ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61o11 |
|---|---|
| Clone Library Name | barley_pub |
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 66.2 bits (160), Expect = 8e-11 Identities = 36/82 (43%), Positives = 53/82 (64%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 333 P +P +A+VGNLS++++E DL DFF + SIR ID T SRGF +V+FE ++ Sbjct: 89 PSEPP--FTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVEFETADT 145 Query: 332 LEKAVGMNQSELRGRPVKIAYA 267 L A+ ++ +L GRPV+I A Sbjct: 146 LSAALALSGEDLMGRPVRITVA 167
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.8 bits (138), Expect = 3e-08 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372 S R++ T +++P+ P+ CL + LS +E+DLR+ F + ++ + D+RTG S Sbjct: 103 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 159 Query: 371 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 252 RGF V FE DD E++E+A GM EL GR +++ Y+I RA Sbjct: 160 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 200
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.8 bits (138), Expect = 3e-08 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372 S R++ T +++P+ P+ CL + LS +E+DLR+ F + ++ + D+RTG S Sbjct: 101 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 157 Query: 371 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 252 RGF V FE DD E++E+A GM EL GR +++ Y+I RA Sbjct: 158 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 198
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 57.4 bits (137), Expect = 4e-08 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Frame = -1 Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 G + YVG+L +NI+E LR F+ RI SI+ +D TG S+G+ + F D E +KA Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 320 V-GMNQSELRGRPVKIAY 270 + +N EL GRP+K+ + Sbjct: 308 LEQLNGFELAGRPMKVGH 325 Score = 41.2 bits (95), Expect = 0.003 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 PE+ D + + L+ I +DL +FF + ++ +R D+ + SRG +V+F D Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVS 205 Query: 335 SLEKAVGMNQSELRGRP--VKIAYAIINRA 252 S+ A+G+ + G P V+ + A NRA Sbjct: 206 SVRLAIGLTGQRVLGVPIIVQASQAEKNRA 235
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.4 bits (137), Expect = 4e-08 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Frame = -1 Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 G + YVG+L +NI+E LR F+ RI SI+ +D TG S+G+ + F D E +KA Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 320 V-GMNQSELRGRPVKIAY 270 + +N EL GRP+K+ + Sbjct: 308 LEQLNGFELAGRPMKVGH 325 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 PE+ D + + L+ I +DL +FF + ++ +R D+ + S+G +V+F D Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205 Query: 335 SLEKAVGMNQSELRGRP--VKIAYAIINRA 252 S+ A+G+ + G P V+ + A NRA Sbjct: 206 SVPLAIGLTGQRVLGVPIIVQASQAEKNRA 235
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 57.0 bits (136), Expect = 5e-08 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Frame = -1 Query: 641 SDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQK-----KTEFQSDPEKPDGCLSAY 480 S E A +++ L DG ++G R ++V + +R+ ++ +Q + P Y Sbjct: 164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPH---KLY 220 Query: 479 VGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306 V NLSW ++ + LRD F S + D+ +G SRGF + F E++ A+ MN+ Sbjct: 221 VANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNE 280 Query: 305 SELRGRPVKIAYA 267 EL GRP+++ A Sbjct: 281 VELEGRPLRLNVA 293
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 56.2 bits (134), Expect = 8e-08 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG LSW+ S+KDL+D+F K + +D TG SRGF + F+D S+EK + + Sbjct: 78 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137 Query: 305 SELRGRPV 282 L GR + Sbjct: 138 HRLDGRVI 145
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 56.2 bits (134), Expect = 8e-08 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -1 Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 56.2 bits (134), Expect = 8e-08 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -1 Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = -1 Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414 E +I AS + + S P + + ++G LSW+ ++KDL+D+F K + Sbjct: 62 EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282 +D TG SRGF V F++ ES++K + + +L G+ + Sbjct: 122 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 165
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG LSW+ S+KDL+D+F K + +D TG SRGF + F+D S+EK + + Sbjct: 71 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 130 Query: 305 SELRGRPV 282 L GR + Sbjct: 131 HRLDGRVI 138
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/74 (36%), Positives = 46/74 (62%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309 +AYVGNL +N + D+ FK I S+R DK T +GFC+V+F++ +SL++A+ + Sbjct: 42 TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101 Query: 308 QSELRGRPVKIAYA 267 + L R +++ A Sbjct: 102 GALLGDRSLRVDIA 115
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/74 (36%), Positives = 46/74 (62%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309 +AYVGNL +N + D+ FK I S+R DK T +GFC+V+F++ +SL++A+ + Sbjct: 42 TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101 Query: 308 QSELRGRPVKIAYA 267 + L R +++ A Sbjct: 102 GALLGDRSLRVDIA 115
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 + + A ++L+ +G +I + F R+ + +S R K+ S +VGNL Sbjct: 251 KEESAATQALKRNGAQIADGF-RIRVDLASETSSRDKR--------------SVFVGNLP 295 Query: 464 WNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGR 288 + + E + + F I ++R DK TG +GF +V FE+ +S+ A+ +N SEL GR Sbjct: 296 YKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGR 355 Query: 287 PVKIAYAI 264 +++ ++ Sbjct: 356 KLRVMRSV 363 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = -1 Query: 605 GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 426 G K+ +R + ++ T S+R KK + + E+ + +VGNL ++K L+ FFK Sbjct: 149 GVKVADRKI-LDDTEDTVVSQR-KKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFK 206 Query: 425 S-SRIASIRF 399 +I S+RF Sbjct: 207 EYGQIESVRF 216
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 + + A K+L+ +G +I F +RV+ TAS ++ S +VGNL Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SVFVGNL 292 Query: 467 SWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291 + + E L + F I ++R + TG RGF +V FE+ +++ A+ +N SEL G Sbjct: 293 PYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 352 Query: 290 RPVKIAYAI 264 R +++ ++ Sbjct: 353 RKLRVMRSV 361
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 52.8 bits (125), Expect = 9e-07 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 + +VGNLS+N +E DL F I SIR D ++G +GF +V F D +S +K V M Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426 Query: 311 NQSELRGRPVKIAYA 267 N + GRP ++ ++ Sbjct: 427 NGHFIAGRPCRLDFS 441 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Frame = -1 Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFA 396 E+ R + ++ + + + + +VG LSWN+ ++ L ++F + I R Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295 Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMN-QSELRGRPVKI 276 +D ++G S+G+ +VDFE E+ + AV N E+ GR V + Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 52.8 bits (125), Expect = 9e-07 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 + + A K+L+ +G +I F +RV+ TAS ++ S +VGNL Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SVFVGNL 298 Query: 467 SWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291 + I + L + F I ++R + TG RGF +V FE+ +++ A+ +N SEL G Sbjct: 299 PYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 358 Query: 290 RPVKIAYAI 264 R +++ ++ Sbjct: 359 RKLRVMRSV 367
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 52.8 bits (125), Expect = 9e-07 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 375 SS Q Q D ++ +VG LSW +EK+LRD F K I SI D +TG Sbjct: 41 SSDNQSAASGQRDDDR-----KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGR 95 Query: 374 SRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282 SRGF + F + E+++K ++ + + V Sbjct: 96 SRGFAFIVFTNTEAIDKVSAADEHIINSKKV 126 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L+ IS+++++ +F + I + DK+ +GFC + F+ ++ + + + Sbjct: 139 FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPK 198 Query: 305 SELRGRPVKIAYA 267 ++ G+ V + A Sbjct: 199 QKIAGKEVDVKRA 211
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L + E+ +RD+F+ I I IDK TG RGF V+F+D + ++K V Q Sbjct: 125 FVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ 184 Query: 305 SELRGRPVKIAYAI 264 +L G+ V + A+ Sbjct: 185 HQLNGKMVDVKKAL 198
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%) Frame = -1 Query: 641 SDEVALKSLELDGYKIGNRF--MRVERCRITASSKR-QKKTEFQSDPEKPDGCLSAYVGN 471 SD+ AL + E + ++ R M E ++ A ++ +TE + ++ S YVGN Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGN 61 Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 294 + ++++ ++L+ F S + + DK TG +GF +++F + + A+ +N S L Sbjct: 62 VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121 Query: 293 GRPVKI 276 RP+K+ Sbjct: 122 ERPLKV 127
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 52.0 bits (123), Expect = 2e-06 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Frame = -1 Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459 E A K++EL +GY + R + V + S +R + +F+ YVGNL W+ Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPS-------CRVYVGNLPWD 159 Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285 + L F + ++ S R D+ TG SRGF V + + A+ ++ L GR Sbjct: 160 VDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219 Query: 284 VKIAYA 267 V++ A Sbjct: 220 VRVNVA 225 Score = 35.0 bits (79), Expect = 0.19 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -1 Query: 524 FQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGD-SRGFCHVDF 348 F PE+ +VGNL +++ + L F ++ + I I R D SRGF V Sbjct: 48 FSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTM 103 Query: 347 EDDESLEKAVG-MNQSELRGRPVKI 276 E EKAV +N ++ GR + + Sbjct: 104 STVEEAEKAVELLNGYDMDGRQLTV 128
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)| Length = 447 Score = 52.0 bits (123), Expect = 2e-06 Identities = 34/123 (27%), Positives = 58/123 (47%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 ES++ K+LE +G R++ V K + +S P DG + + L Sbjct: 168 ESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVR--LRGLP 225 Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRP 285 ++ +EKD+ DFF I I F +D R G +V FE+ E +A+ ++ E+ R Sbjct: 226 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 285 Query: 284 VKI 276 ++I Sbjct: 286 IEI 288 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -1 Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS----IRFAIDKRTGDSRGFCHVDFED 342 E+ D L W+ + +D+ +FF RI + I F ++ R G RG ++ E Sbjct: 111 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMES 169 Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIIN 258 ++ ++KA+ ++ + R V++ Y I N Sbjct: 170 EQDVQKALEKHRMYMGQRYVEV-YEINN 196
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 312 +A++GNL ++++E ++DFF+ I+++R + D +GF + +FED +SL A+ + Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156 Query: 311 NQSELRGRPVKIAYA 267 N+ L R +++ A Sbjct: 157 NEESLGNRRIRVDVA 171
