>P60_LISMO (P21171) Protein p60 precursor (Invasion-associated protein)|
          Length = 484

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -2

Query: 486 TINPATPPPAEVKSDAPAAE---ATKATENPADNAAHKDDQGNAEEQSTA 346
           T N ATP  AEVK++APAAE   A    EN   N A  + +  A +Q TA
Sbjct: 247 TANTATPK-AEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETATQQQTA 295

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 561 ENGLAVEFIVXXXXXXXXXXXXADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHK 382
           ++GL V  ++              S+  P+TP PA   S  PA+ AT A   P+ + +  
Sbjct: 73  KDGLTVHLVIKTPQKAQDPAAATASS--PSTPDPASAPSTTPASPATPA--QPSTSGSAS 128

Query: 381 DDQGNAEEQSTASADNNG 328
            D G+   +S+    + G
Sbjct: 129 SDAGSGSRRSSGGGPSPG 146

>NFL_BOVIN (P02548) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L) (Micro
           glutamic acid-rich protein)
          Length = 554

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/96 (27%), Positives = 33/96 (34%)
 Frame = -2

Query: 624 EHVEDEKPAEYEVAAVEGEKSENGLAVEFIVXXXXXXXXXXXXADSTINPATPPPAEVKS 445
           E  +DE P+E E    E EK E     E                ++    A     E   
Sbjct: 464 EEAKDEPPSEGEAEEEEKEKEEAEAEAEAEAEAEAEEEEGAQEEEAAKEDAEEAKEEEGG 523

Query: 444 DAPAAEATKATENPADNAAHKDDQGNAEEQSTASAD 337
           +   AE TK  E        K D+G  EEQ+T   D
Sbjct: 524 EGEEAEETKEAEEE-----EKKDEGAGEEQATKKKD 554

>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 22/67 (32%), Positives = 27/67 (40%)
 Frame = -1

Query: 574 GREK*KRPGSRIHSATSSIFXXXXXXXXXXHQSSDPSSSGGEVRCSSGRGNKSHRESSRQ 395
           GR+K K+  S    ++SS              SS  SSSG     SS  G+ S   SS  
Sbjct: 35  GRDKAKKRRSGSSGSSSSSHSRSSSSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSS 94

Query: 394 RCSQG*P 374
             S G P
Sbjct: 95  SSSSGSP 101

>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 139 AEKRSLQLRALSG*TRLQSSKQ--MRDPILSTQRPSLFPVSPRLACRPGNLPSGA 297
           AE ++  LR      RL++S Q  + DP L   + S  P SPR A RP + PS +
Sbjct: 600 AEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSAS 654

>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 477 PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQS 352
           P TPPPA  ++  P A+A  A   P  +A  +D +  A  Q+
Sbjct: 163 PVTPPPAAPQAPRPVAQAPVAPSAPRQDAPRQDTRAAAPGQT 204

>NUPL2_XENTR (Q5FVW4) Nucleoporin-like 2|
          Length = 449

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 491 SASSFFSSEDAGG--GTMNSTARP-FSLFSPSTAATSYSAGFSSS 616
           S S F ++ +     GT NS A P F + S STAAT +  GFS++
Sbjct: 310 STSGFGNASNTASFQGTANSAAAPAFGVASSSTAATGFGGGFSTT 354

>ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein Z13) (Fragment)
          Length = 706

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -2

Query: 492 DSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTASADNNGQIHPG 313
           DS      PP  E K +AP A A +  E PA+    K  +G AE Q     DN  +  P 
Sbjct: 40  DSDKPKQVPPNQEGKEEAPVATAAQPKE-PAEQPDAK--EGPAEGQQPGGVDNAAEASPA 96

Query: 312 A 310
           A
Sbjct: 97  A 97

>IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Protein UL69)|
          Length = 841

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
 Frame = -2

Query: 621 HVEDEKPAEYEVAAVEGEKSENGLAVEFIVXXXXXXXXXXXXADSTINPATPPPAEVKSD 442
           H   + P+      V G+    G +                  +S+   A PPP    S 
Sbjct: 564 HHSSKSPSTVSSTTVHGQNGARGDSAPSRKSQQSQQQPETTSKESSKTAAMPPPPSPCSP 623

Query: 441 APAAEATKATENPADNAAHKD----DQGNAE-EQSTASADNNGQIHPGASTV 301
           +PA+   + +++P+ +    D    +  +AE E +TA  ++ G   PG  +V
Sbjct: 624 SPASRERRPSKSPSSSPRPHDPPSGEPADAEKELATAGDEDEGVRSPGECSV 675

>SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialoprotein II) (BSP|
           II) (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 317

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
 Frame = -2

Query: 609 EKPAEYEVAAVEGEKSENGLAVEFIVXXXXXXXXXXXXADSTINPATPPP--AEVKSDAP 436
           E+  E E  + EGE +E     E                     P T     A ++    
Sbjct: 76  EEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATPGTGYTGLAAIQLPKK 135

Query: 435 AAEAT-KAT-ENPADNAAHKDDQGNAEEQSTASADNNGQIHPGAST 304
           A + T KAT E  +D    ++++GN  E+S A  D N Q   G ST
Sbjct: 136 AGDITNKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTST 181

>MED9_YEAST (P33308) RNA polymerase II mediator complex subunit 9 (Chromosome|
           segregation protein 2)
          Length = 149

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 462 PAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQ--STASADNNGQIHP 316
           P     D P AEATK   + A+N   KD   N + +  ST S  +NG+  P
Sbjct: 17  PTNPTLDKPNAEATKEEFSSAENRDEKDYLTNQQPKNLSTPSTSSNGEFIP 67

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 477 PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTASADNNGQIH 319
           P  PPP +     P A A  A  +PA  AAH  D+       +A AD + +++
Sbjct: 170 PVAPPPTQAPVAEPGAHAAAAAPHPA--AAHGRDEEAPSAAKSAVADRSIRVN 220

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 492 DSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTAS-ADNNGQIHP 316
           D ++  A   P   K +    +  K  ++  +  A K D+   EE ++AS A  NG   P
Sbjct: 74  DVSMPDAAAEPVADKKEKKEKKDKKEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTP 133

Query: 315 GAST 304
            AST
Sbjct: 134 AAST 137

>ARGJ_CHRVO (Q7P0T8) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 462 PAEVKSD-APAAEATKATENPADNAAHKDDQGNAEEQSTASADNNGQIHPGASTV 301
           PA  ++D A AAEA   T+  A  A+ + D G      T  A  +G IHP  +T+
Sbjct: 136 PALRQADWAEAAEAIMTTDTLAKAASRRLDIGGKAVTVTGIAKGSGMIHPNMATM 190

>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
 Frame = -2

Query: 615 EDEKPAEYEVAAVEGEKSENGLAVEFIVXXXXXXXXXXXXADSTINPATPPPAEVKSDAP 436
           E E  AE   A  E   +E   A E               A+       P   E  ++ P
Sbjct: 103 EAEPAAEEAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEPEAAAEEP 162

Query: 435 AAEATKATEN--PADNAAHKDDQGNAEEQSTASADN 334
           AAE  +ATE   PA+ AA ++       +  A+AD+
Sbjct: 163 AAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADH 198



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = -2

Query: 609 EKPAEYEVAAVEGEKSENGLAVEFIVXXXXXXXXXXXXADSTINPATPPPAEVKS-DAPA 433
           E+PA  E AA E   +E   A E                 +   PA   PAE  + DAPA
Sbjct: 87  EEPAADEPAATEEPDAEAEPAAE---EAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPA 143

Query: 432 AEATKATENPADNAAHKDDQGNAEEQST 349
            EA  A E PA+  A  ++    E ++T
Sbjct: 144 EEAA-AEEAPAEPEAAAEEPAAEEPEAT 170

>HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 46

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 249 RFASPRLSS-RQPTLRCISRWKHPDGSVRCCRRSRWIVLRRYPGHPCEQR 395
           R  SP  S  R+P  RC  R       +RCCRR R +  RRY    C ++
Sbjct: 4   RCRSPSQSRCRRPRRRCRRR-------IRCCRRQRRVCCRRYTTTRCARQ 46

>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 347

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -2

Query: 489 STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAE---EQSTASADNNGQIH 319
           S+  PAT       +DA A+ +T ++EN   N A  + +GN E    Q+     NN  + 
Sbjct: 171 SSSTPATTTTTTTTNDAEASTST-SSENSNHNNAETNPKGNGEVQPNQANKETQNNSNVQ 229

Query: 318 PGAST 304
             + T
Sbjct: 230 QDSQT 234

>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = +3

Query: 81  RHKPACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVPRFAS 260
           R     RP  P     C +CG     +  AVG     V      + P HT ++ VP    
Sbjct: 4   RRMLCARPWGP-SCVVCALCGA-LAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPE 61

