ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains:... 42 6e-04
2SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Pr... 39 0.009
3SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Pros... 37 0.019
4SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains:... 37 0.025
5SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains:... 36 0.043
6NUD14_ARATH (Q9SZ63) Nudix hydrolase 14, mitochondrial precursor... 33 0.48
7GLRX1_YEAST (P25373) Glutaredoxin-1 (Glutathione-dependent oxido... 32 1.1
8POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48) 31 1.4
9PSPB_MOUSE (P50405) Pulmonary surfactant-associated protein B pr... 31 1.8
10PSPB_RAT (P22355) Pulmonary surfactant-associated protein B prec... 31 1.8
11JHD1_SCHPO (O94603) Putative JmjC domain-containing histone deme... 31 1.8
12VE1_COPV (Q89536) Replication protein E1 (EC 3.6.1.-) (ATP-depen... 29 5.3
13TR11B_RAT (O08727) Tumor necrosis factor receptor superfamily me... 29 6.9
14PDXH_BDEBA (Q6MK45) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.... 28 9.1
15DPHB_METAC (Q8TR14) Probable diphthine synthase (EC 2.1.1.98) (D... 28 9.1
16ALS1_CANAL (P46590) Agglutinin-like protein 1 precursor 28 9.1

>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;|
           Saposin B; Saposin C; Saposin D]
          Length = 518

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLILVNGE 272
           C  C  LV VV   +KD  ++ EI   L K C  +   G   ECK +V  Y+P+I+   +
Sbjct: 64  CDLCKELVTVVGKVLKDNGTEDEIRSYLEKRCEFLPDQGLASECKEIVDSYLPVIMDMIK 123

Query: 271 KLLEKKD-VCTLMQACGASKKRAVGSFFDGGLRSD 170
           +  +K + VC+ +  C + +K          L+S+
Sbjct: 124 EEFDKPEVVCSALSLCQSLQKHLAAMKLQKQLQSN 158



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQE-CKRMVLEYVPLILVNGEK 269
           C  C  +V     +++   +  EI  LL K C+ +   V + C + V +Y P+++    +
Sbjct: 403 CDICKMIVAYADKELEKNATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAE 462

Query: 268 LLEKKDVCTLMQACGASKKRAVG 200
           +++   VCT +  CGA+KK  +G
Sbjct: 463 MMDPTFVCTKLGVCGAAKKPLLG 485



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>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)|
          Length = 557

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGH--VQECKRMVLEYVPLIL--VN 278
           C  C  +V    + +KD  +Q EIL  L K C  +H       CK +V  Y+P+IL  + 
Sbjct: 63  CDICKTVVTEAGNLLKDNATQEEILHYLEKTCEWIHDSSLSASCKEVVDSYLPVILDMIK 122

Query: 277 GEKLLEKKDVCTLMQAC 227
           GE +    +VC+ +  C
Sbjct: 123 GE-MSNPGEVCSALNLC 138



 Score = 35.4 bits (80), Expect = 0.074
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284
           K+   C  C  LV  +   ++   ++ EIL  L K C+ +    Q +C   V EY PL+L
Sbjct: 437 KNGGFCEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDDFVAEYEPLLL 496

Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197
               ++++   VC+ +  C ++ K  +G+
Sbjct: 497 EILVEVMDPGFVCSKIGVCPSAYKLLLGT 525



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>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)|
          Length = 554

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284
           K+   C  C  LV  +   ++   ++ EIL  L K C+ +    Q +C   V EY PL+L
Sbjct: 434 KNGGFCEVCKKLVIYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDEFVAEYEPLLL 493

Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197
               ++++   VC+ +  C ++ K  +G+
Sbjct: 494 EILVEVMDPSFVCSKIGVCPSAYKLLLGT 522



 Score = 36.6 bits (83), Expect = 0.033
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGH--VQECKRMVLEYVPLIL--VN 278
           C  C  +V    + +KD  ++ EIL  L K C  +H       CK +V  Y+P+IL  + 
Sbjct: 63  CDICKTVVTEAGNLLKDNATEEEILHYLEKTCAWIHDSSLSASCKEVVDSYLPVILDMIK 122

Query: 277 GEKLLEKKDVCTLMQAC 227
           GE +    +VC+ +  C
Sbjct: 123 GE-MSNPGEVCSALNLC 138



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>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A|
           (Protein A); Saposin B-Val; Saposin B (Sphingolipid
           activator protein 1) (SAP-1) (Cerebroside sulfate
           activator) (CSAct) (Dispersin) (Sulfatide/GM1
           activator); Saposin C (Co-beta-
          Length = 524

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284
           K    C  C  LV  +   ++   ++ EIL  L K C+ +    Q +C + V EY P+++
Sbjct: 404 KDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLI 463

Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197
               ++++   VC  + AC ++ K  +G+
Sbjct: 464 EILVEVMDPSFVCLKIGACPSAHKPLLGT 492



 Score = 35.8 bits (81), Expect = 0.057
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = -2

Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHV-QECKRMVLEYVPLI 287
           AKS+  C  C  LV  V   + +  ++ EIL    K C+K+   + +EC+ +V  Y   I
Sbjct: 309 AKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSI 368

Query: 286 LVNGEKLLEKKDVCTLMQACGASKKRAV 203
           L    + +  + VC+++  C  ++  A+
Sbjct: 369 LSILLEEVSPELVCSMLHLCSGTRLPAL 396



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLIL--VN 278
           C  C  +V      +KD  ++ EIL  L K C+ +        CK +V  Y+P+IL  + 
Sbjct: 63  CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 122

Query: 277 GEKLLEKKDVCTLMQACGASKK 212
           GE +    +VC+ +  C + +K
Sbjct: 123 GE-MSRPGEVCSALNLCESLQK 143



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>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A|
           (Protein A); Saposin B (Sphingolipid activator protein
           1) (SAP-1) (Cerebroside sulfate activator) (CSAct)
           (Dispersin) (Sulfatide/GM1 activator); Saposin C
           (Co-beta-glucosidase) (A
          Length = 525

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284
           K    C  C  LV  +   ++   ++ +IL  L K C+ +    + +C + V EY P+++
Sbjct: 405 KDGGFCEVCKKLVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCDQFVTEYEPVLI 464

Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197
               ++++   VC  + AC A+ K  +G+
Sbjct: 465 EILVEVMDPSFVCLKIGACPAAHKPLLGA 493



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -2

Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLIL--VN 278
           C  C  ++    + +KD  ++ EIL  L + C+ +        CK +V  Y+P+IL  + 
Sbjct: 63  CDICKDVITAAGNLLKDNATEQEILMYLERTCDWLPKPNMSASCKEIVDSYLPVILDMIK 122

Query: 277 GEKLLEKKDVCTLMQACGASKK 212
           G+ +    +VC+ +  C + +K
Sbjct: 123 GQ-MSHPGEVCSALNLCESLQK 143



 Score = 30.4 bits (67), Expect = 2.4
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHV-QECKRMVLEYVPLI 287
           AK++  C  C  +V  V   + +  ++ EIL  L K C+K+   + ++C+ +V  Y   I
Sbjct: 310 AKADIYCEVCEFVVKEVAKLIDNNRTEEEILHALDKVCSKLPTSLAEQCQEVVDTYGRSI 369

Query: 286 LVNGEKLLEKKDVCTLMQACGA 221
           L         + VC+++  C +
Sbjct: 370 LSILLDEASPELVCSMLHLCSS 391



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>NUD14_ARATH (Q9SZ63) Nudix hydrolase 14, mitochondrial precursor (EC 3.6.1.-)|
           (AtNUDT14)
          Length = 309

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = +2

Query: 161 SSSITPQSTIEERSNRPLLAGAT-GLHKSAY-----ILLLKELLAIDQDEGDVF*NHSLT 322
           SSS+T   T+  + N P+L  AT G+  S +       L +  L   + E  +  + S+T
Sbjct: 40  SSSLTQSITLPSQPNEPVLVSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMT 99

Query: 323 LLHMTVNLVALLDEKLKYLKLRVRIF 400
           L  + +  V +  +++ +LK +  IF
Sbjct: 100 LKQVLIQGVDMFGKRIGFLKFKADIF 125



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>GLRX1_YEAST (P25373) Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)|
          Length = 110

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -2

Query: 457 SESTCAFCHHLVDVVLSKMKDPDSQFEILQLL-IKECNKVHGHVQECKRMVLEYVPLILV 281
           S++ C +CH  ++ +  K+K P S+  +LQL  +KE   +   + E        VP I +
Sbjct: 23  SKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQ--RTVPNIYI 80

Query: 280 NGEKLLEKKDVCTLMQ 233
           NG+ +    D+  L +
Sbjct: 81  NGKHIGGNDDLQELRE 96



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>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
 Frame = +3

Query: 63  SIGTFQRTETSLYVQQSPHHPISTIPTSDVCFCHQASL-----RSPPSKNDP-----TAL 212
           SI  F+R    LY +++PHHP+           H +++      SPP +  P      AL
Sbjct: 419 SITAFRR---ELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRLPHALQKAAL 475

Query: 213 FLLAPQACIRVHTSFF---SRSFSPLTRMRGTYSR-------TILLHSCT*P*TLLHSL 359
            LL P + +   T FF    +S  P   +  T  R       +++L S +    LLH L
Sbjct: 476 LLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLSLSESSVLLHKL 534



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>PSPB_MOUSE (P50405) Pulmonary surfactant-associated protein B precursor (SP-B)|
           (Pulmonary surfactant-associated proteolipid SPL(Phe))
          Length = 377

