ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCE3_SCHPO (O14369) Probable RNA-binding protein sce3 66 8e-11
2TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 58 3e-08
3TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 58 3e-08
4RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 57 4e-08
5RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 57 4e-08
6ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 57 5e-08
7ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 56 8e-08
8HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 56 8e-08
9HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 56 8e-08
10HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 55 1e-07
11ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ... 55 2e-07
12IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ... 55 2e-07
13IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ... 55 2e-07
14RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p... 54 3e-07
15RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro... 54 5e-07
16GAR2_SCHPO (P41891) Protein gar2 53 9e-07
17RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p... 53 9e-07
18SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 53 9e-07
19ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 53 9e-07
20PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin... 52 1e-06
21ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP) 52 2e-06
22GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1) 52 2e-06
23IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ... 52 2e-06
24ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 51 3e-06
25GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1) 50 4e-06
26GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 50 6e-06
27PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 49 1e-05
28IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ... 49 1e-05
29SGN1_YEAST (P40561) RNA-binding protein SGN1 49 1e-05
30ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 49 1e-05
31YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4 49 2e-05
32PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi... 49 2e-05
33PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi... 49 2e-05
34PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi... 49 2e-05
35RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 49 2e-05
36RB97D_DROME (Q02926) Ribonucleoprotein RB97D 49 2e-05
37GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 48 2e-05
38GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 48 2e-05
39NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 48 2e-05
40GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein 48 2e-05
41ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 48 3e-05
42TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran... 48 3e-05
43TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr... 48 3e-05
44TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr... 48 3e-05
45ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur... 47 4e-05
46YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12 47 4e-05
47MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 47 5e-05
48GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 47 5e-05
49MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa... 47 5e-05
50SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ... 47 5e-05
51ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 47 6e-05
52NUCL_PONPY (Q5RF26) Nucleolin 47 6e-05
53ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 47 6e-05
54ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 47 6e-05
55NUCL_CHICK (P15771) Nucleolin (Protein C23) 47 6e-05
56ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 47 6e-05
57NUCL_MACFA (Q4R4J7) Nucleolin 47 6e-05
58NUCL_HUMAN (P19338) Nucleolin (Protein C23) 47 6e-05
59CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 47 6e-05
60ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 47 6e-05
61ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 47 6e-05
62CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 47 6e-05
63ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec... 46 8e-05
64NUCL_RAT (P13383) Nucleolin (Protein C23) 46 8e-05
65RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2 46 8e-05
66RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 46 1e-04
67CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 46 1e-04
68CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 46 1e-04
69CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 46 1e-04
70ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 46 1e-04
71RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 46 1e-04
72CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 46 1e-04
73NUCL_MOUSE (P09405) Nucleolin (Protein C23) 45 1e-04
74ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur... 45 1e-04
75DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp... 45 1e-04
76RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 45 1e-04
77DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp... 45 1e-04
78MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote... 45 2e-04
79ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 45 2e-04
80GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro... 45 2e-04
81ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 45 2e-04
82ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 45 2e-04
83ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 45 2e-04
84GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 45 2e-04
85PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 45 2e-04
86RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2 45 2e-04
87NOP12_CANAL (Q5AHI7) Nucleolar protein 12 45 2e-04
88HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4... 44 3e-04
89SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ... 44 3e-04
90NUCL_MESAU (P08199) Nucleolin (Protein C23) 44 3e-04
91GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7 44 3e-04
92ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 44 3e-04
93PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 44 3e-04
94NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 44 4e-04
95RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 44 4e-04
96MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash... 44 4e-04
97MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa... 44 4e-04
98MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa... 44 4e-04
99NOP12_SCHPO (O13741) Nucleolar protein 12 43 7e-04
100PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 43 7e-04
101PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 43 7e-04
102RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 43 7e-04
103NUCL_XENLA (P20397) Nucleolin (Protein C23) 43 7e-04
104RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 43 0.001
105EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb... 43 0.001
106CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip... 43 0.001
107DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 42 0.001
108SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli... 42 0.001
109SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp... 42 0.001
110SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp... 42 0.001
111SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp... 42 0.001
112SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ... 42 0.001
113RNP24_SCHPO (Q09100) RNA-binding protein rnp24 42 0.001
114ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 42 0.001
115SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp... 42 0.001
116TRA2_DROVI (O02008) Transformer-2 sex-determining protein 42 0.001
117PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 42 0.001
118PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 42 0.001
119RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 42 0.002
120YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i... 42 0.002
121ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 42 0.002
122ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 42 0.002
123IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN... 42 0.002
124MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote... 42 0.002
125PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 42 0.002
126RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre... 42 0.002
127CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine... 41 0.003
128CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine... 41 0.003
129PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 41 0.003
130TRA2_DROME (P19018) Transformer-2 sex-determining protein 41 0.003
131PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres... 41 0.003
132EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (... 41 0.003
133MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote... 41 0.003
134CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r... 40 0.005
135CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine... 40 0.005
136CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine... 40 0.005
137HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (... 40 0.005
138EWS_MOUSE (Q61545) RNA-binding protein EWS 40 0.005
139RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 40 0.005
140NOP12_YEAST (Q08208) Nucleolar protein 12 40 0.005
141MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 40 0.006
142ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (... 40 0.006
143EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (... 40 0.006
144RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p... 40 0.006
145CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity fa... 40 0.006
146SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 40 0.008
147MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 40 0.008
148RSD1_SCHPO (O13845) RNA-binding protein rsd1 40 0.008
149RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri... 40 0.008
150PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 39 0.010
151HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (... 39 0.010
152HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn... 39 0.010
153NOP12_KLULA (Q6CKV6) Nucleolar protein 12 39 0.010
154NOP12_DEBHA (Q6BTS9) Nucleolar protein 12 39 0.013
155FCA_ARATH (O04425) Flowering time control protein FCA 39 0.013
156MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote... 39 0.013
157CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine... 39 0.017
158PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 39 0.017
159EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing... 39 0.017
160MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote... 39 0.017
161PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-... 39 0.017
162MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 39 0.017
163PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi... 38 0.022
164RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15 38 0.029
165MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos... 38 0.029
166PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 38 0.029
167SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr... 38 0.029
168YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 38 0.029
169RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri... 38 0.029
170NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k... 38 0.029
171NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k... 38 0.029
172NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2 38 0.029
173RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa... 37 0.038
174MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote... 37 0.050
175DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso... 37 0.050
176RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin... 37 0.050
177SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (S... 37 0.065
178DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso... 37 0.065
179DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso... 37 0.065
180SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser... 37 0.065
181SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S... 37 0.065
182DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso... 36 0.085
183MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote... 36 0.085
184DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 36 0.085
185COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX... 36 0.085
186CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity fa... 36 0.085
187PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 36 0.085
188COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX... 36 0.085
189FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei... 36 0.11
190FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei... 36 0.11
191SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35) 36 0.11
192IF34_SCHPO (P78795) Probable eukaryotic translation initiation f... 36 0.11
193NOP12_YARLI (Q6C2Q7) Nucleolar protein 12 36 0.11
194RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U... 35 0.15
195RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U... 35 0.15
196CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity fa... 35 0.15
197CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity fa... 35 0.15
198CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity fa... 35 0.15
199TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43) 35 0.15
200SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9 35 0.19
201SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr... 35 0.19
202MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156) 35 0.25
203PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 35 0.25
204RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi) 35 0.25
205SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9 35 0.25
206MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2) 35 0.25
207PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi... 35 0.25
208CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 35 0.25
209DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3 34 0.32
210BOLL_MACFA (Q8WP23) Protein boule-like 34 0.32
211BOLL_HUMAN (Q8N9W6) Protein boule-like 34 0.32
212DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4 34 0.32
213DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2 34 0.32
214NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 34 0.32
215PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E... 34 0.32
216RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 34 0.32
217MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos... 34 0.32
218DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1 34 0.32
219RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1 34 0.42
220PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 34 0.42
221U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 aux... 34 0.42
222NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k... 34 0.42
223BOLL_MOUSE (Q924M5) Protein boule-like 34 0.42
224TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43) 34 0.42
225RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 33 0.55
226YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i... 33 0.55
227RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U... 33 0.55
228FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ... 33 0.55
229SXL_CERCA (O61374) Sex-lethal homolog (CCSXL) 33 0.72
230HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34) 33 0.72
231SXL_DROSU (Q24668) Protein sex-lethal 33 0.94
232SXL_DROME (P19339) Protein sex-lethal 33 0.94
233SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr... 33 0.94
234NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2 33 0.94
235SXL_CHRRU (O97018) Sex-lethal homolog 33 0.94
236PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ... 33 0.94
237SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-... 33 0.94
238RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1 32 1.2
239RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1 32 1.2
240RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1 32 1.2
241RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1 32 1.2
242RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain... 32 1.2
243SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein... 32 1.2
244RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 32 1.2
245DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei... 32 1.6
246BOULE_DROME (Q24207) Protein boule 32 1.6
247SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein) 32 1.6
248SXL_MUSDO (O17310) Sex-lethal homolog 32 2.1
249NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2 32 2.1
250ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1 32 2.1
251SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1 32 2.1
252G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei... 32 2.1
253G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei... 32 2.1
254SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1 32 2.1
255SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1 32 2.1
256SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr... 32 2.1
257SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1 32 2.1
258G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei... 32 2.1
259RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact... 31 2.7
260MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos... 31 2.7
261RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 31 2.7
262RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi... 31 2.7
263CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity fact... 31 2.7
264SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1 31 2.7
265SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik... 31 2.7
266PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
267PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
268PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
269PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
270PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
271PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 2.7
272RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi... 31 2.7
273CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity fa... 31 2.7
274CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity fa... 31 2.7
275RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact... 31 3.6
276SXL_MEGSC (O01671) Sex-lethal homolog 31 3.6
277RDRP_PMV (P20951) RNA replication protein (176 kDa protein) (ORF... 31 3.6
278SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr... 31 3.6
279RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p... 31 3.6
280PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ... 31 3.6
281G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei... 30 4.7
282Y891_METTH (O26977) UPF0095 protein MTH891 30 4.7
283OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17) 30 6.1
284CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity fa... 30 6.1
285RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact... 30 6.1
286RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif pro... 30 6.1
287PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ... 30 6.1
288PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ... 30 6.1
289MDE7_SCHPO (O59784) RNA-binding protein mde7 (Mei4-dependent pro... 30 6.1
290Y1437_PASMU (Q9CL11) Hypothetical protein PM1437 30 6.1
291PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ... 30 8.0
292SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4 30 8.0
293SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr... 30 8.0

