ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 656 0.0
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 587 e-164
3gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 521 e-145
4gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 498 e-138
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 448 e-123
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 363 3e-97
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 210 3e-51
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 4e-41
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 6e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 6e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 6e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 3e-08
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 3e-08
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 3e-08
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 3e-08
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 50 0.006
31emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.40
32gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.6
33gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.6
34gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.6
35gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.6
36gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.6
37dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.6
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
39gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.6
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
41emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
42gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.6
43gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 6.2
44gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 6.2
45gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 6.2
46gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 6.2
47gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 6.2
48gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 6.2
49gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 6.2
50gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.2
51dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.2
52gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 40 6.2
53gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 40 6.2
54gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 6.2
55emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 6.2
56ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 6.2
57gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 6.2
58gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 40 6.2
59gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 6.2
60gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 6.2 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  656 bits (331), Expect = 0.0
 Identities = 377/387 (97%), Gaps = 5/387 (1%)
 Strand = Plus / Minus

                                                                        
Query: 80   tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 138
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 139  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 197
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 198  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 256
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 257  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 315
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                                                        
Query: 316  cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 374
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410

                                                                        
Query: 375  ccagtcttcatcgcatcctggttagcatnacccanagctgcctggctcatgtaggtgnca 434
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1350

                                       
Query: 435  gcaagctgcacacncttgacattgtcc 461
            ||||||||||||| |||||||||||||
Sbjct: 1349 gcaagctgcacacgcttgacattgtcc 1323
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  587 bits (296), Expect = e-164
 Identities = 306/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Minus

                                                                        
Query: 9    caaagcagaaggagtctccactgaaggaatgaatactgagnagtgacaaatgataagtag 68
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7829 caaagcagaaggagtctccactgaaggaatgaatactgag-agtgacaaatgataagtag 7771

                                                                        
Query: 69   gtgtattggtctttgccaaatgggtatactcaatatatttagagatatattaacaaaaca 128
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7770 gtgtattggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaaca 7711

                                                                        
Query: 129  tgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaa 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7710 tgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaa 7651

                                                                        
Query: 189  gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7650 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 7591

                                                                        
Query: 249  gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7590 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 7531

                    
Query: 309  tttacctc 316
            ||||||||
Sbjct: 7530 tttacctc 7523



 Score =  274 bits (138), Expect = 2e-70
 Identities = 146/150 (97%)
 Strand = Plus / Minus

                                                                        
Query: 312  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 372  gaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggctcatgtaggtg 431
            ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                          
Query: 432  ncagcaagctgcacacncttgacattgtcc 461
             ||||||||||||||| |||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcc 7206
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  521 bits (263), Expect = e-145
 Identities = 379/416 (91%), Gaps = 11/416 (2%)
 Strand = Plus / Minus

                                                                       
Query: 52  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 111
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 112 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 166
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 167 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 225
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 226 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 285
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                       
Query: 286 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 345
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                                                       
Query: 346 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatnac 405
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449

                                                                   
Query: 406 ccanagctgcctggctcatgtaggtgncagcaagctgcacacncttgacattgtcc 461
           ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 393
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  498 bits (251), Expect = e-138
 Identities = 330/355 (92%), Gaps = 7/355 (1%)
 Strand = Plus / Minus

                                                                        
Query: 113  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 166
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 167  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 226
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 227  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 286
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 287  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 346
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 347  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatnacc 406
            ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                   
Query: 407  canagctgcctggctcatgtaggtgncagcaagctgcacacncttgacattgtcc 461
            || |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 1243
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 85   caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 144
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 145  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 205  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 265  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  174 bits (88), Expect = 2e-40
 Identities = 96/100 (96%)
 Strand = Plus / Minus

                                                                        
Query: 362  accgtagaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggct 421
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                    
Query: 422  catgtaggtgncagcaagctgcacacncttgacattgtcc 461
            |||||||||| ||||||||||||||| |||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcc 1068
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  363 bits (183), Expect = 3e-97
 Identities = 304/342 (88%), Gaps = 9/342 (2%)
 Strand = Plus / Minus

                                                                        
Query: 127  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 180
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 181  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 239
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 240  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 299
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 300  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 359
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 360  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctgg 419
            |||||||||||||||||||||||||| ||||||| ||| |||| ||||| ||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                      
Query: 420  ctcatgtaggtgncagcaagctgcacacncttgacattgtcc 461
            |||||||| ||| | ||||||||||||| |||||||||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcc 1254
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  210 bits (106), Expect = 3e-51
 Identities = 117/122 (95%)
 Strand = Plus / Minus

                                                                       
Query: 340 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 399
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 400 catnacccanagctgcctggctcatgtaggtgncagcaagctgcacacncttgacattgt 459
           ||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

             
Query: 460 cc 461
           ||
Sbjct: 188 cc 187
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 186  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 245
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 246  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 305
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 306  tcctttacc 314
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  135 bits (68), Expect = 1e-28
 Identities = 91/100 (91%)
 Strand = Plus / Minus