Query: 261 PRLSSRQPTLRCISRWKHPDGSV 329
           PR    QP+    +    P G+V
Sbjct: 62  PRAEGEQPSPLVPTALPVPGGAV 84

>RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)|
           (ADP-heptose--LPS heptosyltransferase II)
          Length = 348

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 272 VQATYPQVHFTVEAPGWICPLLSALAVDCSSALP 373
           +QA YPQ    V AP W  PLLS +  + + A+P
Sbjct: 24  LQARYPQAIIDVMAPAWCRPLLSRMP-EVNEAIP 56

>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 468 PPPAEVKSDAPAAEATKATENPAD 397
           PPP E  + APAAE   A E+P D
Sbjct: 62  PPPKEEHAPAPAAETPPAPEHPPD 85

>L100_ADEG1 (Q64760) Late 100 kDa protein|
          Length = 984

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
 Frame = -2

Query: 477 PATPPPAEVKSDAPAAEATKAT-----ENPADNAAHKD----DQGNAEEQ 355
           P TP   E + D+P++E T +T     +  A N +H D    D G+A E+
Sbjct: 172 PGTPVDEEPQDDSPSSEETASTVIEEAQTSASNDSHDDDTHRDDGSASEE 221

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
 Frame = -2

Query: 486  TINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNA----EEQSTASADNNGQIH 319
            T  P   PPA     +P+ E  K +         +++ G A     E+ TAS    G+  
Sbjct: 1124 TQEPPGAPPA-----SPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKD 1178

Query: 318  PGASTVKCT*G*VAWTTGEA 259
            PG +          WT GEA
Sbjct: 1179 PGPAAPSLAKQEAEWTAGEA 1198

>SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing Ras-interactor|
            protein)
          Length = 1790

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 477  PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTAS---ADNNGQIHPGAS 307
            P+TP P +     P  E T AT N + + +     G+   +S A     + +GQ+ P A 
Sbjct: 976  PSTPTPTQQSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNLSGQVPPVAM 1035

Query: 306  TVKCT 292
            T   T
Sbjct: 1036 TKSMT 1040

>Y2340_MYCBO (P64994) Hypothetical protein Mb2340c|
          Length = 284

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 262 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 89
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 88  LCR 80
           +C+
Sbjct: 171 VCK 173

>Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376|
          Length = 284

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 262 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 89
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 88  LCR 80
           +C+
Sbjct: 171 VCK 173

>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)|
           (Sialophorin) (Ly-48) (B cell differentiation antigen
           LP-3) (CD43 antigen)
          Length = 395

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -2

Query: 468 PPPAEVKSDAPAAEATKATENPADN-------AAHKDDQGNAEEQSTASADNNGQIHPGA 310
           P P+ V SD P   A   T+ PA N       A+    +G +   +T +  +N    P  
Sbjct: 115 PEPSNVASDPPVTAANPVTDGPAANPVTDGTAASTSISKGTSAPPTTVTTSSNETSGPSV 174

Query: 309 ST 304
           +T
Sbjct: 175 AT 176

>MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 246

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 474 ATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTASADNNG 328
           A P PA+  S  P  E    + +PA+ A    ++G+ EE +T     NG
Sbjct: 21  AAPGPAQTLSLLPGLEVVTGSTHPAEAA---PEEGSLEEAATPMPQGNG 66

>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 286

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -2

Query: 489 STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNA----EEQSTASADNNGQI 322
           S   PAT       +DA A+ +T ++ENP  N A  + +GN       Q+     NN  +
Sbjct: 109 SPSTPATTTTTTTTNDAEASTST-SSENPNHNNAKTNPKGNGGVQKPNQANKETQNNSNV 167

Query: 321 HPGAST 304
              + T
Sbjct: 168 QQDSQT 173

>DACH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1)|
          Length = 751

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +2

Query: 461 GGGVAGLMVLSASSFFSSEDAGGGTMNSTARPFSLFSPSTAATSYSAGFSSSTCS 625
           GGG      L+A S      AGGG  +ST    S  S S++++S S+  SSS+ S
Sbjct: 94  GGGSNCNPSLAAGSSGGGVSAGGGGASSTPITASTGSSSSSSSSSSSSSSSSSSS 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,287,475
Number of Sequences: 219361
Number of extensions: 1847963
Number of successful extensions: 7327
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7300
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)