ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61o24 |
|---|---|
| Clone Library Name | barley_pub |
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 42.4 bits (98), Expect = 6e-04 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLILVNGE 272 C C LV VV +KD ++ EI L K C + G ECK +V Y+P+I+ + Sbjct: 64 CDLCKELVTVVGKVLKDNGTEDEIRSYLEKRCEFLPDQGLASECKEIVDSYLPVIMDMIK 123 Query: 271 KLLEKKD-VCTLMQACGASKKRAVGSFFDGGLRSD 170 + +K + VC+ + C + +K L+S+ Sbjct: 124 EEFDKPEVVCSALSLCQSLQKHLAAMKLQKQLQSN 158 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQE-CKRMVLEYVPLILVNGEK 269 C C +V +++ + EI LL K C+ + V + C + V +Y P+++ + Sbjct: 403 CDICKMIVAYADKELEKNATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAE 462 Query: 268 LLEKKDVCTLMQACGASKKRAVG 200 +++ VCT + CGA+KK +G Sbjct: 463 MMDPTFVCTKLGVCGAAKKPLLG 485
>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 557 Score = 38.5 bits (88), Expect = 0.009 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGH--VQECKRMVLEYVPLIL--VN 278 C C +V + +KD +Q EIL L K C +H CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATQEEILHYLEKTCEWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 277 GEKLLEKKDVCTLMQAC 227 GE + +VC+ + C Sbjct: 123 GE-MSNPGEVCSALNLC 138 Score = 35.4 bits (80), Expect = 0.074 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284 K+ C C LV + ++ ++ EIL L K C+ + Q +C V EY PL+L Sbjct: 437 KNGGFCEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDDFVAEYEPLLL 496 Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197 ++++ VC+ + C ++ K +G+ Sbjct: 497 EILVEVMDPGFVCSKIGVCPSAYKLLLGT 525
>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 554 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284 K+ C C LV + ++ ++ EIL L K C+ + Q +C V EY PL+L Sbjct: 434 KNGGFCEVCKKLVIYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDEFVAEYEPLLL 493 Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197 ++++ VC+ + C ++ K +G+ Sbjct: 494 EILVEVMDPSFVCSKIGVCPSAYKLLLGT 522 Score = 36.6 bits (83), Expect = 0.033 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGH--VQECKRMVLEYVPLIL--VN 278 C C +V + +KD ++ EIL L K C +H CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATEEEILHYLEKTCAWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 277 GEKLLEKKDVCTLMQAC 227 GE + +VC+ + C Sbjct: 123 GE-MSNPGEVCSALNLC 138
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 37.0 bits (84), Expect = 0.025 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284 K C C LV + ++ ++ EIL L K C+ + Q +C + V EY P+++ Sbjct: 404 KDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLI 463 Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197 ++++ VC + AC ++ K +G+ Sbjct: 464 EILVEVMDPSFVCLKIGACPSAHKPLLGT 492 Score = 35.8 bits (81), Expect = 0.057 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = -2 Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHV-QECKRMVLEYVPLI 287 AKS+ C C LV V + + ++ EIL K C+K+ + +EC+ +V Y I Sbjct: 309 AKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSI 368 Query: 286 LVNGEKLLEKKDVCTLMQACGASKKRAV 203 L + + + VC+++ C ++ A+ Sbjct: 369 LSILLEEVSPELVCSMLHLCSGTRLPAL 396 Score = 34.7 bits (78), Expect = 0.13 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLIL--VN 278 C C +V +KD ++ EIL L K C+ + CK +V Y+P+IL + Sbjct: 63 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 122 Query: 277 GEKLLEKKDVCTLMQACGASKK 212 GE + +VC+ + C + +K Sbjct: 123 GE-MSRPGEVCSALNLCESLQK 143