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 51.2 bits (121), Expect = 3e-06 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = -1 Query: 563 RITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDK 387 R+ + +TE PE +VG + + E DLRD+FK + S +DK Sbjct: 85 RVVEPKRAVPRTEI-GRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDK 143 Query: 386 RTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 T RGF V+F+D + ++K ++RG+ + + A+ Sbjct: 144 ETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKAL 184
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/123 (26%), Positives = 57/123 (46%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 ES++ K+LE +G R++ V K + + P DG + + L Sbjct: 200 ESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVR--LRGLP 257 Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRP 285 ++ +EKD+ DFF I I F +D R G +V FE+ E +A+ ++ E+ R Sbjct: 258 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 317 Query: 284 VKI 276 ++I Sbjct: 318 IEI 320
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -1 Query: 503 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 327 PD +VG L+W E+ L F + + D+ TG SRGF V F+D++S++ Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 326 KAV-GMNQSELRGRPVKI 276 A+ GMN +L GR + + Sbjct: 64 DAIEGMNGQDLDGRSITV 81
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Frame = -1 Query: 524 FQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348 FQS D + +VG+L+ N+ ++ LR+ FK S D +TG SRG+ V F Sbjct: 150 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 209 Query: 347 EDDESLEKAV-GMNQSELRGRPVKIAYA 267 + + A+ M +L GRP++I +A Sbjct: 210 TSQDDAQNAMDSMQGQDLNGRPLRINWA 237
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 49.3 bits (116), Expect = 1e-05 Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 312 +A++GNL ++++E+ +++FF+ I+++R + + +GF + +FED +SL A+ + Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 156 Query: 311 NQSELRGRPVKIAYA 267 N+ L R +++ A Sbjct: 157 NEESLGNRRIRVDVA 171
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 49.3 bits (116), Expect = 1e-05 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 S +VGN++ +++ + + D FK +I I D+ TG +G+ +++FE EKA+ + Sbjct: 65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQL 124 Query: 311 NQSELRGRPVKIA 273 N EL+G+ + ++ Sbjct: 125 NGGELKGKKIAVS 137
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 YVGNLSW + + L + F + ++ R D+ +G S+GF V + ++KA+ +N Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319 Query: 308 QSELRGRPVKIAYA 267 ++L GR ++++ A Sbjct: 320 GADLDGRQIRVSEA 333 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318 L +VGNLS+N+ L F+S+ + + DK TG SRGF V +E A Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158 Query: 317 GMNQSELRGRPVKI 276 N E GRP+++ Sbjct: 159 QFNGYEFEGRPLRV 172
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 + +K S ++GN+ +N + +++ + FK +I DK T + F +++F+D Sbjct: 93 EEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDS 152 Query: 338 ESLEKAVGMNQSELRGRPVKI 276 S+E A+ MN S R RP+ + Sbjct: 153 SSIENALVMNGSLFRSRPIVV 173
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 S YVGN+ + + ++L F + + DK +G +GF +++F D ES+ ++ + Sbjct: 168 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 227 Query: 311 NQSELRGRPVKIAYAIINR 255 ++S RGR +K+ NR Sbjct: 228 DESLFRGRQIKVIPKRTNR 246
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 S YVGN+ + + ++L F + + DK +G +GF +++F D ES+ ++ + Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231 Query: 311 NQSELRGRPVKIAYAIINR 255 ++S RGR +K+ NR Sbjct: 232 DESLFRGRQIKVIPKRTNR 250
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 S YVGN+ + + ++L F + + DK +G +GF +++F D ES+ ++ + Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231 Query: 311 NQSELRGRPVKIAYAIINR 255 ++S RGR +K+ NR Sbjct: 232 DESLFRGRQIKVIPKRTNR 250
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 48.5 bits (114), Expect = 2e-05 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Frame = -1 Query: 632 VALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNIS 453 + L L G I + + E+ R+ A + +K G + YVG+L +NI+ Sbjct: 224 IGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGN--------GGPMRLYVGSLHFNIT 275 Query: 452 EKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVK 279 E LR F+ +I +I D TG S+G+ + F D E +A+ +N EL GRP++ Sbjct: 276 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335 Query: 278 IAY 270 + + Sbjct: 336 VGH 338 Score = 40.4 bits (93), Expect = 0.005 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 PE+ D + + L+ I +DL DFF + ++ +R D+ + S+G +V+F + + Sbjct: 160 PEERDA-RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 218 Query: 335 SLEKAVGMNQSELRGRPV 282 S+ A+G+ L G P+ Sbjct: 219 SVPLAIGLTGQRLLGVPI 236
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 381 T +KR + E +VG L N E+ LR++F + + S++ DK T Sbjct: 101 TVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160 Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIIN 258 G RGF V+F+D ++++KA+ Q ++ V + +I N Sbjct: 161 GKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYN 201
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309 ++G LSW + LRD F + + +D+ TG SRGF V+F D+ + A+ M+ Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 Query: 308 QSELRGRPVKI 276 EL GR +++ Sbjct: 98 GKELNGRHIRV 108
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -1 Query: 503 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 327 PD +VG L+W ++ L F + + D+ TG SRGF V F+D++S++ Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 326 KAV-GMNQSELRGRPVKI 276 A+ GMN +L GR + + Sbjct: 64 DAIEGMNGQDLDGRSITV 81
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGD 375 SS +++K E +P + +VG LSW+I ++ L+ F+ + R ++ T Sbjct: 154 SSNKKQKNEETEEPA------TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207 Query: 374 SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 SRG+ +VDFE+ EKA+ M E+ GRP+ Sbjct: 208 SRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 239 Score = 47.4 bits (111), Expect = 4e-05 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ A K++ E+ G +I R + + + + +F P +P L ++GNL Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTL--FLGNL 274 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSE-LR 294 S+N + + F K + S+R T +GF +V F + E +KA+ Q E + Sbjct: 275 SFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYID 334 Query: 293 GRPVKIAYA 267 RPV++ ++ Sbjct: 335 NRPVRLDFS 343
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VG L+W +++ L F I + D+ TG SRGF V F+D++S+ A+ GMN Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 308 QSELRGRPVKI 276 EL GR + + Sbjct: 69 GQELDGRNITV 79
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Frame = -1 Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP---DGCLSAYVGNL 468 +EV + +GY++ R +RV ++++ + F+ D YVGNL Sbjct: 139 EEVEAACQQFNGYELDGRALRVNS---GPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNL 195 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294 +W + + L F + ++ + D+ +G SRGF V + E + A+ ++ +L Sbjct: 196 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLN 255 Query: 293 GRPVKIAYA 267 GR ++++ A Sbjct: 256 GRAIRVSPA 264
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372 S R++ +++P+ P+ CL + LS +E+DLR+ F K IA + D+++ S Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255 RGF V FE+ D++ E N EL GR +++ ++I R Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 47.4 bits (111), Expect = 4e-05 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Frame = -1 Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459 DE + + Y + R + V + S + P + YVGNL W+ Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA-------PRVYEPAFRVYVGNLPWD 254 Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285 + L F + ++ R D+ TG SRGF V D + L +A+ ++ L GR Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 314 Query: 284 VKIAYA 267 +++ A Sbjct: 315 IRVNVA 320
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 + +K S ++GN+ +N + +++ + FK I DK T + F +++F+D Sbjct: 53 EEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDS 112 Query: 338 ESLEKAVGMNQSELRGRPVKI 276 S+E A+ MN S R RP+ + Sbjct: 113 SSIENALVMNGSLFRSRPIVV 133
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 345 Q DP K ++G LSW S LRD+F K I D T SRGF V F Sbjct: 17 QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70 Query: 344 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 252 D S++K +G EL + + A RA Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG LS N +D++ +F+ ++ DK T RGF V FE+++ +EK ++ Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 172 Query: 305 SELRGRPVK 279 E+ + V+ Sbjct: 173 HEINNKMVE 181
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309 +VG L+W + +L R F + + + D+ TG SRGF V F+D++S++ A+ MN Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 308 QSELRGRPVKI 276 EL GR + + Sbjct: 69 GKELDGRTITV 79
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 345 Q DP K ++G LSW S LRD+F K I D T SRGF V F Sbjct: 17 QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70 Query: 344 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 252 D S++K +G EL + + A RA Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG LS N +D++ +F+ ++ DK T RGF V FE+++ +EK ++ Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 172 Query: 305 SELRGRPVK 279 E+ + V+ Sbjct: 173 HEINNKMVE 181
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 8/101 (7%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEK-----PDGCLSAYVGNLSWNISEKD--LRDFFKS-SRIASIRFA 396 S +++K + D K ++ +V NL +++ E D LR F++ + IR Sbjct: 679 SKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPI 738 Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIA 273 R GD RG+C+V+F++++S +A+ M++ + GRP+ ++ Sbjct: 739 FSNR-GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVS 778
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%) Frame = -1 Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP------------DG 495 +EV + +GY++ R +RV S +K E S E D Sbjct: 139 EEVEAACQQFNGYELDGRALRVN------SGPPPEKRENSSFRENSSFRGGSRGGGSFDS 192 Query: 494 CLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318 YVGNL+W + + L F + ++ + D+ +G SRGF V + E + A+ Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 252 Query: 317 -GMNQSELRGRPVKIAYA 267 ++ +L GR ++++ A Sbjct: 253 ESLDGVDLNGRAIRVSPA 270
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -1 Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 279 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 333 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 334 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 39.3 bits (90), Expect = 0.010 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +S P K + +V LS + +E+ L++ F S A R D+ TG S+GF VDF Sbjct: 568 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 620 Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267 +E + A M E+ G V + +A Sbjct: 621 EEDAKAAKEAMEDGEIDGNKVTLDWA 646
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 46.6 bits (109), Expect = 6e-05 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 YVGNLSW + + L F + ++ R D+ +G S+GF V ++ + ++ A+ ++ Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266 Query: 308 QSELRGRPVKIAYA 267 ++L GR ++++ A Sbjct: 267 GADLDGRQIRVSEA 280
