Clone Name | rbah61o23 |
---|---|
Clone Library Name | barley_pub |
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 410 ttcttgtagccaccatcatagtcgtcggagct 441 |||||||||||||||||||||||||| ||||| Sbjct: 53751 ttcttgtagccaccatcatagtcgtctgagct 53782 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 227 ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 286 |||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| Sbjct: 53631 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 53690 Query: 287 tcctcggtgct 297 || ||||||| Sbjct: 53691 tcgccggtgct 53701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 410 ttcttgtagccaccatcatagtcgtcggagct 441 |||||||||||||||||||||||||| ||||| Sbjct: 20950560 ttcttgtagccaccatcatagtcgtctgagct 20950591 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 227 ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 286 |||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| Sbjct: 20950440 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 20950499 Query: 287 tcctcggtgct 297 || ||||||| Sbjct: 20950500 tcgccggtgct 20950510
>dbj|AK066084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M03, full insert sequence Length = 1261 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 410 ttcttgtagccaccatcatagtcgtcggagct 441 |||||||||||||||||||||||||| ||||| Sbjct: 590 ttcttgtagccaccatcatagtcgtctgagct 559 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 227 ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 286 |||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| Sbjct: 710 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 651 Query: 287 tcctcggtgct 297 || ||||||| Sbjct: 650 tcgccggtgct 640
>dbj|AK065331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M22, full insert sequence Length = 3861 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 410 ttcttgtagccaccatcatagtcgtcggagct 441 |||||||||||||||||||||||||| ||||| Sbjct: 3205 ttcttgtagccaccatcatagtcgtctgagct 3174 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 227 ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 286 |||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| Sbjct: 3325 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 3266 Query: 287 tcctcggtgct 297 || ||||||| Sbjct: 3265 tcgccggtgct 3255
>gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete sequence Length = 141050 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 attttgtctagtaatcatcagag 139 ||||||||||||||||||||||| Sbjct: 81091 attttgtctagtaatcatcagag 81113
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 117 attttgtctagtaatcatcagag 139 ||||||||||||||||||||||| Sbjct: 118338 attttgtctagtaatcatcagag 118316
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 117 attttgtctagtaatcatcagag 139 ||||||||||||||||||||||| Sbjct: 10477870 attttgtctagtaatcatcagag 10477848
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 168 cgtcggcgccggactcgttgtag 190 ||||||||||||||||||||||| Sbjct: 1239370 cgtcggcgccggactcgttgtag 1239348
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 117 attttgtctagtaatcatcagag 139 ||||||||||||||||||||||| Sbjct: 10483909 attttgtctagtaatcatcagag 10483887
>gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosome 14, complete sequence Length = 210128 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 225 gcttgttgtagccactgctgtcatag 250 ||||| |||||||||||||||||||| Sbjct: 191590 gcttgctgtagccactgctgtcatag 191565
>gb|AC124729.4| Mus musculus BAC clone RP23-479H9 from chromosome 14, complete sequence Length = 176086 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 225 gcttgttgtagccactgctgtcatag 250 ||||| |||||||||||||||||||| Sbjct: 19152 gcttgctgtagccactgctgtcatag 19127
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence Length = 205300 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 146440 ttcgccatagccggcatcggc 146420
>ref|NM_010585.2| Mus musculus inositol 1,4,5-triphosphate receptor 1 (Itpr1), mRNA Length = 9848 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ccactgctgtcatagtcatca 256 ||||||||||||||||||||| Sbjct: 2796 ccactgctgtcatagtcatca 2776
>gb|BC054120.1| Mus musculus integrator complex subunit 7, mRNA (cDNA clone MGC:59468 IMAGE:6506658), complete cds Length = 4206 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 129 ttcgccatagccggcatcggc 109
>ref|NM_178632.4| Mus musculus integrator complex subunit 7 (Ints7), mRNA Length = 4206 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 129 ttcgccatagccggcatcggc 109
>dbj|AK137477.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830108A05 product:inositol 1,4,5-triphosphate receptor 1, full insert sequence Length = 3806 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ccactgctgtcatagtcatca 256 ||||||||||||||||||||| Sbjct: 2820 ccactgctgtcatagtcatca 2800
>dbj|AK040344.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430088A22 product:hypothetical protein, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 170 ttcgccatagccggcatcggc 150
>dbj|AK052103.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230046C07 product:hypothetical ARM repeat structure containing protein, full insert sequence Length = 4001 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 148 ttcgccatagccggcatcggc 128
>dbj|AK034856.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430048M23 product:RIKEN cDNA 5930412E23 gene, full insert sequence Length = 4198 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 146 ttcgccatagccggcatcggc 126
>dbj|AK049015.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230091M20 product:inositol 1,4,5-triphosphate receptor 1, full insert sequence Length = 3510 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ccactgctgtcatagtcatca 256 ||||||||||||||||||||| Sbjct: 2432 ccactgctgtcatagtcatca 2412
>dbj|AK086462.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930030K15 product:hypothetical ARM repeat structure containing protein, full insert sequence Length = 3253 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 176 ttcgccatagccggcatcggc 156
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 cgtcggcgccggactcgttgtagcc 192 |||||||||||| |||||||||||| Sbjct: 1797172 cgtcggcgccggcctcgttgtagcc 1797196