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 36/82 (43%), Positives = 53/82 (64%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDES 333
           P +P    +A+VGNLS++++E DL DFF    + SIR  ID  T  SRGF +V+FE  ++
Sbjct: 89  PSEPP--FTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVEFETADT 145

Query: 332 LEKAVGMNQSELRGRPVKIAYA 267
           L  A+ ++  +L GRPV+I  A
Sbjct: 146 LSAALALSGEDLMGRPVRITVA 167



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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372
           S R++ T  +++P+ P+ CL  +   LS   +E+DLR+ F +   ++ +    D+RTG S
Sbjct: 103 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 159

Query: 371 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 252
           RGF  V FE  DD  E++E+A GM   EL GR +++ Y+I  RA
Sbjct: 160 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 200



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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372
           S R++ T  +++P+ P+ CL  +   LS   +E+DLR+ F +   ++ +    D+RTG S
Sbjct: 101 SNRRRHTGSRANPD-PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 157

Query: 371 RGFCHVDFE--DD--ESLEKAVGMNQSELRGRPVKIAYAIINRA 252
           RGF  V FE  DD  E++E+A GM   EL GR +++ Y+I  RA
Sbjct: 158 RGFAFVYFERIDDSKEAMERANGM---ELDGRRIRVDYSITKRA 198



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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           G +  YVG+L +NI+E  LR  F+   RI SI+  +D  TG S+G+  + F D E  +KA
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query: 320 V-GMNQSELRGRPVKIAY 270
           +  +N  EL GRP+K+ +
Sbjct: 308 LEQLNGFELAGRPMKVGH 325