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 K+ + D KP L+ +VG + + E +LRD+F K +I +I D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D ++++K V + G ++ A+ Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -1 Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Frame = -1 Query: 623 KSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKD 444 K+L+L+G K+ +++E+ + S K KK + +V NL + ++E + Sbjct: 336 KALQLNGKKLMGLEIKLEKAKSKESLKENKKER---------DARTLFVKNLPYRVTEDE 386 Query: 443 LRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGRPVKIAY 270 +++ F+++ +R ++K G S+G +++F+ + EKA+ Q +E+ GR + I Y Sbjct: 387 MKNVFENA--LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDY 442 Score = 41.2 bits (95), Expect = 0.003 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = -1 Query: 566 CRITASSKRQKKTEFQSDPEKPDGCLSA-----------YVGNLSWNISEKDLRDFFKSS 420 C T R + EF S P G ++A +V LS + +E+ LR+ F+ S Sbjct: 518 CNNTEIEGRAIRLEFSS-PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS 576 Query: 419 RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQSELRGRPVKIAYA 267 S R D+ TG S+GF VDF E + A M E+ G V + +A Sbjct: 577 --ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 46.6 bits (109), Expect = 6e-05 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Frame = -1 Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459 E A K++E+ + Y + R + V + +++R ++ E P + YVGN+ W Sbjct: 188 EEAEKAVEMYNRYDVNGRLLTVNK-----AARRGERPE--RPPRTFEQSYRIYVGNIPWG 240 Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285 I + L F + ++ S R D+ TG SRGF V + + A+ ++ L GR Sbjct: 241 IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRT 300 Query: 284 VKIAYA 267 +++ A Sbjct: 301 IRVNVA 306 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -1 Query: 539 QKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKR-TGDSRGF 363 +++ EFQ PE +VGNL +++ + L F+ + + I I R T SRGF Sbjct: 124 EEEEEFQEPPEDA----KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGF 179 Query: 362 CHVDFEDDESLEKAVGM-NQSELRGR 288 V E EKAV M N+ ++ GR Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGR 205
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -1 Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 278 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 332 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 333 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 39.3 bits (90), Expect = 0.010 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +S P K + +V LS + +E+ L++ F S A R D+ TG S+GF VDF Sbjct: 567 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 619 Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267 +E + A M E+ G V + +A Sbjct: 620 EEDAKAAKEAMEDGEIDGNKVTLDWA 645
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -1 Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426 G R + + + +K+QK + +P + +VGNL++N S +L+ D F Sbjct: 277 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 331 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + +A +D R G +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 332 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377 Score = 39.3 bits (90), Expect = 0.010 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +S P K + +V LS + +E+ L++ F S A R D+ TG S+GF VDF Sbjct: 566 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 618 Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267 +E + A M E+ G V + +A Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWA 644
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 K+ + D KP L+ +VG + + E +LRD+F K +I +I D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D ++++K V + G ++ A+ Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -1 Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 K+ + D KP L+ +VG + + E +LRD+F K +I +I D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D ++++K V + G ++ A+ Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -1 Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369 +R+++ E DP++P+ ++G LS+ ++ LR+ F K + D +T SR Sbjct: 17 RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V + E ++ A+ ++ GR V+ A+ Sbjct: 77 GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = -1 Query: 500 DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 D YVGNLSW + + L++ F + + + D+ +G SRGF V + + + Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263 Query: 323 AV-GMNQSELRGRPVKIAYA 267 A+ +N +L GR ++++ A Sbjct: 264 AIDSLNGVDLDGRSIRVSAA 283
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 46.2 bits (108), Expect = 8e-05 Identities = 32/106 (30%), Positives = 54/106 (50%) Frame = -1 Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 414 G R + + + +K+QK S+P P + ++GNL+ N S +L+ Sbjct: 281 GKRKKEMTKQKEAPEAKKQKIEG--SEPTTP---FNLFIGNLNPNKSVAELKVAISELFA 335 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + A+D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 336 KNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 ES E K+LEL G K+ +++E+ + D +K + NLS Sbjct: 358 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 404 Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288 +NI+E +L++ F+ + + + + G S+G +++F+ + EK + Q +E+ GR Sbjct: 405 FNITEDELKEVFEDA----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 460 Query: 287 PVKIAY 270 V + Y Sbjct: 461 SVSLYY 466 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +S P K + +V LS + +E+ L++ F+ S A R D+ TG S+GF VDF Sbjct: 569 RSQPSK-----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNS 621 Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267 +E + A M E+ G V + +A Sbjct: 622 EEDAKAAKEAMEDGEIDGNKVTLDWA 647
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VG L + ++E D+ F I +I DK+TG S+GFC + +ED S AV N Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98 Query: 308 QSELRGRPVKIAYAIINRA 252 +++GR +++ + RA Sbjct: 99 GIKIKGRTIRVDHVSNYRA 117
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = -1 Query: 506 KPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESL 330 K G ++G L N++E DLR FF + ++ + D+ SRGF + FE++ S+ Sbjct: 91 KKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV 150 Query: 329 EKAVGMNQSELRGRPVKIAYA 267 E L G+ V+I A Sbjct: 151 EHVTNERYINLNGKQVEIKKA 171 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG LSW ++++L R F + I + +G SRGF V F D ++ + Sbjct: 10 FVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGP 69 Query: 305 SELRGRPV 282 L GR + Sbjct: 70 HTLDGRTI 77
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Frame = -1 Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459 E A K++EL Y + R + V + S + FQ YVGN+ W+ Sbjct: 149 EEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT-------YRIYVGNIPWD 201 Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285 I + L F + ++ S R D+ +G SRGF V + + +A+ ++ L GR Sbjct: 202 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 261 Query: 284 VKI 276 +++ Sbjct: 262 IRV 264
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318 +S YVGNLS+++SE DL F + + ++ D+ TG RGF V+ E D A+ Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 317 GMNQSELRGRPVKI 276 ++ +E GR +K+ Sbjct: 61 ALDGAEWMGRDLKV 74
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP S +VGN+ + +E+ L+D F + S R D+ TG +G+ +++D Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 338 ESLEKAV-GMNQSELRGRPVKI 276 E+ A+ +N E GR +++ Sbjct: 68 ETALSAMRNLNGREFSGRALRV 89
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/106 (29%), Positives = 53/106 (50%) Frame = -1 Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 414 G R + + + +K+QK S+P P + ++GNL+ N S +L+ Sbjct: 279 GKRKKEMTKQKEAPEAKKQKVEG--SEPTTP---FNLFIGNLNPNKSVNELKFAISELFA 333 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + +D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 334 KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 43.9 bits (102), Expect = 4e-04 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 ES E K+LEL G K+ +++E+ + D +K + NLS Sbjct: 356 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 402 Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288 +NI+E +L++ F+ + + + + G S+G +++F+ + EK + Q +E+ GR Sbjct: 403 FNITEDELKEVFEDA----MEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458 Query: 287 PVKIAY 270 V + Y Sbjct: 459 SVSLYY 464 Score = 42.0 bits (97), Expect = 0.002 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = -1 Query: 542 RQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGF 363 R + E Q + + +V LS + +E+ L++ F+ S A R D+ TG S+GF Sbjct: 551 RTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGF 608 Query: 362 CHVDFEDDESLEKA-VGMNQSELRGRPVKIAYA 267 VDF +E + A M E+ G V + +A Sbjct: 609 GFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 641
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = -1 Query: 500 DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 D YVGNLSW + + L++ F + + + D+ +G SRGF V + + + Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264 Query: 323 AV-GMNQSELRGRPVKIAYA 267 A+ +N +L GR ++++ A Sbjct: 265 AIDSLNGIDLDGRSIRVSAA 284
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + N E +LR++FK + + + D RGF + FED++S+++AV M+ Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175 Query: 305 SELRGRPVKIAYA 267 ++ G+ V++ A Sbjct: 176 HDIMGKKVEVKRA 188 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 305 SELRGRPV 282 L GR + Sbjct: 73 HTLDGRNI 80
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRT 381 T KR + P +VG L + E+ LR++FK +I S+ DK T Sbjct: 93 TVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDT 152 Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 G RGF ++F+D + ++K + ++ + + + AI Sbjct: 153 GKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + N E +LR++FK + + + D RGF + FED++S+++AV M+ Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175 Query: 305 SELRGRPVKIAYA 267 ++ G+ V++ A Sbjct: 176 HDIMGKKVEVKRA 188 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 305 SELRGRPV 282 L GR + Sbjct: 73 HTLDGRNI 80
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Frame = -1 Query: 638 DEVALKSLELDGYKIGNRFMRVERC---RITASSKRQKKTEFQSDPEKPDGCLSA----Y 480 +EV++ EL + N +ER +I +S QK S+ E+ +S + Sbjct: 267 EEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLF 326 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMNQ 306 + NL+++ +E DL+ F ++ + IDK+T + +GF ++DF D D+++ + ++ Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386 Query: 305 SELRGR 288 +GR Sbjct: 387 KPFQGR 392
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D ++P L+ +VG + + E LRD+F+ +I I D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D +S++K V + G ++ A+ Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VG L+W +++DL R F + + + D+ +G SRGF V F+D++++ A+ MN Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 308 QSELRGRPVKI 276 EL GR + + Sbjct: 69 GKELDGRVITV 79
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D ++P L+ +VG + + E LRD+F+ +I I D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D +S++K V + G ++ A+ Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D ++P L+ +VG + + E LRD+F+ +I I D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D +S++K V + G ++ A+ Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D ++P L+ +VG + + E LRD+F+ +I I D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D +S++K V + G ++ A+ Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VG L+W S + L + F S I + D+ TG SRGF V F + S+ A+ MN Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 308 QSELRGRPVKIAYA 267 EL GR + + A Sbjct: 71 GKELDGRNITVNQA 84
