Clone Name | rbah61o21 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009218.1| Triticum aestivum clone wle1n.pk0060.c11:fis, full insert mRNA sequence Length = 1940 Score = 232 bits (117), Expect = 1e-57 Identities = 279/333 (83%) Strand = Plus / Minus Query: 250 catcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctggt 309 |||||| ||||||| ||| ||||||||||||||| |||||| | ||||| | ||| || Sbjct: 1489 catcgcgtccacgagctttgaccatttcgtgcggagggtgatgatcaccatcacgcttgt 1430 Query: 310 ctggcaagtcagcccgcagatcagacccgaccataaacccttggtgtagaagttgagctt 369 |||||| | |||||| ||| | |||| ||||||| || | ||||| ||||||||||| Sbjct: 1429 ctggcatgccagcccagtgattaaacccaaccataagccgtgagtgtacaagttgagctt 1370 Query: 370 gaaggcaaagaggatggccaacggcatgccgatgaagtagaacgccacaaggttcgttag 429 |||||| ||||| ||||||| ||||||||| |||||| ||||||| ||||| || Sbjct: 1369 gaaggccaagagaatggccaccggcatgccagccaagtagtacgccaccaggttggtggt 1310 Query: 430 cgccgccaggtgctgccatccgcagcccctcgccacccctgacagcacgccctgcgcgga 489 ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||| Sbjct: 1309 cgccgccaggtgctgccatccacagccccgcgcaacccctgacagcacgccctgcgtgga 1250 Query: 490 gtcgagcacgatcgaaatcatcatgagcggggtgatggccgcaaattctgccgcgatcac 549 ||||||||| || || ||||||| |||||||||||||||||| || | |||||| |||| Sbjct: 1249 gtcgagcacaatagagatcatcaggagcggggtgatggccgcgaactttgccgcaatcat 1190 Query: 550 ctcgctcccagtgaagagcctcgcccaaaggcc 582 | ||||||| |||||||| |||||||| ||||| Sbjct: 1189 cgcgctccccgtgaagaggctcgcccagaggcc 1157
>ref|XM_478265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 200 bits (101), Expect = 4e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 249 gcatcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctgg 308 ||||||| |||||||||||||||||||| || || ||||||||||||| |||||||| || Sbjct: 1420 gcatcgcgtccacgatcttggaccatttggttcgtgcggtgatcaccatcagcgtgcagg 1361 Query: 309 tctggcaagtcagcccgcagatcagacccgaccataaacccttggtgtagaagttgagct 368 ||||||| |||||||||||||||| |||| |||||| ||||||||||| | ||||||| Sbjct: 1360 tctggcatgtcagcccgcagatcaaacccatccataatcccttggtgtaccacttgagct 1301 Query: 369 tgaaggcaaagaggatggccaacggcatgccgatgaagtagaacgccacaaggttcgtta 428 ||||||| |||| ||||| | |||||||||||||| |||||| || || ||||| || | Sbjct: 1300 tgaaggcgaagaagatggagagcggcatgccgatgacgtagaaggcgacgaggttggtca 1241 Query: 429 gcgccgccaggtgctgccatccgcagcccctcgccacccctgacagcacgccctgcgcgg 488 || || ||||||||||| ||||||||||| || || || || || || |||||||||| Sbjct: 1240 cggcggcgaggtgctgccagccgcagcccctggcgacgccggagaggaccccctgcgcgg 1181 Query: 489 agtcgagca 497 ||||||||| Sbjct: 1180 agtcgagca 1172
>dbj|AK120682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163C05, full insert sequence Length = 1623 Score = 200 bits (101), Expect = 4e-48 Identities = 212/249 (85%) Strand = Plus / Minus Query: 249 gcatcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctgg 308 ||||||| |||||||||||||||||||| || || ||||||||||||| |||||||| || Sbjct: 1516 gcatcgcgtccacgatcttggaccatttggttcgtgcggtgatcaccatcagcgtgcagg 1457 Query: 309 tctggcaagtcagcccgcagatcagacccgaccataaacccttggtgtagaagttgagct 368 ||||||| |||||||||||||||| |||| |||||| ||||||||||| | ||||||| Sbjct: 1456 tctggcatgtcagcccgcagatcaaacccatccataatcccttggtgtaccacttgagct 1397 Query: 369 tgaaggcaaagaggatggccaacggcatgccgatgaagtagaacgccacaaggttcgtta 428 ||||||| |||| ||||| | |||||||||||||| |||||| || || ||||| || | Sbjct: 1396 tgaaggcgaagaagatggagagcggcatgccgatgacgtagaaggcgacgaggttggtca 1337 Query: 429 gcgccgccaggtgctgccatccgcagcccctcgccacccctgacagcacgccctgcgcgg 488 || || ||||||||||| ||||||||||| || || || || || || |||||||||| Sbjct: 1336 cggcggcgaggtgctgccagccgcagcccctggcgacgccggagaggaccccctgcgcgg 1277 Query: 489 agtcgagca 497 ||||||||| Sbjct: 1276 agtcgagca 1268