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           PE+ D   + +   L+  I  +DL +FF +  ++  +R   D+ +  SRG  +V+F D  
Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVS 205

Query: 335 SLEKAVGMNQSELRGRP--VKIAYAIINRA 252
           S+  A+G+    + G P  V+ + A  NRA
Sbjct: 206 SVRLAIGLTGQRVLGVPIIVQASQAEKNRA 235



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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           G +  YVG+L +NI+E  LR  F+   RI SI+  +D  TG S+G+  + F D E  +KA
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query: 320 V-GMNQSELRGRPVKIAY 270
           +  +N  EL GRP+K+ +
Sbjct: 308 LEQLNGFELAGRPMKVGH 325



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           PE+ D   + +   L+  I  +DL +FF +  ++  +R   D+ +  S+G  +V+F D  
Sbjct: 147 PEERDA-RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205

Query: 335 SLEKAVGMNQSELRGRP--VKIAYAIINRA 252
           S+  A+G+    + G P  V+ + A  NRA
Sbjct: 206 SVPLAIGLTGQRVLGVPIIVQASQAEKNRA 235



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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
 Frame = -1

Query: 641 SDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQK-----KTEFQSDPEKPDGCLSAY 480
           S E A +++ L DG ++G R ++V    +    +R+      ++ +Q   + P      Y
Sbjct: 164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPH---KLY 220

Query: 479 VGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306
           V NLSW ++ + LRD F       S +   D+ +G SRGF  + F   E++  A+  MN+
Sbjct: 221 VANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNE 280

Query: 305 SELRGRPVKIAYA 267
            EL GRP+++  A
Sbjct: 281 VELEGRPLRLNVA 293



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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG LSW+ S+KDL+D+F K   +      +D  TG SRGF  + F+D  S+EK +   +
Sbjct: 78  FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKE 137

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 138 HRLDGRVI 145



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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = -1

Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F K   +
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282
                 +D  TG SRGF  V F++ ES++K +   + +L G+ +
Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167



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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = -1

Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F K   +
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEV 123

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282
                 +D  TG SRGF  V F++ ES++K +   + +L G+ +
Sbjct: 124 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 167



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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = -1

Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF-KSSRI 414
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F K   +
Sbjct: 62  EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282
                 +D  TG SRGF  V F++ ES++K +   + +L G+ +
Sbjct: 122 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 165



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>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG LSW+ S+KDL+D+F K   +      +D  TG SRGF  + F+D  S+EK +   +
Sbjct: 71  FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 130

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 131 HRLDGRVI 138



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>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/74 (36%), Positives = 46/74 (62%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309
           +AYVGNL +N  + D+   FK   I S+R   DK T   +GFC+V+F++ +SL++A+  +
Sbjct: 42  TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101

Query: 308 QSELRGRPVKIAYA 267
            + L  R +++  A
Sbjct: 102 GALLGDRSLRVDIA 115



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>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/74 (36%), Positives = 46/74 (62%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309
           +AYVGNL +N  + D+   FK   I S+R   DK T   +GFC+V+F++ +SL++A+  +
Sbjct: 42  TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD 101

Query: 308 QSELRGRPVKIAYA 267
            + L  R +++  A
Sbjct: 102 GALLGDRSLRVDIA 115



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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           + +  A ++L+ +G +I + F R+     + +S R K+              S +VGNL 
Sbjct: 251 KEESAATQALKRNGAQIADGF-RIRVDLASETSSRDKR--------------SVFVGNLP 295

Query: 464 WNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGR 288
           + + E  + + F     I ++R   DK TG  +GF +V FE+ +S+  A+ +N SEL GR
Sbjct: 296 YKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGR 355

Query: 287 PVKIAYAI 264
            +++  ++
Sbjct: 356 KLRVMRSV 363



 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -1

Query: 605 GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 426
           G K+ +R + ++    T  S+R KK +   + E+     + +VGNL    ++K L+ FFK
Sbjct: 149 GVKVADRKI-LDDTEDTVVSQR-KKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFK 206

Query: 425 S-SRIASIRF 399
              +I S+RF
Sbjct: 207 EYGQIESVRF 216



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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           + +  A K+L+ +G +I   F +RV+    TAS  ++                S +VGNL
Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SVFVGNL 292

Query: 467 SWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291
            + + E  L + F     I ++R   +  TG  RGF +V FE+ +++  A+ +N SEL G
Sbjct: 293 PYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 352

Query: 290 RPVKIAYAI 264
           R +++  ++
Sbjct: 353 RKLRVMRSV 361



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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           + +VGNLS+N +E DL   F     I SIR   D ++G  +GF +V F D +S +K V M
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426

Query: 311 NQSELRGRPVKIAYA 267
           N   + GRP ++ ++
Sbjct: 427 NGHFIAGRPCRLDFS 441



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
 Frame = -1

Query: 572 ERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFA 396
           E+ R    +  ++  +     +  +   + +VG LSWN+ ++ L ++F +   I   R  
Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295

Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMN-QSELRGRPVKI 276
           +D ++G S+G+ +VDFE  E+ + AV  N   E+ GR V +
Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336



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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRF-MRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           + +  A K+L+ +G +I   F +RV+    TAS  ++                S +VGNL
Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKR----------------SVFVGNL 298

Query: 467 SWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291
            + I +  L + F     I ++R   +  TG  RGF +V FE+ +++  A+ +N SEL G
Sbjct: 299 PYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 358

Query: 290 RPVKIAYAI 264
           R +++  ++
Sbjct: 359 RKLRVMRSV 367



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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 375
           SS  Q     Q D ++       +VG LSW  +EK+LRD F K   I SI    D +TG 
Sbjct: 41  SSDNQSAASGQRDDDR-----KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGR 95

Query: 374 SRGFCHVDFEDDESLEKAVGMNQSELRGRPV 282
           SRGF  + F + E+++K    ++  +  + V
Sbjct: 96  SRGFAFIVFTNTEAIDKVSAADEHIINSKKV 126