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S YVG+L ++SE L D F ++SIR D T S G+ +V+F D E+ KA+ Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97 Query: 314 MNQSELRGRPVKIAYA 267 +N + ++GR +I ++ Sbjct: 98 LNYTPIKGRLCRIMWS 113 Score = 33.9 bits (76), Expect = 0.42 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Frame = -1 Query: 629 ALKSLELDGYK--IGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNI 456 AL EL+G K +G + ER + K+Q + K G ++ +V NL ++ Sbjct: 277 ALNDSELNGEKLYVGRAQKKNERMHVL---KKQYEAYRLEKMAKYQG-VNLFVKNLDDSV 332 Query: 455 SEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVK 279 ++ L + F + + G S+GF V F E KA+ NQ + G+P+ Sbjct: 333 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 392 Query: 278 IAYA 267 +A A Sbjct: 393 VAIA 396 Score = 33.9 bits (76), Expect = 0.42 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -1 Query: 521 QSDPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348 Q DP + G + ++ NL +I K L D F I S + A D+ G S+GF V F Sbjct: 114 QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHF 172 Query: 347 EDDESLEKAV-GMNQSELRGRPVKIA 273 E++ + ++A+ +N L G+ + +A Sbjct: 173 EEEGAAKEAIDALNGMLLNGQEIYVA 198
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 ++G L + ++E D+ F I +I DK+TG S+GFC + +ED S AV N Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98 Query: 308 QSELRGRPVKIAYAIINRA 252 +++GR +++ + RA Sbjct: 99 GIKIKGRTIRVDHVSNYRA 117
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%) Frame = -1 Query: 602 YKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS 423 YK + + T + + S P D + +VGNL + E+ L +F S Sbjct: 228 YKEKPASIAAKELNATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNS 287 Query: 422 SR---IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL------RGRPVKIAY 270 + S+R D +T +GF V F+D S+ KA+ +N L +GR ++I+ Sbjct: 288 KLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLNDKPLETGTQKKGRKLRISR 347 Query: 269 AIIN 258 A N Sbjct: 348 AKSN 351
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEKPD----GCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDK 387 S +Q+ T+ + + K D C ++G L+W+ +E +LR++F K + ++ D Sbjct: 136 SPPQQQVTQTKEERSKADLSKESC-KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP 194 Query: 386 RTGDSRGFCHVDFEDDESLEKAV 318 TG SRGF + FE S+++ V Sbjct: 195 ATGRSRGFGFLSFEKPSSVDEVV 217 Score = 36.2 bits (82), Expect = 0.085 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + ++ K+ +FF I + +DK TG SRGF V ++ +++++ Sbjct: 246 FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF 305 Query: 305 SELRGRPVKIAYA 267 + + R ++I A Sbjct: 306 IDFKDRKIEIKRA 318
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 44.3 bits (103), Expect = 3e-04 Identities = 34/127 (26%), Positives = 68/127 (53%), Gaps = 3/127 (2%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 E E++ K L +D +G + E+ A+S ++ + D K ++ +V NL Sbjct: 662 EETELSGKCLTID---VGPPSKQKEK----AASLKRDMPKVAHDSSKDS--VTVFVSNLP 712 Query: 464 WNISEKD--LRDFFK-SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 294 ++I E + LR F+ + IR R GD RG+C+V+F +++S ++A+ +++ + Sbjct: 713 YSIEEPEVKLRPLFEVCGEVVQIRPIFSNR-GDFRGYCYVEFGEEKSAQQALELDRKIVE 771 Query: 293 GRPVKIA 273 GRP+ ++ Sbjct: 772 GRPMFVS 778
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Frame = -1 Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465 ES E K+LEL G K+ +++E+ + D +K + NLS Sbjct: 355 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 401 Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288 +NI+E +L++ F+ + + + + G S+G +++F+ + EK + Q +E+ GR Sbjct: 402 FNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 457 Query: 287 PVKIAY 270 V + Y Sbjct: 458 SVSLYY 463 Score = 43.1 bits (100), Expect = 7e-04 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Frame = -1 Query: 554 ASSKRQKKTEFQSD-----PEKPDGCLSA-----YVGNLSWNISEKDLRDFFKSSRIASI 405 A KR+K+ Q + +K +G S ++GNL+ N S +L+ + Sbjct: 276 APGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKND 335 Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 +D RTG +R F +VDFE E LEKA+ + ++ G +K+ Sbjct: 336 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = -1 Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +S P K + +V LS + +E+ L++ F+ S A R D+ TG S+GF VDF Sbjct: 566 RSQPSK-----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNS 618 Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267 +E + A M E+ G V + +A Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWA 644
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VG L+W ++ L F + + D+ TG SRGF V F+D+++++ A+ GMN Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 308 QSELRGRPVKI 276 +L GR + + Sbjct: 71 GQDLDGRSITV 81
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D ++P L+ +VG + + E LRD+F+ +I I D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D S++K V + G ++ A+ Sbjct: 146 GFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKAL 180
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315 S YVG L +++E L + F S +ASIR D T S G+ +V+F + E EKA+ Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140 Query: 314 MNQSELRGRPVKIAYA 267 +N + ++GRP +I ++ Sbjct: 141 LNYTLIKGRPCRIMWS 156 Score = 34.3 bits (77), Expect = 0.32 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318 ++ ++ NL + ++ L+ +F I S + D++ G S+GF V + E KAV Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVT 422 Query: 317 GMNQSELRGRPVKIAYA 267 MNQ L G+P+ +A A Sbjct: 423 EMNQRMLAGKPLYVALA 439
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 43.9 bits (102), Expect = 4e-04 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS--SRIASIRFAIDKRTGDSRGFCHVDFE 345 S P P+ S +VG+LS +E DL F++ + ++R D TG SR F V F Sbjct: 185 SIPSTPE--FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFG 242 Query: 344 DDESLEKA-VGMNQSELRGRPVKIAYA 267 D++ +A + M+ +GR +++AYA Sbjct: 243 DEDERRRALIEMSGKWFQGRALRVAYA 269
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + + E LR++F+ +I SI DK++G RGF V F+D + ++K V Sbjct: 103 FVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKY 162 Query: 305 SELRGRPVKIAYAI 264 + G ++ A+ Sbjct: 163 HTINGHNAEVRKAL 176
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342 + P+ P ++G LSW +++ LR++F + + D T SRGF V F D Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252 ++K + ++ EL + + A RA Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 43.1 bits (100), Expect = 7e-04 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Frame = -1 Query: 542 RQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRG 366 R + + S P D +VGNL++ E+ L R F I +R D +T +G Sbjct: 253 RHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKG 312 Query: 365 FCHVDFEDDESLEKAVGMNQSEL-RGRPVKIAYA 267 F ++ F+D ++KA+ +N+ ++ GR ++I A Sbjct: 313 FAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 7e-04 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A +++E ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV MN EL Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKQIYVGRA 266
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 7e-04 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A +++E ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV MN EL Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKQIYVGRA 266
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 43.1 bits (100), Expect = 7e-04 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Frame = -1 Query: 626 LKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEK 447 L E+ G KI + ++ + + ++F P K Y+GNL+ ++ + Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYK------VYIGNLAKTVTNE 198 Query: 446 DLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKI 276 L+DFF + ++ + T S GF V F +E +E A+ +N S L G+ +++ Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 43.1 bits (100), Expect = 7e-04 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%) Frame = -1 Query: 551 SSKRQK---KTEFQSDPEKPDGC---LSAYVGNLSWNISEKD-----LRDFFKSSRIASI 405 S+KR+K KT ++ K D LS ++GNL+ + E D LR+FF + Sbjct: 206 SAKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLN-STKEFDELKDALREFFSKKNLT-- 262 Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 D R G+S+ F +VDF +E +EKA+ + ++ G VKI A+ Sbjct: 263 --IQDIRIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAM 307 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSAYV-GNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFC 360 +K++ + + P+G V NLS++ +E LR+ F+ + SIR I + G ++GF Sbjct: 398 EKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA--TSIR--IPQNQGRAKGFA 453 Query: 359 HVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267 ++F E + A+ N +E+ GR +++ ++ Sbjct: 454 FIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFS 485 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQ 306 +V LS + +E+ L++ F S + R D+ TG S+GF VDF E + A M Sbjct: 505 FVRGLSEDTTEETLKEAFDGS--VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMED 562 Query: 305 SELRGRPVKIAYA 267 E+ G V + +A Sbjct: 563 GEIDGNKVTLDFA 575
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 42.7 bits (99), Expect = 0.001 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D +P L+ +VG + + E LRD+ +S +I +I D+++G R Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKR 159 Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 GF V F+D ++++K V + G ++ A+ Sbjct: 160 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 194 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339 DP++P+ ++G LS+ ++ LR+ F+ ++ D +T SRGF V + Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 338 ESLEKAVGMNQSELRGRPVKIAYAI 264 E ++ ++ ++ GR V+ A+ Sbjct: 79 EEVDASMSARPHKVDGRVVEPKRAV 103
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A ++++ ++G + +R + V + S+R+++ E+ + K + Y+ N Sbjct: 146 ETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198 Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ +K LR+ F + S++ +D TG SRGF V++ + E +KAV MN E+ Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257 Query: 293 GRPVKIAYA 267 GR + + A Sbjct: 258 GRMIYVGRA 266 Score = 31.6 bits (70), Expect = 2.1 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Frame = -1 Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444 E++G ++ R + V R + + + K +F+ ++ ++ YV NL I + Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270 LR +F I S + + G S+GF V F E KAV MN + +P+ +A Sbjct: 310 LRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367 Query: 269 A 267 A Sbjct: 368 A 368
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 +VGN+ +++SE+ + + F + + + +D TG +G+ +F D E+ AV +N Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69 Query: 308 QSELRGRPVKIAY 270 SEL R +++ + Sbjct: 70 NSELGPRKIRVEF 82
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + N E +L+++F + + + D RGF + FED++S+++AV M+ Sbjct: 117 FVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 176 Query: 305 SELRGRPVKIAYA 267 ++ G+ V++ A Sbjct: 177 HDIMGKKVEVKRA 189 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L W+ +++ LR +F + DK T SRGF V F+D + + Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72 Query: 305 SELRGRPV 282 L GR + Sbjct: 73 HTLDGRNI 80
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255 E A+ M+ + L GR +++ A R Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEK-----PDGCLSAYVGNLSWNISEKD--LRDFFKS-SRIASIRFA 396 S +++K + D K ++ +V NL +++ E D LR F++ + IR Sbjct: 697 SKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPI 756 Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIA 273 R GD RG+ +V+F++++S +A+ M++ + GRP+ ++ Sbjct: 757 FSNR-GDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVS 796
