Clone Name	rbah61o14
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	1005	0.0
2	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	573	e-160
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	551	e-154
4	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	545	e-152
5	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	478	e-132
6	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	478	e-132
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	472	e-130
8	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	375	e-100
9	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	236	6e-59
10	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	236	6e-59
11	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
12	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
13	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	6e-28
14	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
15	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	6e-28
16	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	6e-28
17	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	6e-28
18	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	6e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
20	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	133	6e-28
21	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	2e-24
22	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	121	2e-24
23	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	121	2e-24
24	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	119	1e-23
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	107	4e-20
27	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	2e-18
28	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	98	4e-17
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	4e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	1e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	1e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	1e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	82	2e-12
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	8e-12
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
37	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
38	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.46
39	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.46
40	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.46
41	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	1.8
42	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	1.8
43	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
44	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	1.8
45	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	1.8
46	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	1.8
47	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	1.8
48	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	7.2
49	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	7.2
50	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	7.2
51	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	7.2
52	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	7.2
53	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	7.2
54	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	7.2
55	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	7.2
56	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	7.2
57	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	7.2
58	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	7.2
59	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	7.2
60	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	7.2
61	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	7.2
62	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	7.2
63	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	7.2
64	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	7.2
65	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	40	7.2
66	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	7.2
67	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	7.2
68	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	7.2

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 1005 bits (507), Expect = 0.0
 Identities = 519/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                        
Query: 12   aatgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 71
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 72   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 132  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                                        
Query: 192  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153

                                                                        
Query: 252  agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 1093

                                                                        
Query: 312  aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 1033

                                                                        
Query: 372  cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 973

                                                                        
Query: 432  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 913

                                                      
Query: 492  cacccgagcacgcagagcacccgaaaaagtcaatggattgtc 533
            ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 912  cacccgagcacgcagagca-ccgaaaaagtcaatggattgtc 872

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  573 bits (289), Expect = e-160
 Identities = 296/297 (99%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243

                                                                        
Query: 417  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 1183

                                                                     
Query: 477  cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtcaatggattgtc 533
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1182 cacctcatcgtcgtacacccgagcacgcagagca-ccgaaaaagtcaatggattgtc 1127



 Score =  383 bits (193), Expect = e-103
 Identities = 226/232 (97%), Gaps = 4/232 (1%)
 Strand = Plus / Minus

                                                                        
Query: 12   aatgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 70
            |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 71   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 129
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 130  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 188
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                
Query: 189  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 239
            |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  551 bits (278), Expect = e-154
 Identities = 285/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126

                                                                        
Query: 417  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 7066

                                                          
Query: 477  cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtc 522
            |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7065 cacctcatcgtcgtacacccgagcacgcagagca-ccgaaaaagtc 7021



 Score =  438 bits (221), Expect = e-120
 Identities = 226/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 12   aatgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 71
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 72   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                                        
Query: 132  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 7573

                                                            
Query: 192  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 239
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 313  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 372
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 373  ttctcgactgtcatctttggctgctcgaa 401
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                         
Query: 462  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcag 506
            ||||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcag 3768

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  545 bits (275), Expect = e-152
 Identities = 387/423 (91%), Gaps = 1/423 (0%)
 Strand = Plus / Minus

                                                                        
Query: 111  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 170
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 171  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 230
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 231  tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 290
            |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                                        
Query: 291  ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 350
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250

                                                                        
Query: 351  catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 410
            |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| |||||
Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190

                                                                        
Query: 411  cccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccca 470
             ||||||||||||||||||||||||||||| |||||||| |||||||| ||    |||||
Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccca 1130

                                                                        
Query: 471  cttgcgcacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtcaatggatt 530
            |||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct: 1129 cttgcgcacctcgtcgtcgtacacccgagcacgcagagca-ccgaagaagtcgatggact 1071

               
Query: 531  gtc 533
            |||
Sbjct: 1070 gtc 1068

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  478 bits (241), Expect = e-132
 Identities = 284/297 (95%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 237 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                                                       
Query: 297 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373

                                                                       
Query: 357 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313

                                                                       
Query: 417 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
           |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 253

                                                                    
Query: 477 cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtcaatggattgtc 533
           |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 252 cacctcgtcgtcgtacacccgagcacgcagagca-ccgaaaaagtcgatggattgtc 197