 Score = 38.9 bits (89), Expect = 0.013
 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L+  IS+++++ +F +   I  +    DK+    +GFC + F+ ++ +   +   +
Sbjct: 139 FVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPK 198

Query: 305 SELRGRPVKIAYA 267
            ++ G+ V +  A
Sbjct: 199 QKIAGKEVDVKRA 211



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>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L  +  E+ +RD+F+    I  I   IDK TG  RGF  V+F+D + ++K V   Q
Sbjct: 125 FVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ 184

Query: 305 SELRGRPVKIAYAI 264
            +L G+ V +  A+
Sbjct: 185 HQLNGKMVDVKKAL 198



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>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
 Frame = -1

Query: 641 SDEVALKSLELDGYKIGNRF--MRVERCRITASSKR-QKKTEFQSDPEKPDGCLSAYVGN 471
           SD+ AL + E +  ++  R   M  E  ++ A  ++   +TE   + ++     S YVGN
Sbjct: 2   SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGN 61

Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 294
           + ++++ ++L+  F S   +  +    DK TG  +GF +++F +   +  A+ +N S L 
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 293 GRPVKI 276
            RP+K+
Sbjct: 122 ERPLKV 127



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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = -1

Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459
           E A K++EL +GY +  R + V +     S +R  + +F+            YVGNL W+
Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPS-------CRVYVGNLPWD 159

Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285
           +    L   F +  ++ S R   D+ TG SRGF  V    +  +  A+  ++   L GR 
Sbjct: 160 VDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219

Query: 284 VKIAYA 267
           V++  A
Sbjct: 220 VRVNVA 225



 Score = 35.0 bits (79), Expect = 0.19
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -1

Query: 524 FQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGD-SRGFCHVDF 348
           F   PE+       +VGNL +++  + L   F ++ +  I   I  R  D SRGF  V  
Sbjct: 48  FSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTM 103

Query: 347 EDDESLEKAVG-MNQSELRGRPVKI 276
              E  EKAV  +N  ++ GR + +
Sbjct: 104 STVEEAEKAVELLNGYDMDGRQLTV 128



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>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)|
          Length = 447

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 34/123 (27%), Positives = 58/123 (47%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           ES++   K+LE     +G R++ V            K  + +S P   DG +   +  L 
Sbjct: 168 ESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVR--LRGLP 225

Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRP 285
           ++ +EKD+ DFF    I  I F +D R     G  +V FE+ E   +A+  ++ E+  R 
Sbjct: 226 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 285

Query: 284 VKI 276
           ++I
Sbjct: 286 IEI 288



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = -1

Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS----IRFAIDKRTGDSRGFCHVDFED 342
           E+ D         L W+ + +D+ +FF   RI +    I F ++ R G  RG   ++ E 
Sbjct: 111 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMES 169

Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIIN 258
           ++ ++KA+  ++  +  R V++ Y I N
Sbjct: 170 EQDVQKALEKHRMYMGQRYVEV-YEINN 196



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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 312
           +A++GNL ++++E  ++DFF+   I+++R   +    D  +GF + +FED +SL  A+ +
Sbjct: 97  TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156

Query: 311 NQSELRGRPVKIAYA 267
           N+  L  R +++  A
Sbjct: 157 NEESLGNRRIRVDVA 171



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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = -1

Query: 563 RITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDK 387
           R+    +   +TE    PE        +VG +   + E DLRD+FK    + S    +DK
Sbjct: 85  RVVEPKRAVPRTEI-GRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDK 143

Query: 386 RTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
            T   RGF  V+F+D + ++K       ++RG+ + +  A+
Sbjct: 144 ETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKAL 184



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>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 33/123 (26%), Positives = 57/123 (46%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           ES++   K+LE     +G R++ V            K  + +  P   DG +   +  L 
Sbjct: 200 ESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVR--LRGLP 257

Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRP 285
           ++ +EKD+ DFF    I  I F +D R     G  +V FE+ E   +A+  ++ E+  R 
Sbjct: 258 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 317

Query: 284 VKI 276
           ++I
Sbjct: 318 IEI 320



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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = -1

Query: 503 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 327
           PD     +VG L+W   E+ L   F     +   +   D+ TG SRGF  V F+D++S++
Sbjct: 4   PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63

Query: 326 KAV-GMNQSELRGRPVKI 276
            A+ GMN  +L GR + +
Sbjct: 64  DAIEGMNGQDLDGRSITV 81



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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = -1

Query: 524 FQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348
           FQS     D   + +VG+L+ N+ ++ LR+ FK      S     D +TG SRG+  V F
Sbjct: 150 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 209

Query: 347 EDDESLEKAV-GMNQSELRGRPVKIAYA 267
              +  + A+  M   +L GRP++I +A
Sbjct: 210 TSQDDAQNAMDSMQGQDLNGRPLRINWA 237



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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDS-RGFCHVDFEDDESLEKAVGM 312
           +A++GNL ++++E+ +++FF+   I+++R   +    +  +GF + +FED +SL  A+ +
Sbjct: 97  TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 156

Query: 311 NQSELRGRPVKIAYA 267
           N+  L  R +++  A
Sbjct: 157 NEESLGNRRIRVDVA 171



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>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           S +VGN++ +++ + + D FK   +I  I    D+ TG  +G+ +++FE     EKA+ +
Sbjct: 65  SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQL 124

Query: 311 NQSELRGRPVKIA 273
           N  EL+G+ + ++
Sbjct: 125 NGGELKGKKIAVS 137



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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           YVGNLSW + +  L + F +  ++   R   D+ +G S+GF  V     + ++KA+  +N
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319

Query: 308 QSELRGRPVKIAYA 267
            ++L GR ++++ A
Sbjct: 320 GADLDGRQIRVSEA 333



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKSS-RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318
           L  +VGNLS+N+    L   F+S+  +  +    DK TG SRGF  V       +E A  
Sbjct: 99  LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158

Query: 317 GMNQSELRGRPVKI 276
             N  E  GRP+++
Sbjct: 159 QFNGYEFEGRPLRV 172



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>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           + +K     S ++GN+ +N + +++ + FK   +I       DK T   + F +++F+D 
Sbjct: 93  EEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDS 152