                                                                        
Query: 362  accgtagaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggct 421
            |||||||||||||||||||||||| ||||||| ||| |||| ||||| ||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                    
Query: 422  catgtaggtgncagcaagctgcacacncttgacattgtcc 461
            |||||| ||| | ||||||||||||| |||||||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcc 1264
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1310 aaccgtagaaggaaccagtcttcat 1286
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1348 aaccgtagaaggaaccagtcttcat 1324
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1347 aaccgtagaaggaaccagtcttcat 1323
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1131 aaccgtagaaggaaccagtcttcat 1107
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1352 aaccgtagaaggaaccagtcttcat 1328
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 195    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 255    ggcattttggtcggtgcaaccttccggcacgggca 289
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 358    tctaaccgtagaaggaaccagtcttcat 385
              ||||||||||||||||||||||||||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcat 108333



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 213    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 272
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 273    accttccggcacggg 287
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 195   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 255   ggcattttggtcggtgcaaccttccggcacgggca 289
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 358   tctaaccgtagaaggaaccagtcttcat 385
             ||||||||||||||||||||||||||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcat 30210



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 213   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 272
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 273   accttccggcacggg 287
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 255  ggcattttggtcggtgcaaccttccggcacgggca 289
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1316 aaccgtagaaggaaccagtcttcat 1292
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 255  ggcattttggtcggtgcaaccttccggcacgggca 289
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 363  ccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||
Sbjct: 1309 ccgtagaaggaaccagtcttcat 1287
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 195      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 255      ggcattttggtcggtgcaaccttccggcacgggca 289
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 358      tctaaccgtagaaggaaccagtcttcat 385
                ||||||||||||||||||||||||||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcat 28303472



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 213      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 272
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 273      accttccggcacggg 287
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 195      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 255      ggcattttggtcggtgcaaccttccggcacgggca 289
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 358      tctaaccgtagaaggaaccagtcttcat 385
                ||||||||||||||||||||||||||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcat 28285921



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 213      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 272
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 273      accttccggcacggg 287
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 255  ggcattttggtcggtgcaaccttccggcacgggca 289
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 363  ccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||
Sbjct: 1344 ccgtagaaggaaccagtcttcat 1322
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 201 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 260
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 261 ttggtcggtgcaaccttccggcacgggca 289
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 8e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 255  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 311
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 312  acctcctcct 321
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 361  aaccgtagaaggaaccagtcttcat 385
            |||||||||||||||||||||||||
Sbjct: 1359 aaccgtagaaggaaccagtcttcat 1335
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 195 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 255 ggcattttggtcggtgcaaccttccggcacgggca 289
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 195     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 255     ggcattttggtcggtgcaaccttccggcacgggca 289
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 195   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 254
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 255   ggcattttggtcggtgcaaccttccggcacgggca 289
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 264
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 265  tcggtgcaaccttc 278
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 264
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 265  tcggtgcaaccttc 278
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 264
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 265  tcggtgcaaccttc 278
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 264
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 265  tcggtgcaaccttc 278
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 361 aaccgtagaaggaaccagtcttcat 385
           |||||||||||||||||||||||||
Sbjct: 565 aaccgtagaaggaaccagtcttcat 541
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 100   aatatatttagagatatattaa 121
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
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>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     aatgataagtaggtgtattgg 77
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tatatttagagatatattaac 122
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   tatatttagagatatattaac 122
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     aatgataagtaggtgtattgg 77
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
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>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     aatgataagtaggtgtattgg 77
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
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>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 57   aatgataagtaggtgtattgg 77
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 171     aaacatcagatattaaaagtg 191
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   atgcagcaagagatggtgggt 342
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 171     aaacatcagatattaaaagtg 191
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 171    aaacatcagatattaaaagtg 191
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 102  tatatttagagatatattaac 122
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cctttacctcctcctatgca 326
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  cctttacctcctcctatgca 326
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cctttacctcctcctatgca 326
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcagatattaaaagtggcat 195
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcagatattaaaagtggcat 195
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcagatattaaaagtggcat 195
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   aatatatttagagatatatt 119
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 204  ggtgtaaaggcagctgccgtcgtcgctc 231
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   aaacatgcccagcaatcgcttgga 147
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 70/88 (79%)
 Strand = Plus / Minus

                                                                       
Query: 367 agaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggctcatgt 426
           ||||||| ||||||||||| || |||| ||| || | ||| | ||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                       
Query: 427 aggtgncagcaagctgcacacncttgac 454
           |  || ||||||||||||||| ||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgac 832
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 70/88 (79%)
 Strand = Plus / Minus

                                                                        
Query: 367  agaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggctcatgt 426
            ||||||| ||||||||||| || |||| ||| || | ||| | ||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 427  aggtgncagcaagctgcacacncttgac 454
            |  || ||||||||||||||| ||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cctttacctcctcctatgca 326
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tggcatgcttaaaaggtgta 209
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 296 cttgctgtgctcctttacctcctc 319
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   cctttacctcctcctatgca 326
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 70/88 (79%)
 Strand = Plus / Minus

                                                                        
Query: 367  agaaggaaccagtcttcatcgcatcctggttagcatnacccanagctgcctggctcatgt 426
            ||||||| ||||||||||| || |||| ||| || | ||| | ||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 427  aggtgncagcaagctgcacacncttgac 454
            |  || ||||||||||||||| ||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aatatatttagagatatatt 119
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    atcagatattaaaagtggcatgct 198
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,546,969
Number of Sequences: 3902068
Number of extensions: 3546969
Number of successful extensions: 68768
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 68525
Number of HSP's gapped (non-prelim): 210
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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