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360 K QS ++P L +VGNL + ++ DL++ F + +I +R + TG +GF Sbjct: 215 KTASIQSSKKEPSSIL--FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272 Query: 359 HVDFEDDESLEKAVGMNQSELR 294 VDF D ++ KA+ + + R Sbjct: 273 FVDFPDIDTCMKAMELGHNSWR 294 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 20/111 (18%) Frame = -1 Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-------------------K 426 +K +K E +S E +VGNLS++ +++ L DFF Sbjct: 86 AKYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPIT 145 Query: 425 SSRIASIRFAIDK-RTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 + +I I + K + ++GF +VDF +++L+ A+ ++ L GR + I Sbjct: 146 TEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D +P L+ +VG + + E LR++F+ +I I D+ +G R Sbjct: 87 KRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKR 146 Query: 368 GFCHVDFEDDESLEKAV 318 GF V FED +S++K V Sbjct: 147 GFAFVTFEDHDSVDKIV 163
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P +G S V NL++ S LR F K R+ + D+ T +SRGF V F D Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66 Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255 E A+ M+ + L GR +++ A R Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYGR 94
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Frame = -1 Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 375 S RQ+ + + P+ C+ + L+ N +++ +R+ F K I I+ ID T Sbjct: 88 SRDRQRMRQARDHPQA-SRCIGVF--GLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHR 144 Query: 374 SRGFCHVDFED--DESLEK--AVGMNQSELRGRPVKIAYAIINRA 252 SRGFC + FE+ D + K GM E+ GR +++ Y+I RA Sbjct: 145 SRGFCFIYFENLGDARVAKDACTGM---EVDGRRIRVDYSITQRA 186
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 YVG L+ + +K L F I I+ +D T RGF V+FE E A+ MN Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 308 QSELRGRPVKIAYA 267 +SEL GR +++ A Sbjct: 69 ESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 YVG L+ + +K L F I I+ +D T RGF V+FE E A+ MN Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 308 QSELRGRPVKIAYA 267 +SEL GR +++ A Sbjct: 69 ESELFGRTIRVNLA 82
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369 K+ + D +P L+ +VG + + E LRD+F+ +I +I D+++G R Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKR 159 Query: 368 GFCHVDFEDDESLEKAV 318 GF V F+D ++++K V Sbjct: 160 GFAFVTFDDHDTVDKIV 176
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE-SLEKAVGMN 309 +VGNLS+++++ LR F+ I IR A + +G +GF +DF+++E S + + Sbjct: 242 FVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKS 301 Query: 308 QSELRGRPVKIAY 270 ++ GRP+++ Y Sbjct: 302 CRKIAGRPLRMEY 314 Score = 33.1 bits (74), Expect = 0.72 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 18/96 (18%) Frame = -1 Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-----------------SRIASIRFAIDKRT 381 +K + ++GNLS++ ++ DL FF + +R++ R A Sbjct: 119 KKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSN 178 Query: 380 G-DSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276 ++GFC++ F++ E ++ + +++S L GR + I Sbjct: 179 AMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + + E LRD+F+ +I +I D+++G RGF V F+D + ++K V Sbjct: 115 FVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY 174 Query: 305 SELRGRPVKIAYAI 264 + G ++ A+ Sbjct: 175 HTINGHNAEVRKAL 188
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + + E LRD+F+ +I +I D+++G RGF V F+D + ++K V Sbjct: 103 FVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY 162 Query: 305 SELRGRPVKIAYAI 264 + G ++ A+ Sbjct: 163 HTINGHNAEVRKAL 176
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRI-ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 Y+GNL+ ++E D+ F + + + D+ TG+S+GF ++ +ED S AV +N Sbjct: 34 YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 308 QSELRGRPVKI 276 ++ GR +KI Sbjct: 94 GFKIGGRALKI 104
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 ++ N+S+ SE+D R F + + AID RTG S+GF +V F E +A ++ Sbjct: 313 FIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLD 372 Query: 308 QSELRGRPVKI 276 + +GR + I Sbjct: 373 KQIFQGRLLHI 383 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Frame = -1 Query: 455 SEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPV 282 +E+ LR+FF K + ++ + KR G+SR F + ++ ++ E+AV N+S + + Sbjct: 14 TEEKLREFFSKQGDVTDVKL-MKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72 Query: 281 KIAYA 267 ++ +A Sbjct: 73 EVEFA 77
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.6 bits (96), Expect = 0.002 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A +++E ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ ++ L++ F K S++ D+ +G S+GF V FE E +KAV MN EL Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKQIYVGRA 266
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 Y+G LS E L+D F S + + R +K TG SRG+ V+F ++S A+ MN Sbjct: 34 YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93 Query: 308 QSELRGRPVKIAYA 267 EL G + + A Sbjct: 94 GQELNGFNISVNVA 107
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.2 bits (95), Expect = 0.003 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A +++E ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SQKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ ++ L++ F K S++ D+ +G S+GF V FE E +KAV MN EL Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKQIYVGRA 266
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = -1 Query: 569 RCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAI 393 R R SS+ +++ + + C+ + L+ N S+ +R+ F K I I+ I Sbjct: 73 RHRSGRSSRDRERMHKSREHPQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQMVI 130 Query: 392 DKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIINRA 252 D +T SRGFC + FE A + E+ GR +++ ++I RA Sbjct: 131 DAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRA 178
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = -1 Query: 584 FMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIAS 408 F+R+ + + K K F+S P ++G+L ++E+ L+ FK S Sbjct: 67 FLRINNNK--SGHKNGKLKSFESKKLVP-----LFIGDLHETVTEETLKGIFKKYPSFVS 119 Query: 407 IRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIIN 258 + +D T S G +++FED E EKA+ +N +++ G+ ++I ++ N Sbjct: 120 AKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRN 170
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 40.8 bits (94), Expect = 0.003 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A ++++ ++G + +R + V + S+R+++ E+ + K + Y+ N Sbjct: 146 ETHEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198 Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 ++ +K LR+ F + S++ +D +G SRGF V++ + E +KAV MN E+ Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257 Query: 293 GRPVKIAYA 267 GR + + A Sbjct: 258 GRMIYVGRA 266 Score = 32.7 bits (73), Expect = 0.94 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Frame = -1 Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444 E++G ++ R + V R + + + K +F+ ++ ++ YV NL I + Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270 LR +F I S + + G S+GF V F E KAV MN + +P+ +A Sbjct: 310 LRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367 Query: 269 A 267 A Sbjct: 368 A 368
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMN 309 ++ N+ ++ +E+D + F + + A+D RTG S+GF +V F+D E A + ++ Sbjct: 304 FLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363 Query: 308 QSELRGRPVKIAYAIINRA*RLSSW 234 + +GR + I A + RL + Sbjct: 364 KQIFQGRLLHILPADAKKTHRLDEF 388
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 +VG LS++ +E+ L F K +I+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 69 GKSVDGRQIRVDQA 82
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 40.4 bits (93), Expect = 0.005 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%) Frame = -1 Query: 563 RITASSKRQKKT--------EFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS--RI 414 R T + KR++K E S+P K A++ N+ +++ + L+D K + Sbjct: 40 RPTQNEKRKEKNIKRGGNRFEPYSNPTKR---YRAFITNIPFDVKWQSLKDLVKEKVGEV 96 Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPVKI 276 + +D G SRG V+F+ +ES++KA +N+ L GRP+K+ Sbjct: 97 TYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 363 DP++ + YV L+ N++ DL DFFK + I +DK TG +G Sbjct: 352 DPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 411 Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267 V +ED + + AV + + +G +K++ A Sbjct: 412 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 40.4 bits (93), Expect = 0.005 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + + E LR++F+ +I S DK++G RGF V F D + ++K V Sbjct: 103 FVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKY 162 Query: 305 SELRGRPVKIAYAI 264 + G ++ A+ Sbjct: 163 HTINGHNAEVRKAL 176 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 ++G LS+ +E+ LR+F++ ++ D + SRGF V F ++ A+ Sbjct: 12 FIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARP 71 Query: 305 SELRGRPVKIAYAI 264 + GR V+ A+ Sbjct: 72 HTIDGRVVEPKRAV 85
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P D S +VGNL + E+ L + F I +R D +T +GF +V F+D + Sbjct: 272 PAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQ 331 Query: 335 SLEKAVGMNQSELRGR 288 S+ KA+ +N+ ++ + Sbjct: 332 SVNKALLLNEKPMKSQ 347
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 Y+G++ + E LR++F + +R + K+TG+S+G+ +V+FE DE Sbjct: 44 YIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDE 93
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRT 381 T KR E + P +VG L +++E DL + F + DK++ Sbjct: 76 TVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQS 135 Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264 G RGF V F++ ++ +KA + ++G V++ A+ Sbjct: 136 GKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV 174
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 40.0 bits (92), Expect = 0.006 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A ++++ ++G + +R + V + S+R+++ E+ + K + Y+ N Sbjct: 146 ETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198 Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294 ++ +K L++ F + S++ +D +G SRGF V++ + E +KAV MN E+ Sbjct: 199 GEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVN 257 Query: 293 GRPVKIAYA 267 GR V + A Sbjct: 258 GRMVYVGRA 266 Score = 31.6 bits (70), Expect = 2.1 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Frame = -1 Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444 E++G ++ R + V R + + + K +F+ ++ ++ YV NL I + Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270 LR +F I S + + G S+GF V F E KAV MN + +P+ +A Sbjct: 310 LRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367 Query: 269 A 267 A Sbjct: 368 A 368
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 40.0 bits (92), Expect = 0.006 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVG-- 474 E + ALK + +G KI + V + ++ +K + K E P+K A V Sbjct: 55 EDVQRALKEITTFEGCKIN---VTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADK 111 Query: 473 -------NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318 NLS+ SE DL+ F K G RGF V F++ KA+ Sbjct: 112 KARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALK 171 Query: 317 GMNQSELRGRPVKIAYAI 264 GMN E++GR V + +A+ Sbjct: 172 GMNMKEIKGRTVAVDWAV 189
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 ++ Y+GNL+W +++DL D +S + + I+F ++ G S+GF V D S K Sbjct: 81 IALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKL 140 Query: 320 VG-MNQSELRGR 288 + +++ EL G+ Sbjct: 141 MDLLSKRELHGQ 152
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GM 312 ++GNL I EK L D F + + + + D TG+S+G+ ++F ++ + A+ M Sbjct: 103 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162 Query: 311 NQSELRGRPVKIAYA 267 N L RP+ ++YA Sbjct: 163 NGQYLCNRPITVSYA 177