Query: 338 ESLEKAVGMNQSELRGRPVKI 276
            S+E A+ MN S  R RP+ +
Sbjct: 153 SSIENALVMNGSLFRSRPIVV 173



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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           S YVGN+ +  + ++L   F     +  +    DK +G  +GF +++F D ES+  ++ +
Sbjct: 168 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 227

Query: 311 NQSELRGRPVKIAYAIINR 255
           ++S  RGR +K+     NR
Sbjct: 228 DESLFRGRQIKVIPKRTNR 246



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>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           S YVGN+ +  + ++L   F     +  +    DK +G  +GF +++F D ES+  ++ +
Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231

Query: 311 NQSELRGRPVKIAYAIINR 255
           ++S  RGR +K+     NR
Sbjct: 232 DESLFRGRQIKVIPKRTNR 250



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>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           S YVGN+ +  + ++L   F     +  +    DK +G  +GF +++F D ES+  ++ +
Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231

Query: 311 NQSELRGRPVKIAYAIINR 255
           ++S  RGR +K+     NR
Sbjct: 232 DESLFRGRQIKVIPKRTNR 250



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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
 Frame = -1

Query: 632 VALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNIS 453
           + L    L G  I  +  + E+ R+ A +   +K           G +  YVG+L +NI+
Sbjct: 224 IGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGN--------GGPMRLYVGSLHFNIT 275

Query: 452 EKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVK 279
           E  LR  F+   +I +I    D  TG S+G+  + F D E   +A+  +N  EL GRP++
Sbjct: 276 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335

Query: 278 IAY 270
           + +
Sbjct: 336 VGH 338



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           PE+ D   + +   L+  I  +DL DFF +  ++  +R   D+ +  S+G  +V+F + +
Sbjct: 160 PEERDA-RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 218

Query: 335 SLEKAVGMNQSELRGRPV 282
           S+  A+G+    L G P+
Sbjct: 219 SVPLAIGLTGQRLLGVPI 236



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>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 381
           T  +KR      +   E        +VG L  N  E+ LR++F +   + S++   DK T
Sbjct: 101 TVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160

Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIIN 258
           G  RGF  V+F+D ++++KA+   Q  ++   V +  +I N
Sbjct: 161 GKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYN 201



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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309
           ++G LSW   +  LRD F     +   +  +D+ TG SRGF  V+F D+ +   A+  M+
Sbjct: 38  FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97

Query: 308 QSELRGRPVKI 276
             EL GR +++
Sbjct: 98  GKELNGRHIRV 108



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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = -1

Query: 503 PDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLE 327
           PD     +VG L+W   ++ L   F     +   +   D+ TG SRGF  V F+D++S++
Sbjct: 4   PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63

Query: 326 KAV-GMNQSELRGRPVKI 276
            A+ GMN  +L GR + +
Sbjct: 64  DAIEGMNGQDLDGRSITV 81



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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGD 375
           SS +++K E   +P       + +VG LSW+I ++ L+  F+    +   R   ++ T  
Sbjct: 154 SSNKKQKNEETEEPA------TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207

Query: 374 SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
           SRG+ +VDFE+    EKA+  M   E+ GRP+
Sbjct: 208 SRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 239



 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+   A K++ E+ G +I  R +  +      +    +  +F   P +P   L  ++GNL
Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTL--FLGNL 274

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSE-LR 294
           S+N     + + F K   + S+R      T   +GF +V F + E  +KA+   Q E + 
Sbjct: 275 SFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYID 334

Query: 293 GRPVKIAYA 267
            RPV++ ++
Sbjct: 335 NRPVRLDFS 343



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>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VG L+W  +++ L   F     I   +   D+ TG SRGF  V F+D++S+  A+ GMN
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 308 QSELRGRPVKI 276
             EL GR + +
Sbjct: 69  GQELDGRNITV 79



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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
 Frame = -1

Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP---DGCLSAYVGNL 468
           +EV     + +GY++  R +RV         ++++ + F+         D     YVGNL
Sbjct: 139 EEVEAACQQFNGYELDGRALRVNS---GPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNL 195

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294
           +W + +  L   F +  ++   +   D+ +G SRGF  V +   E +  A+  ++  +L 
Sbjct: 196 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLN 255

Query: 293 GRPVKIAYA 267
           GR ++++ A
Sbjct: 256 GRAIRVSPA 264



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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372
           S R++    +++P+ P+ CL  +   LS   +E+DLR+ F K   IA +    D+++  S
Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158

Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255
           RGF  V FE+ D++ E     N  EL GR +++ ++I  R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198



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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372
           S R++    +++P+ P+ CL  +   LS   +E+DLR+ F K   IA +    D+++  S
Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158

Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255
           RGF  V FE+ D++ E     N  EL GR +++ ++I  R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198



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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDS 372
           S R++    +++P+ P+ CL  +   LS   +E+DLR+ F K   IA +    D+++  S
Sbjct: 102 STRRRHVGNRANPD-PNCCLGVF--GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158

Query: 371 RGFCHVDFED-DESLEKAVGMNQSELRGRPVKIAYAIINR 255
           RGF  V FE+ D++ E     N  EL GR +++ ++I  R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198



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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
 Frame = -1

Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459
           DE      + + Y +  R + V +     S   +        P   +     YVGNL W+
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA-------PRVYEPAFRVYVGNLPWD 254

Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285
           +    L   F +  ++   R   D+ TG SRGF  V   D + L +A+  ++   L GR 
Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 314

Query: 284 VKIAYA 267
           +++  A
Sbjct: 315 IRVNVA 320



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>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           + +K     S ++GN+ +N + +++ + FK    I       DK T   + F +++F+D 
Sbjct: 53  EEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDS 112

Query: 338 ESLEKAVGMNQSELRGRPVKI 276
            S+E A+ MN S  R RP+ +
Sbjct: 113 SSIENALVMNGSLFRSRPIVV 133



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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 345
           Q DP K       ++G LSW  S   LRD+F K   I       D  T  SRGF  V F 
Sbjct: 17  QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