>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta-glucosidase) (A Length = 525 Score = 36.2 bits (82), Expect = 0.043 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 460 KSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHVQ-ECKRMVLEYVPLIL 284 K C C LV + ++ ++ +IL L K C+ + + +C + V EY P+++ Sbjct: 405 KDGGFCEVCKKLVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCDQFVTEYEPVLI 464 Query: 283 VNGEKLLEKKDVCTLMQACGASKKRAVGS 197 ++++ VC + AC A+ K +G+ Sbjct: 465 EILVEVMDPSFVCLKIGACPAAHKPLLGA 493 Score = 32.7 bits (73), Expect = 0.48 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = -2 Query: 445 CAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKV--HGHVQECKRMVLEYVPLIL--VN 278 C C ++ + +KD ++ EIL L + C+ + CK +V Y+P+IL + Sbjct: 63 CDICKDVITAAGNLLKDNATEQEILMYLERTCDWLPKPNMSASCKEIVDSYLPVILDMIK 122 Query: 277 GEKLLEKKDVCTLMQACGASKK 212 G+ + +VC+ + C + +K Sbjct: 123 GQ-MSHPGEVCSALNLCESLQK 143 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = -2 Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECNKVHGHV-QECKRMVLEYVPLI 287 AK++ C C +V V + + ++ EIL L K C+K+ + ++C+ +V Y I Sbjct: 310 AKADIYCEVCEFVVKEVAKLIDNNRTEEEILHALDKVCSKLPTSLAEQCQEVVDTYGRSI 369 Query: 286 LVNGEKLLEKKDVCTLMQACGA 221 L + VC+++ C + Sbjct: 370 LSILLDEASPELVCSMLHLCSS 391
>NUD14_ARATH (Q9SZ63) Nudix hydrolase 14, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT14) Length = 309 Score = 32.7 bits (73), Expect = 0.48 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%) Frame = +2 Query: 161 SSSITPQSTIEERSNRPLLAGAT-GLHKSAY-----ILLLKELLAIDQDEGDVF*NHSLT 322 SSS+T T+ + N P+L AT G+ S + L + L + E + + S+T Sbjct: 40 SSSLTQSITLPSQPNEPVLVSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMT 99 Query: 323 LLHMTVNLVALLDEKLKYLKLRVRIF 400 L + + V + +++ +LK + IF Sbjct: 100 LKQVLIQGVDMFGKRIGFLKFKADIF 125
>GLRX1_YEAST (P25373) Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)| Length = 110 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -2 Query: 457 SESTCAFCHHLVDVVLSKMKDPDSQFEILQLL-IKECNKVHGHVQECKRMVLEYVPLILV 281 S++ C +CH ++ + K+K P S+ +LQL +KE + + E VP I + Sbjct: 23 SKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQ--RTVPNIYI 80 Query: 280 NGEKLLEKKDVCTLMQ 233 NG+ + D+ L + Sbjct: 81 NGKHIGGNDDLQELRE 96
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 31.2 bits (69), Expect = 1.4 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 20/119 (16%) Frame = +3 Query: 63 SIGTFQRTETSLYVQQSPHHPISTIPTSDVCFCHQASL-----RSPPSKNDP-----TAL 212 SI F+R LY +++PHHP+ H +++ SPP + P AL Sbjct: 419 SITAFRR---ELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRLPHALQKAAL 475 Query: 213 FLLAPQACIRVHTSFF---SRSFSPLTRMRGTYSR-------TILLHSCT*P*TLLHSL 359 LL P + + T FF +S P + T R +++L S + LLH L Sbjct: 476 LLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLSLSESSVLLHKL 534
>PSPB_MOUSE (P50405) Pulmonary surfactant-associated protein B precursor (SP-B)| (Pulmonary surfactant-associated proteolipid SPL(Phe)) Length = 377 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Frame = -2 Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECN--KVHGHVQECKRMVLEYVPL 290 A + C C +V ++ K+ Q I + L +EC+ + V C++++ Y+PL Sbjct: 62 AGANDLCQECEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLKLLVPRCRQVLDVYLPL 121 Query: 289 ILVNGEKLLEKKDVCTLMQAC 227 ++ + + K +C + C Sbjct: 122 VIDYFQSQINPKAICNHVGLC 142