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Frame = -1 Query: 536 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFC 360 +KT+ + EK + ++ N+ + E+D R F + + A+D RTG S+GF Sbjct: 330 QKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFA 389 Query: 359 HVDFEDDESLEKA-VGMNQSELRGRPVKI 276 +V F+D ++ A V +++ +GR + I Sbjct: 390 YVLFKDSKNAVNAYVELDKQIFQGRLLHI 418
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSR-IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312 + +V L+ ++ ++L DFF+ + + + DK +G S+G +V+F ++S++ A+ + Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300 Query: 311 NQSELRGRPV 282 + L G PV Sbjct: 301 SGKRLLGLPV 310
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 303 YVGNL ++ EK++ D F + I++ +D ++G F V+FED E AV Sbjct: 12 YVGNLPGDVREKEVEDIF--HKYGRIKY-VDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68 Query: 302 -ELRGRPVKIAY 270 E GR +++ + Sbjct: 69 YEFDGRRIRVEF 80
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315 + Y+ N ++ ++ L+D F K S++ D+ +G S+GF V FE E +KAV Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 314 MNQSELRGRPVKIAYA 267 MN EL G+ + + A Sbjct: 251 MNGKELNGKQIYVGRA 266
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = -1 Query: 485 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315 A++ N+ +++ + L+D K + + +D G SRG V+F+ +ES++KA Sbjct: 72 AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 130 Query: 314 MNQSELRGRPVKI 276 +N+ L GRP+K+ Sbjct: 131 LNKHSLSGRPLKV 143
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = -1 Query: 485 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315 A++ N+ +++ + L+D K + + +D G SRG V+F+ +ES++KA Sbjct: 71 AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 129 Query: 314 MNQSELRGRPVKI 276 +N+ L GRP+K+ Sbjct: 130 LNKHSLSGRPLKV 142
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P D S +VGNL + E+ L + F I +R D +T +GF +V F+D + Sbjct: 352 PSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQ 411 Query: 335 SLEKAVGMNQSEL 297 S+ KA+ +++ ++ Sbjct: 412 SVSKALLLHEKKI 424
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12| Length = 462 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Frame = -1 Query: 575 VERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSR---IASI 405 V + T + + + P D + +VGNL + E+ L +F S + S+ Sbjct: 238 VPKLNATEFEHAHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESV 297 Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 297 R D +T +GF V F+D S+ K++ +N + Sbjct: 298 RVIRDAKTNVGKGFALVQFKDTLSVNKSLLLNDKPM 333
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 342 +D + +VG++ +E+++R +F+ + + DKRTG +G C V + Sbjct: 111 TDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170 Query: 341 DESLEKAVGM--NQSELRG--RPVKIAYA 267 + ++A+ NQ L G PV++ YA Sbjct: 171 SKDADRAIRALHNQITLPGGTGPVQVRYA 199
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333 ++ NL + E+D R F + + I+ +TG +GF HV FED E+ Sbjct: 304 FLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPEN 354
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309 ++G L++ +E L F K RI+ + D+ T SRGF V FE+ D++ + + MN Sbjct: 8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67 Query: 308 QSELRGRPVKIAYA 267 + GR +++ A Sbjct: 68 GKSVDGRQIRVDQA 81
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 38.5 bits (88), Expect = 0.017 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A K++E ++G + +R + V R + S+++++ E + K + Y+ N Sbjct: 146 ETQEAADKAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGA---KAKEFTNVYIKNF 198 Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294 + ++ L++ F + S++ D G S+GF V +E E KAV MN E+ Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKIIFVGRA 266 Score = 33.5 bits (75), Expect = 0.55 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = -1 Query: 521 QSDPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348 Q DP + G + ++ NL +I K L D F + I S + D+ S+G+ V F Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHF 145 Query: 347 EDDESLEKAV-GMNQSELRGRPV 282 E E+ +KA+ MN L R V Sbjct: 146 ETQEAADKAIEKMNGMLLNDRKV 168
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 38.5 bits (88), Expect = 0.017 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = -1 Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 363 DP++ + YV L+ +++ DL DFFK + I +DK TG +G Sbjct: 353 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 412 Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267 V +ED + + AV + + +G +K++ A Sbjct: 413 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 445
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.5 bits (88), Expect = 0.017 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 20/156 (12%) Frame = -1 Query: 641 SDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEF-QSDPEKPDGCLSA------ 483 +D++A D + NR +R++ T SK+Q++ + Q PE+ + S Sbjct: 262 TDDMAKDEAVSDLDWLKNRRVRIKDGADTPVSKQQQQPDTEQQQPEETEVETSQESEEEK 321 Query: 482 -----------YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED- 342 ++ N+ + +E D R F + + A+D RTG S+GF +V F++ Sbjct: 322 SLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNA 381 Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 234 D + V +++ +GR + I A ++ +L + Sbjct: 382 DNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEF 417
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 38.5 bits (88), Expect = 0.017 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A ++++ ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFFKSSRIA-SIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294 ++ ++ L+++F A S++ D G SRGF V FE E +KAV MN +L Sbjct: 199 GEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKAIFVGRA 266
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 38.5 bits (88), Expect = 0.017 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 Y+G++ ++ E L+++F + +R + K+TG+S+G+ +V++E DE Sbjct: 44 YIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDE 93
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 38.1 bits (87), Expect = 0.022 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S YVG+L +++E L D F + + ++R D T S G+ +V+F + E +A+ Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 104 Query: 314 MNQSELRGRPVKIAYAIINRA*RLS 240 +N + +R RP++I + + + RLS Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLS 129
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 37.7 bits (86), Expect = 0.029 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 Y+G++ ++ +E+ + D + + +++ D +TG S+G+ ++F D ES AV +N Sbjct: 21 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80 Query: 308 QSELRGRPVKIAYA 267 +L R +K Y+ Sbjct: 81 GYQLGSRFLKCGYS 94
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 37.7 bits (86), Expect = 0.029 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 YVG+L + E L+ +F+ ++ +R + K+TG S+G+ V+FE DE Sbjct: 48 YVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDE 97
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = -1 Query: 515 DPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 342 DP + G + ++ NL +I K L D F S I S + A+D +G S+G+ V + + Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYAN 173 Query: 341 DESLEKAV 318 +ES +KA+ Sbjct: 174 EESAQKAI 181
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309 Y+G LS+N+ EKD++ FF R+ + G+ V+FED + AV +N Sbjct: 5 YIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYELN 56 Query: 308 QSELRGRPVKIAYA 267 EL G V + +A Sbjct: 57 GKELCGERVIVEHA 70
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309 YVG L +SE L + ++ + S+ D+ T + +GF V+F +E + A+ +N Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75 Query: 308 QSELRGRPVKI 276 +L G+P+K+ Sbjct: 76 MIKLYGKPIKV 86
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 37.7 bits (86), Expect = 0.029 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306 Y+G L+ +SEKD+ FF+ IR + K GF V+F+D E AV +N Sbjct: 6 YIGRLTSRVSEKDIEHFFRG--YGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNG 58 Query: 305 SELRGRPVKIAYA 267 EL G V + Y+ Sbjct: 59 KELGGERVILDYS 71
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -1 Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 359 HVDFEDDESLEKAV 318 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -1 Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 359 HVDFEDDESLEKAV 318 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = -1 Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360 F+ D E+ + L + YVGNLS+ +E+ + + F KS I I +DK + GFC Sbjct: 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84 Query: 359 HVDFEDDESLEKAV 318 V++ E A+ Sbjct: 85 FVEYYSRADAENAM 98
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 37.4 bits (85), Expect = 0.038 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306 ++G L+ +EK L+ F S I RT SRGF + FE+ + A MN Sbjct: 11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70 Query: 305 SELRGRPVKIAYA 267 L G+ +K+ A Sbjct: 71 KSLHGKAIKVEQA 83
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 37.0 bits (84), Expect = 0.050 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF-EDDESLEKAVGMN 309 ++ N+ ++ +E D + F + + A+D RTG+S+GF +V F + +E+++ + ++ Sbjct: 328 FLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELD 387 Query: 308 QSELRGRPVKIAYA 267 + +GR + I A Sbjct: 388 KQIFQGRLLHILAA 401
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 37.0 bits (84), Expect = 0.050 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV- 97 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.0 bits (84), Expect = 0.050 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%) Frame = -1 Query: 641 SDEVALKSLELDGYKIGNRFMRV--ERCRITASSKRQKKTEFQS-----DPEKPDGCLSA 483 S+E K+L+ + +G R++ V E+ TA + T +Q + E+ D S Sbjct: 341 SEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSG 400 Query: 482 --YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 +V NLS+ SE+DL F + ++ + + ID T +GF V F E KA Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457 Score = 32.3 bits (72), Expect = 1.2 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Frame = -1 Query: 644 ESDEVALKSLE---LDGYKIGNRFM-RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYV 477 E + ALK L+ +DG+K+ R R + +T++ K+Q K V Sbjct: 777 EQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVP--------KKQTTSKILV 828 Query: 476 GNLSWNISEKDLRDFFKS-SRIASIRFAIDKR-TGDSRGFCHVDFEDDESLEKAVG--MN 309 N+ + +++++R+ F + + ++R TG RGF VDF + +KA + Sbjct: 829 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 888 Query: 308 QSELRGRPVKIAYA 267 + L GR + + +A Sbjct: 889 STHLYGRRLVLEWA 902
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 36.6 bits (83), Expect = 0.065 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -1 Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 57 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 114 Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267 D S+ +A+ N RP+KI ++ Sbjct: 115 DQNSVPRALAFNGVMFGDRPLKINHS 140
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 36.6 bits (83), Expect = 0.065 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -1 Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 60 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117 Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267 D S+ +A+ N RP+KI ++ Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 36.6 bits (83), Expect = 0.065 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -1 Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345 DP K D + YVGNL+ + D L +FFK + +R A D+ T +R F V+F Sbjct: 60 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117 Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267 D S+ +A+ N RP+KI ++ Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 36.2 bits (82), Expect = 0.085 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++R FF +R S++ I RTG S+G+ V F +D ++K V Sbjct: 41 TVFVGGIDVRMDETEIRGFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 98 ESQINFHGKKLKLGPAI 114
