7540 gctgtgctcctttacctc 7523



 Score =  297 bits (150), Expect = 1e-77
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                        
Query: 253  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 313  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                          
Query: 373  tcagcaagctgcacacgcttgacattgtcc 402
            ||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcc 7206
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  444 bits (224), Expect = e-121
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 28   aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 87
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 88   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 148  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 208  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 255
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  198 bits (100), Expect = 1e-47
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                        
Query: 303  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                    
Query: 363  catgtaggtgtcagcaagctgcacacgcttgacattgtcc 402
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcc 1068
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  387 bits (195), Expect = e-104
 Identities = 308/342 (90%), Gaps = 9/342 (2%)
 Strand = Plus / Minus

                                                                        
Query: 68   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 121
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 122  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 180
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 181  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 240
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 241  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 300
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 301  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 360
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                      
Query: 361  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 402
            |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcc 1254
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  234 bits (118), Expect = 2e-58
 Identities = 121/122 (99%)
 Strand = Plus / Minus

                                                                       
Query: 281 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 340
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 341 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

             
Query: 401 cc 402
           ||
Sbjct: 188 cc 187
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 127  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 186
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 187  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 246
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 247  tcctttacc 255
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  159 bits (80), Expect = 8e-36
 Identities = 95/100 (95%)
 Strand = Plus / Minus

                                                                        
Query: 303  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 362
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                    
Query: 363  catgtaggtgtcagcaagctgcacacgcttgacattgtcc 402
            |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcc 1264
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgac 1217
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgac 1255
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgac 1254
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgac 1038
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgac 1259
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 136    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 196    ggcattttggtcggtgcaaccttccggcacgggca 230
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                          
Query: 299    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 358
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                   
Query: 359    ggctcatgtaggtgtcagcaagctgcacacgcttgac 395
               ||||| |||    ||||| |||||||||||||||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgac 108402



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 154    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 214    accttccggcacggg 228
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 136   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 196   ggcattttggtcggtgcaaccttccggcacgggca 230
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                         
Query: 299   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 358
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                  
Query: 359   ggctcatgtaggtgtcagcaagctgcacacgcttgac 395
              ||||| |||    ||||| |||||||||||||||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgac 30279



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 154   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 214   accttccggcacggg 228
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgac 1223
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 363
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                            
Query: 364  atgtaggtgtcagcaagctgcacacgcttgac 395
            | |||    ||||| |||||||||||||||||
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgac 1218
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 136      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 196      ggcattttggtcggtgcaaccttccggcacgggca 230
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                            
Query: 299      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 358
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                     
Query: 359      ggctcatgtaggtgtcagcaagctgcacacgcttgac 395
                 ||||| |||    ||||| |||||||||||||||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgac 28303541



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 154      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 214      accttccggcacggg 228
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 136      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 196      ggcattttggtcggtgcaaccttccggcacgggca 230
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                            
Query: 299      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 358
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                     
Query: 359      ggctcatgtaggtgtcagcaagctgcacacgcttgac 395
                 ||||| |||    ||||| |||||||||||||||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgac 28285990



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 154      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 214      accttccggcacggg 228
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 363
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                            
Query: 364  atgtaggtgtcagcaagctgcacacgcttgac 395
            | |||    ||||| |||||||||||||||||
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgac 1253
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 142 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 201
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 202 ttggtcggtgcaaccttccggcacgggca 230
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 7e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 253  acctcctcct 262
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                              
Query: 362  tcatgtaggtgtcagcaagctgcacacgcttgac 395
            ||| |||    ||||| |||||||||||||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgac 1266
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 136 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 196 ggcattttggtcggtgcaaccttccggcacgggca 230
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 136     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 196     ggcattttggtcggtgcaaccttccggcacgggca 230
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 136   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 196   ggcattttggtcggtgcaaccttccggcacgggca 230
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 302 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 361
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                             
Query: 362 tcatgtaggtgtcagcaagctgcacacgcttgac 395
           ||| |||    ||||| |||||||||||||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgac 472
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                       
Query: 308 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 367
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                       
Query: 368 aggtgtcagcaagctgcacacgcttgac 395
           |  |||||||||||||||||||||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgac 832
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                        
Query: 308  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 367
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 368  aggtgtcagcaagctgcacacgcttgac 395
            |  |||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                        
Query: 308  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 367
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 368  aggtgtcagcaagctgcacacgcttgac 395
            |  |||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 328  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 377
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 341   catcacccagagctgcctggct 362
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 41    aatatatttagagatatattaa 62
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    tatatttagagatatattaac 63
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    tatatttagagatatattaac 63
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 112     aaacatcagatattaaaagtg 132
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 263   atgcagcaagagatggtgggt 283
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 112     aaacatcagatattaaaagtg 132
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    aaacatcagatattaaaagtg 132
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   tatatttagagatatattaac 63
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   cctttacctcctcctatgca 267
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
to top
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  cctttacctcctcctatgca 267
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   cctttacctcctcctatgca 267
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
to top
>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ggtctttgccaatgggtata 37
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266
to top
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 gtcagcaagctgcacacgct 391
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcagatattaaaagtggcat 136
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
to top
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcagatattaaaagtggcat 136
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   tcagatattaaaagtggcat 136
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
to top
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aatatatttagagatatatt 60
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
to top
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 145  ggtgtaaaggcagctgccgtcgtcgctc 172
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
to top
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aaacatgcccagcaatcgcttgga 88
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
to top
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   cctttacctcctcctatgca 267
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
to top
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
to top
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
to top
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tggcatgcttaaaaggtgta 150
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
to top
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  catcacccagagctgcctggctca 364
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 237 cttgctgtgctcctttacctcctc 260
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
to top
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   cctttacctcctcctatgca 267
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
to top
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aatatatttagagatatatt 60
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
to top
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    atcagatattaaaagtggcatgct 139
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,278,815
Number of Sequences: 3902068
Number of extensions: 3278815
Number of successful extensions: 65524
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65266
Number of HSP's gapped (non-prelim): 208
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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