 Score =  246 bits (124), Expect = 6e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                       
Query: 38  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 91
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 92  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 151
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 152 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 211
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                       
Query: 212 gcaaagtaccttgctgtgctcctttacc 239
           ||||||||||||||||||| ||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  478 bits (241), Expect = e-132
 Identities = 284/297 (95%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
            ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163

                                                                        
Query: 417  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
            |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 1103

                                                                     
Query: 477  cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtcaatggattgtc 533
            |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 1102 cacctcgtcgtcgtacacccgagcacgcagagca-ccgaaaaagtcgatggattgtc 1047



 Score =  246 bits (124), Expect = 6e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 38   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 91
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 92   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 151
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 152  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 211
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 212  gcaaagtaccttgctgtgctcctttacc 239
            ||||||||||||||||||| ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  472 bits (238), Expect = e-130
 Identities = 275/286 (96%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 237 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                                                       
Query: 297 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167

                                                                       
Query: 357 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
           |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107

                                                                       
Query: 417 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
           |||||||||||| ||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 47

                                                         
Query: 477 cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtc 522
           |||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 46  cacctcgtcgtcgtacacccgagcacgcagagca-ccgaaaaagtc 2

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  375 bits (189), Expect = e-100
 Identities = 271/297 (91%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174

                                                                        
Query: 417  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 476
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1114

                                                                     
Query: 477  cacctcatcgtcgtacacccgagcacgcagagcacccgaaaaagtcaatggattgtc 533
            ||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 1113 cacctcaacgtcgtacacccgagcacgcagagca-ccgaagaagtcgatggactgtc 1058



 Score =  180 bits (91), Expect = 3e-42
 Identities = 171/195 (87%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 52   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 105
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 106  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 164
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 165  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 224
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 225  ctgtgctcctttacc 239
             ||||||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  236 bits (119), Expect = 6e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 180  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 236
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1038

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  236 bits (119), Expect = 6e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 180  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 236
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1073

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 120    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 180    ggcattttggtcggtgcaaccttccggcacgggca 214
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                          
Query: 237    accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
              |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                                                          
Query: 297    catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
              || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429

                                                                          
Query: 357    cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
               |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489

                                               
Query: 417    ccgcgagttcaccagcctcttgccaatgttctc 449
              || ||||||||||||||||||||||||||||||
Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 138    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 197
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 198    accttccggcacggg 212
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 466    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
              ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 108582



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 421    gagttcaccagcctcttgccaatgttctc 449
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 120   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 180   ggcattttggtcggtgcaaccttccggcacgggca 214
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                         
Query: 237   accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
             |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                                                         
Query: 297   catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
             || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306

                                                                         
Query: 357   cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366

                                              
Query: 417   ccgcgagttcaccagcctcttgccaatgttctc 449
             || ||||||||||||||||||||||||||||||
Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 138   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 197
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 198   accttccggcacggg 212
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 466   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
             ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 30459



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 421   gagttcaccagcctcttgccaatgttctc 449
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1043

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 120      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 180      ggcattttggtcggtgcaaccttccggcacgggca 214
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 237      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                                            
Query: 297      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568

                                                                            
Query: 357      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628

                                                 
Query: 417      ccgcgagttcaccagcctcttgccaatgttctc 449
                || ||||||||||||||||||||||||||||||
Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 138      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 197
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 198      accttccggcacggg 212
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 466      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
                ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 28303721



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 421      gagttcaccagcctcttgccaatgttctc 449
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1037

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1075

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1074

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 950  cctcgagttcaccagcctcttgccaatgttctc 918



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 466 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
           ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 858

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 120      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 180      ggcattttggtcggtgcaaccttccggcacgggca 214
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 237      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                                            
Query: 297      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017

                                                                            
Query: 357      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077

                                                 
Query: 417      ccgcgagttcaccagcctcttgccaatgttctc 449
                || ||||||||||||||||||||||||||||||
Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 138      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 197
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 198      accttccggcacggg 212
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 466      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
                ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 28286170



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 421      gagttcaccagcctcttgccaatgttctc 449
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1079

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 126 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 185
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 186 ttggtcggtgcaaccttccggcacgggca 214
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
           |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                                                       
Query: 297 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
           || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445

                                                                       
Query: 357 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385

                                            
Query: 417 ccgcgagttcaccagcctcttgccaatgttctc 449
           || ||||||||||||||||||||||||||||||
Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 466 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
           ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 292