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 36.2 bits (82), Expect = 0.085 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Frame = -1 Query: 554 ASSKRQKKTEFQSDPEKPDGCLSA----YVGNLSWNISEKDLRDFF-KSSRIASIRFAID 390 A R+ DPE + ++ NLS+ ++E D+R+ F K + + +D Sbjct: 283 AEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLD 342 Query: 389 KRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 234 + G S+GF + +E S A + + +GR V I A R +L + Sbjct: 343 SK-GHSKGFAMIRYEKPASALAAFQTDGTVFQGRIVHILPAAAKRENKLDEF 393
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 36.2 bits (82), Expect = 0.085 Identities = 21/75 (28%), Positives = 40/75 (53%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309 + +VG + ++E ++R +F+ I RTG S+G+ V F D+ ++K V + Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIV-ES 95 Query: 308 QSELRGRPVKIAYAI 264 Q + G+ +K+ AI Sbjct: 96 QISVHGKRLKLGPAI 110
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 36.2 bits (82), Expect = 0.085 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -1 Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333 E+P GC + +VG L N +E+ + + F+ I +IR + FCH+ F ++ Sbjct: 93 ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 145 Query: 332 LEKAVGMNQSELR 294 ++KA+ ++ +R Sbjct: 146 VDKALYLSGYRIR 158
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 36.2 bits (82), Expect = 0.085 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 ++ Y+GNL+W +++DL D S + I I+F ++ G S+GF + + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKL 140 Query: 320 VGM 312 + + Sbjct: 141 MDL 143
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 36.2 bits (82), Expect = 0.085 Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Frame = -1 Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468 E+ E A ++++ ++G + +R + V R + S+++++ E + ++ + Y+ N Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198 Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294 +++++ L++ F K S++ D G S+GF V FE E +KAV MN ++ Sbjct: 199 GDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMN 257 Query: 293 GRPVKIAYA 267 G+ + + A Sbjct: 258 GKSMFVGRA 266
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 36.2 bits (82), Expect = 0.085 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -1 Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333 E+P GC + +VG L N +E+ + + F+ I +IR + FCH+ F ++ Sbjct: 122 ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 174 Query: 332 LEKAVGMNQSELR 294 ++KA+ ++ +R Sbjct: 175 VDKALYLSGYRIR 187
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S +V N++ + +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 314 MNQSELRGRPVKIAYA 267 +++ + GR ++I +A Sbjct: 71 LDRKWICGRQIEIQFA 86
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S +V N++ + +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 314 MNQSELRGRPVKIAYA 267 +++ + GR ++I +A Sbjct: 71 LDRKWICGRQIEIQFA 86
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S ++ N++ +DLR +F + I + +D T RGF +V FED E A+ Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 314 MNQSELRGRPVKIAYA 267 +N+ + GR ++I +A Sbjct: 71 LNRKWVCGRQIEIQFA 86
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -1 Query: 500 DGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 D + V NLS + E++LRD F+ I + A DK TG ++GF V + D + K Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258 Query: 323 A 321 A Sbjct: 259 A 259
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -1 Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336 P D +VG L + E+ L + F S + +R D +T +GF +V F+D Sbjct: 267 PGAQDHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVN 326 Query: 335 SLEKAVGMN 309 S+E+A+ +N Sbjct: 327 SVEQALLLN 335
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 35.4 bits (80), Expect = 0.15 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 426 R+ER R +RQ++ E + +DP + D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 I I KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 35.4 bits (80), Expect = 0.15 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 426 R+ER R +RQ++ E + +DP + D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 I I KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 320 VG-MNQSELRGR 288 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 320 VG-MNQSELRGR 288 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -1 Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 ++ Y+GNL+W +++DL + S + I I+F ++ G S+GF V + S +K Sbjct: 81 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140 Query: 320 VG-MNQSELRGR 288 + + + EL G+ Sbjct: 141 MDLLPKRELHGQ 152
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -1 Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318 L W +E+DL+D+F + + ++ D +TG S+GF V F + E+ K + Sbjct: 111 LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 5 ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61 Query: 341 DESLEKAV 318 E A+ Sbjct: 62 PRDAEDAI 69
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 5 ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61 Query: 341 DESLEKAV 318 E A+ Sbjct: 62 PRDAEDAI 69
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 312 ++ N+ +++ + ++D + ++ + + G SRG V+F+D+E ++KA+ M Sbjct: 103 FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161 Query: 311 NQSELRGRPVKI 276 N+ +L GRP+ I Sbjct: 162 NKYDLSGRPLNI 173 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309 +V NL ++++ + L++ F S+ + FA I G S+G V F+ ES EKA MN Sbjct: 526 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMN 583 Query: 308 QSELRGRPVKI 276 ++ GR + + Sbjct: 584 GIKISGREIDV 594
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Frame = -1 Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333 EK + YV N + + ++ L++FF+ +I S + + K G S+GF V FE E+ Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEA 235 Query: 332 LEKAV-GMNQSEL-RGRPVKIAYA 267 E AV +N ++ G+ + +A A Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARA 259
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Frame = -1 Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSR 369 + + E + P++ +V ++ E ++++ F I +I +D+RTG S+ Sbjct: 55 RNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK 114 Query: 368 GFCHVDFE-DDESLEKAVGMNQSELRGRPVKIAYAII 261 G+ V++E ++L +N +E+ G+ +++ + + Sbjct: 115 GYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 34.7 bits (78), Expect = 0.25 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = -1 Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342 +D +G YVGNL ++ EKDL D F+K RI I K F V FED Sbjct: 6 ADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 62 Query: 341 DESLEKAV 318 E A+ Sbjct: 63 PRDAEDAI 70
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 312 ++ N+ +++ + ++D + ++ + + G SRG V+F+D+E ++KA+ M Sbjct: 94 FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152 Query: 311 NQSELRGRPVKI 276 N+ +L GRP+ I Sbjct: 153 NKYDLSGRPLNI 164 Score = 32.0 bits (71), Expect = 1.6 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309 +V NL ++++ + L++ F S+ + FA I G S+G V FE ES EKA MN Sbjct: 517 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMN 574 Query: 308 QSELRGRPVKI 276 ++ GR + + Sbjct: 575 GIKISGREIDV 585
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 34.7 bits (78), Expect = 0.25 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 S Y G+L ++E L D FK + + S+R D+ S G+ +++F + +A+ Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEA 108 Query: 314 MNQSELRGRPVKIAYAIINRA*RLS 240 +N + L RP++I + + + RLS Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLS 133
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 34.7 bits (78), Expect = 0.25 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = -1 Query: 557 TASSKRQKKTEFQS-DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR 384 T++S RQ + S DP + +VG L+ N+SEKDL+ F+ RI +I+ K Sbjct: 278 TSTSNRQPNQDLCSMDPLNT----TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKG 333 Query: 383 TGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291 G V + + + EKA+ Q L G Sbjct: 334 CG------FVQYSEKSAAEKAINTMQGALVG 358
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 +VG + + +E DLR FF ++ R G S+G+ V FE E +K Sbjct: 36 FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 +VG + + +E DLR FF ++ R G S+G+ V FE E +K Sbjct: 36 FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 264 -SQIHFHGKKLKLGPAI 279 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = -1 Query: 554 ASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFA---IDKR 384 AS ++ K + Q+ E S +V N+ ++ +E+ L F S+ S+++A IDK Sbjct: 273 ASKNKESKRKAQNKRED----FSVFVRNVPYDATEESLAPHF--SKFGSVKYALPVIDKS 326 Query: 383 TGDSRGFCHVDFEDDESLEKAV 318 TG ++G V F+D + + + Sbjct: 327 TGLAKGTAFVAFKDQYTYNECI 348
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 34.3 bits (77), Expect = 0.32 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEK----------------PDGCLSAYVGNLSWNISEKDLRDFF- 429 T+ K Q++ E +++ E P+ L +V L+ ++DL F Sbjct: 208 TSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVL--FVCKLNPVTQDEDLELIFS 265 Query: 428 KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 297 + +I S + DK TGDS + ++F++ ES+EKA Q+ L Sbjct: 266 RFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVL 309
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLE---KAVG 315 ++G L +++ E +L+ +F K I IR DK T S+G+ + F+D S + K +G Sbjct: 110 FIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIG 169 Query: 314 MNQSELRGRPVKIAYAIIN 258 ++ RG +K I++ Sbjct: 170 VH----RGIQIKDRICIVD 184
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -1 Query: 560 ITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR 384 +T R KK + + + G + Y+G+L +SE + ++ I+ R + KR Sbjct: 26 LTQIQGRTKKPQQKKKEKLNRGVV--YLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKR 83 Query: 383 TGDSRGFCHVDFEDDE 336 TG+S+G+ V+FE ++ Sbjct: 84 TGNSKGYAFVEFESED 99
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 371 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 428 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 429 -SQIHFHGKKLKLGPAI 444 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 264 -SQIHFHGKKLKLGPAI 279 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315 + +VG + + E ++ F R S++ I RTG S+G+ V F +D ++K VG Sbjct: 41 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98 Query: 314 MNQSELRGRPVKIAYAI 264 +Q G+ +K+ AI Sbjct: 99 -SQIHFHGKKLKLGPAI 114
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.9 bits (76), Expect = 0.42 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Frame = -1 Query: 569 RCRITASSKRQKKTEFQSDPEKPDGC-LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 396 R R + SK+ K+ E + P ++G L+ N+++ + + F + +I I Sbjct: 111 RRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMP 170 Query: 395 IDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +D+ S+G+ +V+FE E EKA+ M+ ++ G+ + Sbjct: 171 VDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -1 Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267 +D +T RGF V+FE+ E A+ MN+SE+ GR +++ A Sbjct: 3 MDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 33.9 bits (76), Expect = 0.42 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Frame = -1 Query: 539 QKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGF 363 QK+++ + + D Y+ NL N+ E + + K + S + + G S+GF Sbjct: 294 QKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGF 353 Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAII 261 C +F++ E A+ G++ + G + +A + Sbjct: 354 CFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACV 388