Query: 344 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 252
           D  S++K +G    EL  + +    A   RA
Sbjct: 71  DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101



 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG LS N   +D++ +F+   ++       DK T   RGF  V FE+++ +EK   ++ 
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 172

Query: 305 SELRGRPVK 279
            E+  + V+
Sbjct: 173 HEINNKMVE 181



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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309
           +VG L+W   + +L R F +   +   +   D+ TG SRGF  V F+D++S++ A+  MN
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 308 QSELRGRPVKI 276
             EL GR + +
Sbjct: 69  GKELDGRTITV 79



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>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE 345
           Q DP K       ++G LSW  S   LRD+F K   I       D  T  SRGF  V F 
Sbjct: 17  QHDPGK------MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

Query: 344 DDESLEKAVGMNQSELRGRPVKIAYAIINRA 252
           D  S++K +G    EL  + +    A   RA
Sbjct: 71  DPASVDKVLGQPHHELDSKTIDPKVAFPRRA 101



 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG LS N   +D++ +F+   ++       DK T   RGF  V FE+++ +EK   ++ 
Sbjct: 113 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF 172

Query: 305 SELRGRPVK 279
            E+  + V+
Sbjct: 173 HEINNKMVE 181



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>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEK-----PDGCLSAYVGNLSWNISEKD--LRDFFKS-SRIASIRFA 396
           S +++K    + D  K         ++ +V NL +++ E D  LR  F++   +  IR  
Sbjct: 679 SKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPI 738

Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIA 273
              R GD RG+C+V+F++++S  +A+ M++  + GRP+ ++
Sbjct: 739 FSNR-GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVS 778



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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
 Frame = -1

Query: 638 DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP------------DG 495
           +EV     + +GY++  R +RV       S    +K E  S  E              D 
Sbjct: 139 EEVEAACQQFNGYELDGRALRVN------SGPPPEKRENSSFRENSSFRGGSRGGGSFDS 192

Query: 494 CLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318
               YVGNL+W + +  L   F +  ++   +   D+ +G SRGF  V +   E +  A+
Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 252

Query: 317 -GMNQSELRGRPVKIAYA 267
             ++  +L GR ++++ A
Sbjct: 253 ESLDGVDLNGRAIRVSPA 270



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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426
           G R   + + +    +K+QK      +  +P    + +VGNL++N S  +L+    D F 
Sbjct: 279 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 333

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
            + +A     +D R G +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 334 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 39.3 bits (90), Expect = 0.010
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +S P K     + +V  LS + +E+ L++ F  S  A  R   D+ TG S+GF  VDF  
Sbjct: 568 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 620

Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267
           +E  + A   M   E+ G  V + +A
Sbjct: 621 EEDAKAAKEAMEDGEIDGNKVTLDWA 646



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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           YVGNLSW + +  L   F +  ++   R   D+ +G S+GF  V ++  + ++ A+  ++
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266

Query: 308 QSELRGRPVKIAYA 267
            ++L GR ++++ A
Sbjct: 267 GADLDGRQIRVSEA 280



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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           K+   + D  KP   L+    +VG +  +  E +LRD+F K  +I +I    D+++G  R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D ++++K V      + G   ++  A+
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F K   +       D +T  SR
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V +   E ++ A+     ++ GR V+   A+
Sbjct: 77  GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111



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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
 Frame = -1

Query: 623 KSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKD 444
           K+L+L+G K+    +++E+ +   S K  KK              + +V NL + ++E +
Sbjct: 336 KALQLNGKKLMGLEIKLEKAKSKESLKENKKER---------DARTLFVKNLPYRVTEDE 386

Query: 443 LRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGRPVKIAY 270
           +++ F+++    +R  ++K  G S+G  +++F+ +   EKA+   Q +E+ GR + I Y
Sbjct: 387 MKNVFENA--LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDY 442



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
 Frame = -1

Query: 566 CRITASSKRQKKTEFQSDPEKPDGCLSA-----------YVGNLSWNISEKDLRDFFKSS 420
           C  T    R  + EF S P    G ++A           +V  LS + +E+ LR+ F+ S
Sbjct: 518 CNNTEIEGRAIRLEFSS-PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS 576

Query: 419 RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQSELRGRPVKIAYA 267
              S R   D+ TG S+GF  VDF   E  + A   M   E+ G  V + +A
Sbjct: 577 --ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626



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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = -1

Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459
           E A K++E+ + Y +  R + V +     +++R ++ E    P   +     YVGN+ W 
Sbjct: 188 EEAEKAVEMYNRYDVNGRLLTVNK-----AARRGERPE--RPPRTFEQSYRIYVGNIPWG 240

Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285
           I +  L   F +  ++ S R   D+ TG SRGF  V    +  +  A+  ++   L GR 
Sbjct: 241 IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRT 300

Query: 284 VKIAYA 267
           +++  A
Sbjct: 301 IRVNVA 306



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -1

Query: 539 QKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKR-TGDSRGF 363
           +++ EFQ  PE        +VGNL +++  + L   F+ + +  I   I  R T  SRGF
Sbjct: 124 EEEEEFQEPPEDA----KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGF 179

Query: 362 CHVDFEDDESLEKAVGM-NQSELRGR 288
             V     E  EKAV M N+ ++ GR
Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGR 205



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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426
           G R   + + +    +K+QK      +  +P    + +VGNL++N S  +L+    D F 
Sbjct: 278 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 332

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
            + +A     +D R G +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 333 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378



 Score = 39.3 bits (90), Expect = 0.010
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +S P K     + +V  LS + +E+ L++ F  S  A  R   D+ TG S+GF  VDF  
Sbjct: 567 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 619

Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267
           +E  + A   M   E+ G  V + +A
Sbjct: 620 EEDAKAAKEAMEDGEIDGNKVTLDWA 645



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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLR----DFFK 426
           G R   + + +    +K+QK      +  +P    + +VGNL++N S  +L+    D F 
Sbjct: 277 GKRKKEMAKQKAAPEAKKQKV-----EGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 331

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
            + +A     +D R G +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 332 KNDLA----VVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377



