ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62d14 |
|---|---|
| Clone Library Name | barley_pub |
>MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) (Alpha isomyosin) (Fragment) Length = 465 Score = 32.7 bits (73), Expect = 0.90 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 304 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 340
>MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (Fragment)| Length = 1102 Score = 32.7 bits (73), Expect = 0.90 Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDLARE+ Sbjct: 273 KIKELQARIEELEEELEAERAARAKVEKQRSDLAREL 309
>MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1939 Score = 32.7 bits (73), Expect = 0.90 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 1145
>MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1938 Score = 32.7 bits (73), Expect = 0.90 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 1145
>MYH6_RAT (P02563) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1938 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ +++AR+ L+E+++ +R A+ KVE RSDL RE+ Sbjct: 1108 KLKENQARIEELEEELEAERTARAKVEKLRSDLTREL 1144
>MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1939 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ +++AR+ L+E+++ +R A+ KVE RSDL RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLTREL 1145
>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle| Length = 1935 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+I+ +R A+ KVE R+DL+RE+ Sbjct: 1108 KIKELQARIEELEEEIEAERAARAKVEKQRADLSREL 1144
>MYH7_RABIT (P04461) Myosin heavy chain, cardiac muscle beta isoform| (MyHC-beta) (Beta isomyosin) (Fragment) Length = 736 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 671 KLKELQARIEELEEELEAERTARAKVEKLRSDLSREL 707
>MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1107 KLKELQARIEELEEELEAERTARAKVEKLRSDLSREL 1143
>MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1107 KLKELQARIEELEEELEAERTARAKVEKLRSDLSREL 1143
>MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1107 KLKELQARIEELEEELEAERTARAKVEKLRSDLSREL 1143
>MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1934 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1106 KLKELQARIEELEEELEAERTARAKVEKLRSDLSREL 1142
>MYSP_BOOMI (Q86RN8) Paramyosin| Length = 873 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = -2 Query: 508 GGPGMFKREFGK------MDDDKARLLDEKIKKQRVAQMKVELHRSDLAREVTKAVMDLI 347 GG G E+G +DK RLL E ++ +R + ++E +SDL T +M L Sbjct: 14 GGAGDISIEYGTDLGALTRLEDKLRLLQEDLESERELRQRIEREKSDL----TVQLMQLS 69 Query: 346 D*CESDE 326 D E E Sbjct: 70 DRLEEAE 76
>RRMJ_SILPO (Q5LSB0) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 233 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = -2 Query: 553 MCELYPYLAEXVRKLGGPGMFKREFGKMDDDKARLLDEKIKKQRVAQMKVELHRSDLARE 374 +CE YLA V + GG + K G + D +LL +K K VA +K RSD + + Sbjct: 167 LCEAAAYLAFDVLEEGGTFVAKVLAGGAEGDLQKLLKQKFTK--VANVKPPASRSDSSEK 224 Query: 373 VTKA 362 A Sbjct: 225 FVVA 228
>MYSP_CAEEL (P10567) Paramyosin| Length = 882 Score = 30.0 bits (66), Expect = 5.8 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Frame = -2 Query: 574 EPKGFEEMCELYPYLAEXVR-KLGGPGMFKREFGKMD----------DDKARLLDEKIKK 428 EP E EL L + K F FG M +DK RLL E ++ Sbjct: 8 EPLELMERMELQELLIVSLESKSPSQAAFGAPFGSMSVADLGSLTRLEDKIRLLQEDLES 67 Query: 427 QRVAQMKVELHRSDLAREV 371 +R + +VE R+DL+ +V Sbjct: 68 ERELRNRVERERADLSVQV 86
>TIG_WOLSU (Q7M7M4) Trigger factor (TF)| Length = 432 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/36 (47%), Positives = 24/36 (66%) Frame = -2 Query: 451 LLDEKIKKQRVAQMKVELHRSDLAREVTKAVMDLID 344 LL EKIK+Q + KVEL+ S+L TK V +L++ Sbjct: 271 LLKEKIKEQIATEKKVELYNSELK---TKLVDNLVE 303
>MYSP_BLOTA (Q8MUF6) Paramyosin (Allergen Blo t 11)| Length = 875 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -2 Query: 466 DDKARLLDEKIKKQRVAQMKVELHRSDLAREVTKAVMDLID*CESDE 326 +DK RLL E ++ +R + +VE +SD +T +M+L + E E Sbjct: 36 EDKIRLLSEDLESERELRQRVEREKSD----ITVQLMNLTERLEETE 78
>MYH13_HUMAN (Q9UKX3) Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)| (MyHC-eo) Length = 1938 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Frame = -2 Query: 475 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 371 K+ + +AR+ L+E+I+ + + K+E RSDLARE+ Sbjct: 1111 KIKELQARIEELEEEIEAEHTLRAKIEKQRSDLAREL 1147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,739,612 Number of Sequences: 219361 Number of extensions: 1249714 Number of successful extensions: 4032 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4031 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