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECN--KVHGHVQECKRMVLEYVPL 290
           A +   C  C  +V ++    K+   Q  I + L +EC+   +   V  C++++  Y+PL
Sbjct: 62  AGANDLCQECEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLKLLVPRCRQVLDVYLPL 121

Query: 289 ILVNGEKLLEKKDVCTLMQAC 227
           ++   +  +  K +C  +  C
Sbjct: 122 VIDYFQSQINPKAICNHVGLC 142



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>PSPB_RAT (P22355) Pulmonary surfactant-associated protein B precursor (SP-B)|
           (Pulmonary surfactant-associated proteolipid SPL(Phe))
          Length = 376

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECN--KVHGHVQECKRMVLEYVPL 290
           A +   C  C  +V ++    K+   Q  I + L +EC+   +   V  C++++  Y+PL
Sbjct: 61  AGANDLCQECEDIVHLLTKMTKEDAFQDTIRKFLEQECDILPLKLLVPRCRQVLDVYLPL 120

Query: 289 ILVNGEKLLEKKDVCTLMQAC 227
           ++   +  ++ K +C+ +  C
Sbjct: 121 VIDYFQGQIKPKAICSHVGLC 141



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>JHD1_SCHPO (O94603) Putative JmjC domain-containing histone demethylation|
           protein 1 (EC 1.14.11.-) (Heterochromatin-destabilizing
           protein epe1)
          Length = 948

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 109 NHLITLFPPFLQVMCVSVIKHHSA---VHHRRTIQPPS-SCWRH 228
           N   T+ PP L  +CV  ++   A    HHRR+ + PS +C+ H
Sbjct: 502 NSAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAKHPSCNCFSH 545



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>VE1_COPV (Q89536) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 597

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 LHMTVNLVALLDEKLKYLKLRVRIFHF*EDY 418
           L +T N+    DEK KYL+ R   FHF +++
Sbjct: 511 LLITTNVNVCGDEKFKYLRSRCSFFHFPQEF 541



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>TR11B_RAT (O08727) Tumor necrosis factor receptor superfamily member 11B|
           precursor (Osteoprotegerin)
          Length = 401

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
 Frame = -2

Query: 373 LQLLIKECNKVHGHVQECKR---MVLEYV-------PLILVNGEKLLEKKDVCTLMQACG 224
           LQ + +ECN+ H  V EC+    + LE+        P + V      E+  VC       
Sbjct: 90  LQTVKQECNRTHNRVCECEEGRYLELEFCLKHRSCPPGLGVLQAGTPERNTVC------- 142

Query: 223 ASKKRAVGSFFDGGLRSDA**QKHTS 146
              KR    FF G   S A  +KHT+
Sbjct: 143 ---KRCPDGFFSGETSSKAPCRKHTN 165



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>PDXH_BDEBA (Q6MK45) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP|
           oxidase) (PNPOx)
          Length = 196

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = -1

Query: 299 RPPHPGQWREAP*E-------EGCMHSYASLWRQQEEGGW 201
           RPPH G WR  P E        G +H    ++++ E+GGW
Sbjct: 151 RPPHWGGWRVIPTEIEFWFGLGGRLHE-RHIYQRTEDGGW 189



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>DPHB_METAC (Q8TR14) Probable diphthine synthase (EC 2.1.1.98) (Diphthamide|
           biosynthesis methyltransferase)
          Length = 266

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +2

Query: 116 SSPYFHHSYK*CVFLSSSITPQSTIEERSNRPLLAGATGLHKSAYILLLKELLAIDQDEG 295
           S PY + S +  + +S   TP  TI++ S         GLH   +       L ID+D+G
Sbjct: 133 SIPYPYESRRGAIIISE--TPYDTIKQNSE-------LGLHTMIF-------LDIDKDKG 176

Query: 296 DVF*NHSLTLL 328
            +  NH+L LL
Sbjct: 177 YMTANHALELL 187



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>ALS1_CANAL (P46590) Agglutinin-like protein 1 precursor|
          Length = 1260

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +3

Query: 93  SLYVQQSPHHPISTIPTSDVCFCHQASLRSPPSKNDPTALFLLAPQACIRVHTSFFSRSF 272
           S+ +++ P+H ++T       +    ++ +PP   D T +    P   +   T ++S+SF
Sbjct: 571 SVIIREPPNHTVTTTEYWSQSYATTTTVTAPPGGTD-TVIIREPPNHTVTT-TEYWSQSF 628

Query: 273 SPLTRMRGTYSRT 311
           +  T + G  S T
Sbjct: 629 ATTTTVTGPPSGT 641


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,730,403
Number of Sequences: 219361
Number of extensions: 1444000
Number of successful extensions: 3731
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3727
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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