>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 8e-29
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -1

Query: 314 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 201
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 59.7 bits (143), Expect(2) = 8e-29
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           DNVK VQLA TYMSQAA G ANQDAMKTGSFYG
Sbjct: 395 DNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 1e-19
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -1

Query: 314 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 201
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 47.0 bits (110), Expect(2) = 1e-19
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA TY+SQAA G AN DA+  G+FYG
Sbjct: 405 ENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 2e-19
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -1

Query: 317 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 201
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 47.8 bits (112), Expect(2) = 2e-19
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA  YMS+AA G AN DA+K G+FYG
Sbjct: 405 ENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 2e-17
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -1

Query: 314 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 207
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 43.5 bits (101), Expect(2) = 2e-17
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA  YMS AA G AN+DA+  G+F+G
Sbjct: 403 ENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA  Y+S+AA G AN DAMKTGSFYG
Sbjct: 395 ENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA  Y+S+AA G AN DAMKTG+FYG
Sbjct: 392 ENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFYG 362
           +NVK VQLA  Y+S+AA G AN DAM TG+FYG
Sbjct: 405 ENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFY 365
           +NVK VQLA  Y+++AA G AN+DAMKTGSF+
Sbjct: 401 ENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSF 368
           +NVK VQLA  YMS+AA G ANQDA+K G+F
Sbjct: 405 ENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFY 365
           +NVK VQLA  Y+++AA G AN+DA+K+GSF+
Sbjct: 409 ENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFY 365
           +NVK VQLA  Y+++AA G AN+DA+K+GSF+
Sbjct: 407 ENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSF 368
           +NVK VQLA TY+ +AA G AN DA+ TG+F
Sbjct: 409 ENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTGSFY 365
           +NVK VQLA  Y+ +AA G AN DA+  GSF+
Sbjct: 409 ENVKRVQLADKYLKEAALGDANADAINNGSFF 440

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -2

Query: 460 DNVKXVQLAXTYMSQAAXGXANQDAMKTG 374
           +NVK VQLA TY+ +AA G AN DA+ TG
Sbjct: 404 ENVKRVQLAETYLKEAALGDANADAINTG 432

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 374 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 216
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 218  CRRRSLPLGRSSWHFGRCNLP 280
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,391,785
Number of Sequences: 219361
Number of extensions: 1322161
Number of successful extensions: 3265
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)