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 249 gcatcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctgg 308 ||||||| |||||||||||||||||||| || || ||||||||||||| |||||||| || Sbjct: 18903344 gcatcgcgtccacgatcttggaccatttggttcgtgcggtgatcaccatcagcgtgcagg 18903403 Query: 309 tctggcaagtcagcccgcagatcagacccgaccataaaccct 350 ||||||| |||||||||||||||| |||| |||||| |||| Sbjct: 18903404 tctggcatgtcagcccgcagatcaaacccatccataatccct 18903445 Score = 91.7 bits (46), Expect = 3e-15 Identities = 124/150 (82%) Strand = Plus / Plus Query: 348 ccttggtgtagaagttgagcttgaaggcaaagaggatggccaacggcatgccgatgaagt 407 |||||||||| | |||||||||||||| |||| ||||| | |||||||||||||| || Sbjct: 18903546 ccttggtgtaccacttgagcttgaaggcgaagaagatggagagcggcatgccgatgacgt 18903605 Query: 408 agaacgccacaaggttcgttagcgccgccaggtgctgccatccgcagcccctcgccaccc 467 |||| || || ||||| || | || || ||||||||||| ||||||||||| || || | Sbjct: 18903606 agaaggcgacgaggttggtcacggcggcgaggtgctgccagccgcagcccctggcgacgc 18903665 Query: 468 ctgacagcacgccctgcgcggagtcgagca 497 | || || || ||||||||||||||||||| Sbjct: 18903666 cggagaggaccccctgcgcggagtcgagca 18903695
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 249 gcatcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctgg 308 ||||||| |||||||||||||||||||| || || ||||||||||||| |||||||| || Sbjct: 5329 gcatcgcgtccacgatcttggaccatttggttcgtgcggtgatcaccatcagcgtgcagg 5388 Query: 309 tctggcaagtcagcccgcagatcagacccgaccataaaccct 350 ||||||| |||||||||||||||| |||| |||||| |||| Sbjct: 5389 tctggcatgtcagcccgcagatcaaacccatccataatccct 5430 Score = 91.7 bits (46), Expect = 3e-15 Identities = 124/150 (82%) Strand = Plus / Plus Query: 348 ccttggtgtagaagttgagcttgaaggcaaagaggatggccaacggcatgccgatgaagt 407 |||||||||| | |||||||||||||| |||| ||||| | |||||||||||||| || Sbjct: 5531 ccttggtgtaccacttgagcttgaaggcgaagaagatggagagcggcatgccgatgacgt 5590 Query: 408 agaacgccacaaggttcgttagcgccgccaggtgctgccatccgcagcccctcgccaccc 467 |||| || || ||||| || | || || ||||||||||| ||||||||||| || || | Sbjct: 5591 agaaggcgacgaggttggtcacggcggcgaggtgctgccagccgcagcccctggcgacgc 5650 Query: 468 ctgacagcacgccctgcgcggagtcgagca 497 | || || || ||||||||||||||||||| Sbjct: 5651 cggagaggaccccctgcgcggagtcgagca 5680
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 249 gcatcgcatccacgatcttggaccatttcgtgcgggcggtgatcaccaccagcgtgctgg 308 ||||||| |||||||||||||||||||| || || ||||||||||||| |||||||| || Sbjct: 103530 gcatcgcgtccacgatcttggaccatttggttcgtgcggtgatcaccatcagcgtgcagg 103589 Query: 309 tctggcaagtcagcccgcagatcagacccgaccataaaccct 350 ||||||| |||||||||||||||| |||| |||||| |||| Sbjct: 103590 tctggcatgtcagcccgcagatcaaacccatccataatccct 103631 Score = 91.7 bits (46), Expect = 3e-15 Identities = 124/150 (82%) Strand = Plus / Plus Query: 348 ccttggtgtagaagttgagcttgaaggcaaagaggatggccaacggcatgccgatgaagt 407 |||||||||| | |||||||||||||| |||| ||||| | |||||||||||||| || Sbjct: 103732 ccttggtgtaccacttgagcttgaaggcgaagaagatggagagcggcatgccgatgacgt 103791 Query: 408 agaacgccacaaggttcgttagcgccgccaggtgctgccatccgcagcccctcgccaccc 467 |||| || || ||||| || | || || ||||||||||| ||||||||||| || || | Sbjct: 103792 agaaggcgacgaggttggtcacggcggcgaggtgctgccagccgcagcccctggcgacgc 103851 Query: 468 ctgacagcacgccctgcgcggagtcgagca 497 | || || || ||||||||||||||||||| Sbjct: 103852 cggagaggaccccctgcgcggagtcgagca 103881
>gb|AY104022.1| Zea mays PCO087777 mRNA sequence Length = 622 Score = 58.0 bits (29), Expect = 4e-05 Identities = 98/121 (80%) Strand = Plus / Minus Query: 380 aggatggccaacggcatgccgatgaagtagaacgccacaaggttcgttagcgccgccagg 439 |||||||| | ||||| |||||||| ||||| ||||| ||||| || |||||||||| Sbjct: 268 aggatggcgagcggcaagccgatgacatagaaggccaccaggttggtccacgccgccagg 209 Query: 440 tgctgccatccgcagcccctcgccacccctgacagcacgccctgcgcggagtcgagcacg 499 |||||||| | ||||||||| || || || | || || ||||||| |||||| |||||| Sbjct: 208 tgctgccacctgcagcccctggcgacgccgcagagtaccccctgcgtggagtccagcacg 149 Query: 500 a 500 | Sbjct: 148 a 148
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 ggcggtgatcaccaccagcgt 303 ||||||||||||||||||||| Sbjct: 1406526 ggcggtgatcaccaccagcgt 1406546 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 ctcgctcccagtgaagagcc 569 |||||||||||||||||||| Sbjct: 1778128 ctcgctcccagtgaagagcc 1778109
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tgcgggcggtgatcaccacc 298 |||||||||||||||||||| Sbjct: 4801485 tgcgggcggtgatcaccacc 4801466