 Score = 39.3 bits (90), Expect = 0.010
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +S P K     + +V  LS + +E+ L++ F  S  A  R   D+ TG S+GF  VDF  
Sbjct: 566 RSQPSK-----TLFVKGLSEDTTEETLKESFDGSVRA--RIVTDRETGSSKGFGFVDFNS 618

Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267
           +E  + A   M   E+ G  V + +A
Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWA 644



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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           K+   + D  KP   L+    +VG +  +  E +LRD+F K  +I +I    D+++G  R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D ++++K V      + G   ++  A+
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F K   +       D +T  SR
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V +   E ++ A+     ++ GR V+   A+
Sbjct: 77  GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111



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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           K+   + D  KP   L+    +VG +  +  E +LRD+F K  +I +I    D+++G  R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D ++++K V      + G   ++  A+
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSR 369
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F K   +       D +T  SR
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 76

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V +   E ++ A+     ++ GR V+   A+
Sbjct: 77  GFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 111



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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -1

Query: 500 DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           D     YVGNLSW + +  L++ F +   +   +   D+ +G SRGF  V +   + +  
Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263

Query: 323 AV-GMNQSELRGRPVKIAYA 267
           A+  +N  +L GR ++++ A
Sbjct: 264 AIDSLNGVDLDGRSIRVSAA 283



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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 32/106 (30%), Positives = 54/106 (50%)
 Frame = -1

Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 414
           G R   + + +    +K+QK     S+P  P    + ++GNL+ N S  +L+        
Sbjct: 281 GKRKKEMTKQKEAPEAKKQKIEG--SEPTTP---FNLFIGNLNPNKSVAELKVAISELFA 335

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
            +   A+D RTG +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 336 KNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           ES E   K+LEL G K+    +++E+ +               D +K     +    NLS
Sbjct: 358 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 404

Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288
           +NI+E +L++ F+ +    +   +  + G S+G  +++F+ +   EK +   Q +E+ GR
Sbjct: 405 FNITEDELKEVFEDA----VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 460

Query: 287 PVKIAY 270
            V + Y
Sbjct: 461 SVSLYY 466



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +S P K     + +V  LS + +E+ L++ F+ S  A  R   D+ TG S+GF  VDF  
Sbjct: 569 RSQPSK-----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNS 621

Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267
           +E  + A   M   E+ G  V + +A
Sbjct: 622 EEDAKAAKEAMEDGEIDGNKVTLDWA 647



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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VG L + ++E D+   F     I +I    DK+TG S+GFC + +ED  S   AV   N
Sbjct: 39  FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98

Query: 308 QSELRGRPVKIAYAIINRA 252
             +++GR +++ +    RA
Sbjct: 99  GIKIKGRTIRVDHVSNYRA 117



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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -1

Query: 506 KPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESL 330
           K  G    ++G L  N++E DLR FF +  ++  +    D+    SRGF  + FE++ S+
Sbjct: 91  KKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV 150

Query: 329 EKAVGMNQSELRGRPVKIAYA 267
           E         L G+ V+I  A
Sbjct: 151 EHVTNERYINLNGKQVEIKKA 171



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG LSW  ++++L R F +   I       +  +G SRGF  V F D  ++   +    
Sbjct: 10  FVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGP 69

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 70  HTLDGRTI 77



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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
 Frame = -1

Query: 635 EVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWN 459
           E A K++EL   Y +  R + V +     S   +    FQ            YVGN+ W+
Sbjct: 149 EEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT-------YRIYVGNIPWD 201

Query: 458 ISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRP 285
           I +  L   F +  ++ S R   D+ +G SRGF  V    +  + +A+  ++   L GR 
Sbjct: 202 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 261

Query: 284 VKI 276
           +++
Sbjct: 262 IRV 264



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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318
           +S YVGNLS+++SE DL   F +   +  ++   D+ TG  RGF  V+ E D     A+ 
Sbjct: 1   MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60

Query: 317 GMNQSELRGRPVKI 276
            ++ +E  GR +K+
Sbjct: 61  ALDGAEWMGRDLKV 74



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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP       S +VGN+ +  +E+ L+D F     + S R   D+ TG  +G+   +++D 
Sbjct: 8   DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

Query: 338 ESLEKAV-GMNQSELRGRPVKI 276
           E+   A+  +N  E  GR +++
Sbjct: 68  ETALSAMRNLNGREFSGRALRV 89



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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 31/106 (29%), Positives = 53/106 (50%)
 Frame = -1

Query: 593 GNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRI 414
           G R   + + +    +K+QK     S+P  P    + ++GNL+ N S  +L+        
Sbjct: 279 GKRKKEMTKQKEAPEAKKQKVEG--SEPTTP---FNLFIGNLNPNKSVNELKFAISELFA 333

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
            +    +D RTG +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 334 KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           ES E   K+LEL G K+    +++E+ +               D +K     +    NLS
Sbjct: 356 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 402

Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288
           +NI+E +L++ F+ +    +   +  + G S+G  +++F+ +   EK +   Q +E+ GR
Sbjct: 403 FNITEDELKEVFEDA----MEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458

Query: 287 PVKIAY 270
            V + Y
Sbjct: 459 SVSLYY 464



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = -1

Query: 542 RQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGF 363
           R  + E Q    +     + +V  LS + +E+ L++ F+ S  A  R   D+ TG S+GF
Sbjct: 551 RTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGF 608

Query: 362 CHVDFEDDESLEKA-VGMNQSELRGRPVKIAYA 267
             VDF  +E  + A   M   E+ G  V + +A
Sbjct: 609 GFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 641



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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -1

Query: 500 DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           D     YVGNLSW + +  L++ F +   +   +   D+ +G SRGF  V +   + +  
Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264

Query: 323 AV-GMNQSELRGRPVKIAYA 267
           A+  +N  +L GR ++++ A
Sbjct: 265 AIDSLNGIDLDGRSIRVSAA 284



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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  N  E +LR++FK   + + +    D      RGF  + FED++S+++AV M+ 
Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175

Query: 305 SELRGRPVKIAYA 267
            ++ G+ V++  A
Sbjct: 176 HDIMGKKVEVKRA 188