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  121 bits (61), Expect = 2e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 237  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 296
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                                                        
Query: 297  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 356
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239

                                                                        
Query: 357  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 416
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179

                                             
Query: 417  ccgcgagttcaccagcctcttgccaatgttctc 449
            || ||||||||||||||||||||||||||||||
Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  117 bits (59), Expect = 4e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 120  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 180  ggcattttggtcggtgcaaccttccggcacgggca 214
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 466  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagc 509
            ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagc 1086

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 300
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941

                                                                        
Query: 301  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 360
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 940  tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881

                                                                        
Query: 361  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 420
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 880  tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821

                                
Query: 421  gagttcaccagcctcttgcc 440
            ||||||||||||||||||||
Sbjct: 820  gagttcaccagcctcttgcc 801



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 130  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 189
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 190  tcggtgcaaccttc 203
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 300
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 301  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 360
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 361  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 420
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 421  gagttcaccagcctcttgcc 440
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 130  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 189
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 190  tcggtgcaaccttc 203
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  107 bits (54), Expect = 4e-20
 Identities = 159/194 (81%)
 Strand = Plus / Minus

                                                                        
Query: 313  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 372
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 373  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 432
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 433  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 492
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                          
Query: 493  acccgagcacgcag 506
            ||||| || |||||
Sbjct: 1062 acccgcgcccgcag 1049

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 180 ggcattttggtcggtgcaaccttccggcacgggca 214
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 241  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 300
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242

                                                                        
Query: 301  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 360
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182

                                                                        
Query: 361  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 420
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122

                             
Query: 421  gagttcaccagcctctt 437
            |||||||||||||||||
Sbjct: 1121 gagttcaccagcctctt 1105



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 130  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 189
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 190  tcggtgcaaccttc 203
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 241  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 300
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 301  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 360
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 361  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 420
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 421  gagttcaccagcctctt 437
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 130  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 189
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 190  tcggtgcaaccttc 203
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 242 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 301
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 302 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 361
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 362 actctagcagcttctcgactgtcatctttggctgctcgaa 401
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 301
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 302  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 361
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 362  actctagcagcttctcgactgtcatctttggctgctcgaa 401
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 301
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 302  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 361
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 362  actctagcagcttctcgactgtcatctttggctgctcgaa 401
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 313  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 372
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 373  ttctcgactgtcatctttggctgctcgaa 401
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                         
Query: 462  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcag 506
            ||||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcag 1199

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 259 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 318
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 319 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 374
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 120     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 180     ggcattttggtcggtgcaaccttccggcacgggca 214
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 120   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 179
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 180   ggcattttggtcggtgcaaccttccggcacgggca 214
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 270  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 329
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 330  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 389
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 390  tggctgctcgaa 401
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 262  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 311
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 275   catcacccagagctgcctggct 296
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 25    aatatatttagagatatattaa 46
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    tatatttagagatatattaac 47
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tatatttagagatatattaac 47
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      aaacatcagatattaaaagtg 116
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 313  agctgcacacgcttgacattgtcctgctc 341
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      aaacatcagatattaaaagtg 116
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     aaacatcagatattaaaagtg 116
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 27   tatatttagagatatattaac 47
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 271  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 330
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 331  ttgtcctgctcctggacgagcatg 354
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 gtcagcaagctgcacacgct 325
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    tcagatattaaaagtggcat 120
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    tcagatattaaaagtggcat 120
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tcagatattaaaagtggcat 120
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aatatatttagagatatatt 44
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    ttgacattgtcctgctcctg 344
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 129  ggtgtaaaggcagctgccgtcgtcgctc 156
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    aaacatgcccagcaatcgcttgga 72
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tggcatgcttaaaaggtgta 134
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ttgacattgtcctgctcctg 344
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  ccgaaaaagtcaatggattg 531
            ||||||||||||||||||||
Sbjct: 1106 ccgaaaaagtcaatggattg 1087

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  catcacccagagctgcctggctca 298
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aatatatttagagatatatt 44
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    atcagatattaaaagtggcatgct 123
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,505,655
Number of Sequences: 3902068
Number of extensions: 3505655
Number of successful extensions: 64727
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64418
Number of HSP's gapped (non-prelim): 261
length of query: 533
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 510
effective length of database: 17,143,297,704
effective search space: 8743081829040
effective search space used: 8743081829040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---