>gb|AC102873.10| Mus musculus chromosome 17, clone RP24-536C15, complete sequence Length = 155210 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggtcaaaaagagatatagct 121 |||||||||||||||||||| Sbjct: 152361 ggtcaaaaagagatatagct 152380
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 ccaggtgctgccatccgcagcccc 458 ||||||||||||||||||| |||| Sbjct: 37398 ccaggtgctgccatccgcaacccc 37375
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgacatagttgtccttctct 244 |||||||||||||||||||| Sbjct: 785656 cgacatagttgtccttctct 785637
>gb|AC145209.2| Homo sapiens chromosome 17, clone XXfos-85688H6, complete sequence Length = 41001 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gccgccaggtgctgccatcc 450 |||||||||||||||||||| Sbjct: 18062 gccgccaggtgctgccatcc 18043
>gb|AC122372.4| Mus musculus BAC clone RP23-463P4 from chromosome 10, complete sequence Length = 183391 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ggttactctctgtcattaca 61 |||||||||||||||||||| Sbjct: 31554 ggttactctctgtcattaca 31535
>emb|AL365356.13| Human DNA sequence from clone RP11-336A10 on chromosome 10 Contains the ASB13 gene for ankyrin repeat and SOCS box-containing 13, the 5' end of gene FLJ20360 (KIAA2006 FLJ34073 FLJ12904 FLJ23361 FLJ21109), three novel genes, a ribosomal protein L23a (RPL23A) pseudogene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 167676 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 cagcacgccctgcgcggagt 491 |||||||||||||||||||| Sbjct: 97662 cagcacgccctgcgcggagt 97681
>gb|L47745.1|PIAEMB25R Picea glauca albumin-like protein (EMB25) mRNA, complete cds Length = 714 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 acaaaaccccgtacatacaa 192 |||||||||||||||||||| Sbjct: 612 acaaaaccccgtacatacaa 593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 ccaggtgctgccatccgcagcccc 458 ||||||||||||||||||| |||| Sbjct: 27324941 ccaggtgctgccatccgcaacccc 27324918
>gb|AF282558.2|AF282558 Homo sapiens clone 17qtel_c1t7 sequence Length = 626 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gccgccaggtgctgccatcc 450 |||||||||||||||||||| Sbjct: 443 gccgccaggtgctgccatcc 462
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 ctgccgcgatcacctcgctc 556 |||||||||||||||||||| Sbjct: 5814387 ctgccgcgatcacctcgctc 5814368
>emb|AJ486859.1|AAN486859 Anguilla anguilla mRNA for putative sodium-potassium-chloride cotransporter (nkcc1b gene) Length = 3455 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 gatgcccagaagcaggatga 609 |||||||||||||||||||| Sbjct: 1038 gatgcccagaagcaggatga 1019
>dbj|AK105402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D07, full insert sequence Length = 2889 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 ccaggtgctgccatccgcagcccc 458 ||||||||||||||||||| |||| Sbjct: 2232 ccaggtgctgccatccgcaacccc 2209
>dbj|AK073902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I17, full insert sequence Length = 2429 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 ccaggtgctgccatccgcagcccc 458 ||||||||||||||||||| |||| Sbjct: 1884 ccaggtgctgccatccgcaacccc 1861
>emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chromosome 17, complete sequence Length = 236078 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ggtcaaaaagagatatagct 121 |||||||||||||||||||| Sbjct: 59736 ggtcaaaaagagatatagct 59717
>gb|AC139099.2| Homo sapiens chromosome 17, clone G549, complete sequence Length = 125104 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gccgccaggtgctgccatcc 450 |||||||||||||||||||| Sbjct: 67019 gccgccaggtgctgccatcc 67038
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete sequence Length = 203992 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 cccagaagcaggatgaagga 613 |||||||||||||||||||| Sbjct: 109209 cccagaagcaggatgaagga 109228 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,961,367 Number of Sequences: 3902068 Number of extensions: 3961367 Number of successful extensions: 67496 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67266 Number of HSP's gapped (non-prelim): 228 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)