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDF 348 YVGNLS+ +E+ + + F KS + I +DK + GFC V++ Sbjct: 35 YVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEY 80
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 +VG + + +E DLR FF ++ R G S+G+ + FE E +K Sbjct: 36 FVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQK 88
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -1 Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318 L W +E+DL+++F + + ++ D +TG S+GF V F + E+ K + Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 33.5 bits (75), Expect = 0.55 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Frame = -1 Query: 500 DGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324 +G S + NLS+ + DL R F + I + DK + S+GF V F + E Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75 Query: 323 AVGMNQSEL-RGRPVKIAYAIINR 255 A+ +L GR +++ A +R Sbjct: 76 ALDRTDGKLVDGRELRVTLAKYDR 99
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 33.5 bits (75), Expect = 0.55 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQ 306 +VGNL +++++ L F + R G +RGF V F+D + KA N Sbjct: 33 FVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNG 92 Query: 305 SELRGRPVKIAYA 267 + RPVK++ A Sbjct: 93 KYIGSRPVKLSRA 105
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 33.5 bits (75), Expect = 0.55 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQS---DPEKP-----DGCLSAYVGNLSWNISEKDLR-DFFK 426 R+ER R +RQ+ E + DP D + +V ++++ +E LR +F Sbjct: 66 RMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 I I +KR+G RG+ +++E + + A Sbjct: 126 YGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSA 160
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 33.5 bits (75), Expect = 0.55 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEK---PDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDK 387 TA S Q DP PDG +V N+ + + DL+ F+ + S I Sbjct: 128 TAGSTNGSAAVTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN 187 Query: 386 RTGDSRGFCHVDFEDDESLEKA-VGMNQSELRGRPVKI 276 G S+GF V E + E+A ++ S + GR +++ Sbjct: 188 ERG-SKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 33.1 bits (74), Expect = 0.72 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -1 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306 V L ++++++L F++ I + R D +TG S G+ VDF + ++A+ +N Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNG 173 Query: 305 SELRGRPVKIAYA 267 +R + +K++YA Sbjct: 174 ITVRNKRLKVSYA 186
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 33.1 bits (74), Expect = 0.72 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318 S +VGNL+++ + +DL +FF S+I +R I G RG V+F + + +++A+ Sbjct: 137 SIFVGNLTYDSTPEDLTEFF--SQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAI 192
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 32.7 bits (73), Expect = 0.94 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -1 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306 V L ++++++L F++ I + R D +TG S G+ VDF + ++A+ +N Sbjct: 131 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 190 Query: 305 SELRGRPVKIAYA 267 +R + +K++YA Sbjct: 191 ITVRNKRLKVSYA 203
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 32.7 bits (73), Expect = 0.94 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -1 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306 V L ++++++L F++ I + R D +TG S G+ VDF + ++A+ +N Sbjct: 129 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188 Query: 305 SELRGRPVKIAYA 267 +R + +K++YA Sbjct: 189 ITVRNKRLKVSYA 201
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 32.7 bits (73), Expect = 0.94 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%) Frame = -1 Query: 614 ELDGYKIGNRFMRVERCRITA-------------SSKRQKKTEFQSDPEKPDGCLSAYVG 474 ELDG ++ + + +E R + SS+R + + P + + L V Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRL--IVE 113 Query: 473 NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSEL 297 NLS +S +DL+DF + + + FA R + G V+F L+ A+ ++ E+ Sbjct: 114 NLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VEFASYGDLKNAIEKLSGKEI 169 Query: 296 RGRPVKI 276 GR +K+ Sbjct: 170 NGRKIKL 176 Score = 30.8 bits (68), Expect = 3.6 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -1 Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 GC ++G L+ EKD+ FFK RI I RGF V+FED + A Sbjct: 3 GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53 Query: 320 V-GMNQSELRGRPVKIAYA 267 V ++ EL V I +A Sbjct: 54 VYELDGKELCSERVTIEHA 72
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 32.7 bits (73), Expect = 0.94 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE-DDESLEKAVGMN 309 YVGNLS+ SE+ L + F K I I +D+ GFC + ++ E+L ++ Sbjct: 49 YVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYLS 108 Query: 308 QSELRGRPVKI 276 +++L R + I Sbjct: 109 KTKLDDREITI 119
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 32.7 bits (73), Expect = 0.94 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -1 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306 V L ++++++L F++ I + R D +TG S G+ VDF + + A+ +N Sbjct: 89 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNG 148 Query: 305 SELRGRPVKIAYA 267 +R + +K++YA Sbjct: 149 VTVRNKRLKVSYA 161
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 32.7 bits (73), Expect = 0.94 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +V L+ +++DL F + +I S D++TGDS + ++FED +S E+A Sbjct: 256 FVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMD 315 Query: 305 SEL 297 S L Sbjct: 316 SVL 318
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 32.7 bits (73), Expect = 0.94 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%) Frame = -1 Query: 614 ELDGYKIGNRFMRVERCRITA-------------SSKRQKKTEFQSDPEKPDGCLSAYVG 474 ELDG ++ + + +E R + SS+R + + P + + L V Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRL--IVE 113 Query: 473 NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSEL 297 NLS +S +DL+DF + + + FA R + G V+F L+ A+ ++ E+ Sbjct: 114 NLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VEFASYGDLKNAIEKLSGKEI 169 Query: 296 RGRPVKI 276 GR +K+ Sbjct: 170 NGRKIKL 176 Score = 30.8 bits (68), Expect = 3.6 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -1 Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321 GC ++G L+ EKD+ FFK RI I RGF V+FED + A Sbjct: 3 GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53 Query: 320 V-GMNQSELRGRPVKIAYA 267 V ++ EL V I +A Sbjct: 54 VYELDGKELCSERVTIEHA 72
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402 R R + + +K+ + +S KP ++G L+ N+++ + + F + +I I Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191 Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +++ S+G+ +V+FE+ + EKA+ M+ ++ G+ + Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402 R R + + +K+ + +S KP ++G L+ N+++ + + F + +I I Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191 Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +++ S+G+ +V+FE+ + EKA+ M+ ++ G+ + Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402 R R + + +K+ + +S KP ++G L+ N+++ + + F + +I I Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191 Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +++ S+G+ +V+FE+ + EKA+ M+ ++ G+ + Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402 R R + + +K+ + +S KP ++G L+ N+++ + + F + +I I Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191 Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +++ S+G+ +V+FE+ + EKA+ M+ ++ G+ + Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = -1 Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402 R R + + +K+ + +S KP ++G L+ N+++ + + F + +I I Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191 Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282 +++ S+G+ +V+FE+ + EKA+ M+ ++ G+ + Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGD---SRGFCHVDFEDDESLEKAV-G 315 YVG L + + E+DL FFK RT D G+ V+FED + AV Sbjct: 6 YVGGLPYGVRERDLERFFKGY----------GRTRDILIKNGYGFVEFEDYRDADDAVYE 55 Query: 314 MNQSELRGRPVKI 276 +N EL G V + Sbjct: 56 LNGKELLGERVVV 68
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG L ++ ++ LR +F+ I D++TG SRG+ V D + E+A Sbjct: 14 FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 73 Query: 305 SELRGRPVKIAYAII 261 + GR + A + Sbjct: 74 PIIDGRKANVNLAYL 88
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG + + E ++R+FF K + ++ I R G +G+ V F +D ++ V Sbjct: 50 FVGGIDMKVDENEIREFFAKYGSVKEVKI-ITYRGGICKGYGFVYFSEDVDIQTIVDQPI 108 Query: 305 SELRGRPVKIAYAII 261 S +G+ +K+ AI+ Sbjct: 109 S-FKGKKLKLGPAIM 122
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306 +VG +S + +E DL F + + S + +D R G S+G+ V FE ++ ++ + Sbjct: 36 FVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTFETEQEAQRLQADGE 94 Query: 305 S-ELRGRPVKIAYAI 264 LR R + IA AI Sbjct: 95 CVVLRDRKLNIAPAI 109
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -1 Query: 488 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315 + YVGNL +I E+++ D F K + I + R G+ V+F+D E A+ G Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR---PPGYAFVEFDDARDAEDAIHG 64 Query: 314 MNQSELRGRPVKIAYA 267 + + G +++ A Sbjct: 65 RDGYDFDGHRLRVELA 80
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -1 Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306 V L ++++++L F++ I + R D +TG S G+ VDF + + A+ +N Sbjct: 106 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNG 165 Query: 305 SELRGRPVKIAYA 267 +R + +K++YA Sbjct: 166 ITVRNKRLKVSYA 178
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 31.6 bits (70), Expect = 2.1 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = -1 Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE-DDESLEKAVGMN 309 YVGNLS+ SE+ + + F K I I +D+ GFC + + DE+L ++ Sbjct: 49 YVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKYLS 108 Query: 308 QSELRGRPVKI 276 ++L + + I Sbjct: 109 DTKLDEKTITI 119
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 31.6 bits (70), Expect = 2.1 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = -1 Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 381 T KR + ++ E YV + + +E L ++F K + +DK T Sbjct: 92 TVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 151 Query: 380 GDSRGFCHVDFEDDESLEKAV 318 RGF V F+D +S+++ V Sbjct: 152 QKPRGFGFVTFDDHDSVDQCV 172 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -1 Query: 506 KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESL 330 +P+ +VG L+ N ++ +R+F+ I I D T SRGF V F + Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77 Query: 329 EKAVGMNQSELRGRPV 282 + A+ + G+ V Sbjct: 78 DAAMKQRPHIIDGKTV 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,233,928 Number of Sequences: 219361 Number of extensions: 1650514 Number of successful extensions: 4453 Number of sequences better than 10.0: 293 Number of HSP's better than 10.0 without gapping: 4259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4398 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