>PSPB_RAT (P22355) Pulmonary surfactant-associated protein B precursor (SP-B)| (Pulmonary surfactant-associated proteolipid SPL(Phe)) Length = 376 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Frame = -2 Query: 463 AKSESTCAFCHHLVDVVLSKMKDPDSQFEILQLLIKECN--KVHGHVQECKRMVLEYVPL 290 A + C C +V ++ K+ Q I + L +EC+ + V C++++ Y+PL Sbjct: 61 AGANDLCQECEDIVHLLTKMTKEDAFQDTIRKFLEQECDILPLKLLVPRCRQVLDVYLPL 120 Query: 289 ILVNGEKLLEKKDVCTLMQAC 227 ++ + ++ K +C+ + C Sbjct: 121 VIDYFQGQIKPKAICSHVGLC 141
>JHD1_SCHPO (O94603) Putative JmjC domain-containing histone demethylation| protein 1 (EC 1.14.11.-) (Heterochromatin-destabilizing protein epe1) Length = 948 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = +1 Query: 109 NHLITLFPPFLQVMCVSVIKHHSA---VHHRRTIQPPS-SCWRH 228 N T+ PP L +CV ++ A HHRR+ + PS +C+ H Sbjct: 502 NSAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAKHPSCNCFSH 545
>VE1_COPV (Q89536) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 597 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 326 LHMTVNLVALLDEKLKYLKLRVRIFHF*EDY 418 L +T N+ DEK KYL+ R FHF +++ Sbjct: 511 LLITTNVNVCGDEKFKYLRSRCSFFHFPQEF 541
>TR11B_RAT (O08727) Tumor necrosis factor receptor superfamily member 11B| precursor (Osteoprotegerin) Length = 401 Score = 28.9 bits (63), Expect = 6.9 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 10/86 (11%) Frame = -2 Query: 373 LQLLIKECNKVHGHVQECKR---MVLEYV-------PLILVNGEKLLEKKDVCTLMQACG 224 LQ + +ECN+ H V EC+ + LE+ P + V E+ VC Sbjct: 90 LQTVKQECNRTHNRVCECEEGRYLELEFCLKHRSCPPGLGVLQAGTPERNTVC------- 142 Query: 223 ASKKRAVGSFFDGGLRSDA**QKHTS 146 KR FF G S A +KHT+ Sbjct: 143 ---KRCPDGFFSGETSSKAPCRKHTN 165
>PDXH_BDEBA (Q6MK45) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 196 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%) Frame = -1 Query: 299 RPPHPGQWREAP*E-------EGCMHSYASLWRQQEEGGW 201 RPPH G WR P E G +H ++++ E+GGW Sbjct: 151 RPPHWGGWRVIPTEIEFWFGLGGRLHE-RHIYQRTEDGGW 189
>DPHB_METAC (Q8TR14) Probable diphthine synthase (EC 2.1.1.98) (Diphthamide| biosynthesis methyltransferase) Length = 266 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = +2 Query: 116 SSPYFHHSYK*CVFLSSSITPQSTIEERSNRPLLAGATGLHKSAYILLLKELLAIDQDEG 295 S PY + S + + +S TP TI++ S GLH + L ID+D+G Sbjct: 133 SIPYPYESRRGAIIISE--TPYDTIKQNSE-------LGLHTMIF-------LDIDKDKG 176 Query: 296 DVF*NHSLTLL 328 + NH+L LL Sbjct: 177 YMTANHALELL 187
>ALS1_CANAL (P46590) Agglutinin-like protein 1 precursor| Length = 1260 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/73 (23%), Positives = 35/73 (47%) Frame = +3 Query: 93 SLYVQQSPHHPISTIPTSDVCFCHQASLRSPPSKNDPTALFLLAPQACIRVHTSFFSRSF 272 S+ +++ P+H ++T + ++ +PP D T + P + T ++S+SF Sbjct: 571 SVIIREPPNHTVTTTEYWSQSYATTTTVTAPPGGTD-TVIIREPPNHTVTT-TEYWSQSF 628 Query: 273 SPLTRMRGTYSRT 311 + T + G S T Sbjct: 629 ATTTTVTGPPSGT 641 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,730,403 Number of Sequences: 219361 Number of extensions: 1444000 Number of successful extensions: 3731 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3727 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