>dbj|AK085362.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630016B11 product:hypothetical ARM repeat structure containing protein, full insert sequence Length = 3178 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 183 ttcgccatagccggcatcggc 163
>dbj|AK085336.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630013D23 product:hypothetical ARM repeat structure containing protein, full insert sequence Length = 3053 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 148 ttcgccatagccggcatcggc 128
>ref|XM_223075.3| PREDICTED: Rattus norvegicus similar to DKFZP434B168 protein (predicted) (LOC289382), mRNA Length = 3010 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ttcgccatagccggcatcggc 402 ||||||||||||||||||||| Sbjct: 157 ttcgccatagccggcatcggc 137
>emb|X15373.1|MMP400 Mouse cerebellum mRNA for P400 protein Length = 9848 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ccactgctgtcatagtcatca 256 ||||||||||||||||||||| Sbjct: 2796 ccactgctgtcatagtcatca 2776
>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence Length = 214292 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ttttgtctagtaatcatcag 137 |||||||||||||||||||| Sbjct: 94330 ttttgtctagtaatcatcag 94349
>ref|XM_387690.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07514.1) partial mRNA Length = 1506 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gcggccattgtcgtcaccag 218 |||||||||||||||||||| Sbjct: 39 gcggccattgtcgtcaccag 58
>gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, complete sequence Length = 203589 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gtgctgggcttgttgtagcc 237 |||||||||||||||||||| Sbjct: 93139 gtgctgggcttgttgtagcc 93158
>gb|AC166936.1| Mus musculus BAC clone RP24-244M17 from chromosome 12, complete sequence Length = 167608 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ccagtgctgggcttgttgtagcca 238 ||||||||||||||| |||||||| Sbjct: 10125 ccagtgctgggcttggtgtagcca 10148
>gb|AC154318.3| Mus musculus BAC clone RP23-316D19 from chromosome 12, complete sequence Length = 176391 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ccagtgctgggcttgttgtagcca 238 ||||||||||||||| |||||||| Sbjct: 110651 ccagtgctgggcttggtgtagcca 110674
>ref|NM_206505.1| Drosophila melanogaster CG18212-RB, transcript variant B (CG18212), mRNA Length = 3284 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2356 cagtagcagtagcaaccaca 2375
>ref|NM_169771.1| Drosophila melanogaster CG18212-RF, transcript variant F (CG18212), mRNA Length = 3286 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2358 cagtagcagtagcaaccaca 2377
>ref|NM_169770.2| Drosophila melanogaster CG18212-RE, transcript variant E (CG18212), mRNA Length = 3341 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2413 cagtagcagtagcaaccaca 2432
>ref|NM_169769.1| Drosophila melanogaster CG18212-RD, transcript variant D (CG18212), mRNA Length = 3282 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2354 cagtagcagtagcaaccaca 2373
>ref|NM_169768.1| Drosophila melanogaster CG18212-RA, transcript variant A (CG18212), mRNA Length = 3374 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2446 cagtagcagtagcaaccaca 2465
>ref|NM_142388.2| Drosophila melanogaster CG18212-RG, transcript variant G (CG18212), mRNA Length = 3475 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2547 cagtagcagtagcaaccaca 2566
>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence Length = 149148 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 atttactccagattacataa 34 |||||||||||||||||||| Sbjct: 142261 atttactccagattacataa 142280
>gb|AC105190.2| Homo sapiens chromosome 11, clone RP11-116O9, complete sequence Length = 152837 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 atttactccagattacataa 34 |||||||||||||||||||| Sbjct: 15623 atttactccagattacataa 15642
>gb|AY061628.1| Drosophila melanogaster SD10611 full length cDNA Length = 2788 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 1845 cagtagcagtagcaaccaca 1864
>dbj|AK171379.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730112I03 product:hypothetical protein, full insert sequence Length = 4726 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gtgctgggcttgttgtagcc 237 |||||||||||||||||||| Sbjct: 4287 gtgctgggcttgttgtagcc 4306
>gb|AY051768.1| Drosophila melanogaster LD29525 full length cDNA Length = 3003 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 2547 cagtagcagtagcaaccaca 2566
>gb|AC009742.4|AC009742 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR21K03, complete sequence Length = 178100 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 109243 cagtagcagtagcaaccaca 109224
>gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR14A01, complete sequence Length = 176735 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 3124 cagtagcagtagcaaccaca 3105
>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20 Length = 74452 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 tcatcggtgctagatttggt 624 |||||||||||||||||||| Sbjct: 18982 tcatcggtgctagatttggt 19001
>dbj|AK107236.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E12, full insert sequence Length = 1700 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 tagcaccgcaaacacactcgcttt 109 ||||||||||||||||||| |||| Sbjct: 1631 tagcaccgcaaacacactctcttt 1654
>gb|AE003718.3| Drosophila melanogaster chromosome 3R, section 56 of 118 of the complete sequence Length = 253101 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cagtagcagtagcaaccaca 75 |||||||||||||||||||| Sbjct: 209387 cagtagcagtagcaaccaca 209368
>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete sequence Length = 259487 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 tgtaactgccactgccattg 601 |||||||||||||||||||| Sbjct: 138080 tgtaactgccactgccattg 138099
>dbj|D14400.1|XELIP3R X. laevis mRNA for inositol 1,4,5-trisphosphate receptor, complete cds Length = 8939 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccactgctgtcatagtcatc 255 |||||||||||||||||||| Sbjct: 2571 ccactgctgtcatagtcatc 2552 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,494,549 Number of Sequences: 3902068 Number of extensions: 4494549 Number of successful extensions: 77353 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77104 Number of HSP's gapped (non-prelim): 249 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)