 Score = 38.1 bits (87), Expect = 0.022
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L W+ +++ LR +F     +       DK T  SRGF  V F+D   +   +    
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 73  HTLDGRNI 80



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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRT 381
           T   KR    +    P         +VG L  +  E+ LR++FK   +I S+    DK T
Sbjct: 93  TVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDT 152

Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           G  RGF  ++F+D + ++K +      ++ + + +  AI
Sbjct: 153 GKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191



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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  N  E +LR++FK   + + +    D      RGF  + FED++S+++AV M+ 
Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 175

Query: 305 SELRGRPVKIAYA 267
            ++ G+ V++  A
Sbjct: 176 HDIMGKKVEVKRA 188



 Score = 38.1 bits (87), Expect = 0.022
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L W+ +++ LR +F     +       DK T  SRGF  V F+D   +   +    
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 73  HTLDGRNI 80



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>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
 Frame = -1

Query: 638 DEVALKSLELDGYKIGNRFMRVERC---RITASSKRQKKTEFQSDPEKPDGCLSA----Y 480
           +EV++   EL  +   N    +ER    +I  +S  QK     S+ E+    +S     +
Sbjct: 267 EEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLF 326

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMNQ 306
           + NL+++ +E DL+  F    ++  +   IDK+T + +GF ++DF D D+++   + ++ 
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386

Query: 305 SELRGR 288
              +GR
Sbjct: 387 KPFQGR 392



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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D ++P   L+    +VG +  +  E  LRD+F+   +I  I    D+ +G  R
Sbjct: 86  KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D +S++K V      + G   ++  A+
Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180



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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VG L+W  +++DL R F +   +   +   D+ +G SRGF  V F+D++++  A+  MN
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 308 QSELRGRPVKI 276
             EL GR + +
Sbjct: 69  GKELDGRVITV 79



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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D ++P   L+    +VG +  +  E  LRD+F+   +I  I    D+ +G  R
Sbjct: 86  KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D +S++K V      + G   ++  A+
Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180



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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D ++P   L+    +VG +  +  E  LRD+F+   +I  I    D+ +G  R
Sbjct: 86  KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D +S++K V      + G   ++  A+
Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180



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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D ++P   L+    +VG +  +  E  LRD+F+   +I  I    D+ +G  R
Sbjct: 86  KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D +S++K V      + G   ++  A+
Sbjct: 146 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 180



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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VG L+W  S + L + F S   I   +   D+ TG SRGF  V F  + S+  A+  MN
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 308 QSELRGRPVKIAYA 267
             EL GR + +  A
Sbjct: 71  GKELDGRNITVNQA 84



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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S YVG+L  ++SE  L D F     ++SIR   D  T  S G+ +V+F D E+  KA+  
Sbjct: 38  SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97

Query: 314 MNQSELRGRPVKIAYA 267
           +N + ++GR  +I ++
Sbjct: 98  LNYTPIKGRLCRIMWS 113



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
 Frame = -1

Query: 629 ALKSLELDGYK--IGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNI 456
           AL   EL+G K  +G    + ER  +    K+Q +        K  G ++ +V NL  ++
Sbjct: 277 ALNDSELNGEKLYVGRAQKKNERMHVL---KKQYEAYRLEKMAKYQG-VNLFVKNLDDSV 332

Query: 455 SEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVK 279
            ++ L + F      +    +    G S+GF  V F   E   KA+   NQ  + G+P+ 
Sbjct: 333 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 392

Query: 278 IAYA 267
           +A A
Sbjct: 393 VAIA 396



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = -1

Query: 521 QSDPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348
           Q DP  +  G  + ++ NL  +I  K L D F     I S + A D+  G S+GF  V F
Sbjct: 114 QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHF 172

Query: 347 EDDESLEKAV-GMNQSELRGRPVKIA 273
           E++ + ++A+  +N   L G+ + +A
Sbjct: 173 EEEGAAKEAIDALNGMLLNGQEIYVA 198



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>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           ++G L + ++E D+   F     I +I    DK+TG S+GFC + +ED  S   AV   N
Sbjct: 39  FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98

Query: 308 QSELRGRPVKIAYAIINRA 252
             +++GR +++ +    RA
Sbjct: 99  GIKIKGRTIRVDHVSNYRA 117



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>NOP12_CANAL (Q5AHI7) Nucleolar protein 12|
          Length = 454

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
 Frame = -1

Query: 602 YKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS 423
           YK     +  +    T       + +  S P   D   + +VGNL +   E+ L  +F S
Sbjct: 228 YKEKPASIAAKELNATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNS 287

Query: 422 SR---IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL------RGRPVKIAY 270
                + S+R   D +T   +GF  V F+D  S+ KA+ +N   L      +GR ++I+ 
Sbjct: 288 KLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLNDKPLETGTQKKGRKLRISR 347

Query: 269 AIIN 258
           A  N
Sbjct: 348 AKSN 351



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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEKPD----GCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDK 387
           S  +Q+ T+ + +  K D     C   ++G L+W+ +E +LR++F K   +  ++   D 
Sbjct: 136 SPPQQQVTQTKEERSKADLSKESC-KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP 194

Query: 386 RTGDSRGFCHVDFEDDESLEKAV 318
            TG SRGF  + FE   S+++ V
Sbjct: 195 ATGRSRGFGFLSFEKPSSVDEVV 217



 Score = 36.2 bits (82), Expect = 0.085
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  ++  K+  +FF     I   +  +DK TG SRGF  V ++  +++++      
Sbjct: 246 FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF 305

Query: 305 SELRGRPVKIAYA 267
            + + R ++I  A
Sbjct: 306 IDFKDRKIEIKRA 318



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>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 34/127 (26%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
 Frame = -1

Query: 644  ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
            E  E++ K L +D   +G    + E+    A+S ++   +   D  K    ++ +V NL 
Sbjct: 662  EETELSGKCLTID---VGPPSKQKEK----AASLKRDMPKVAHDSSKDS--VTVFVSNLP 712

Query: 464  WNISEKD--LRDFFK-SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 294
            ++I E +  LR  F+    +  IR     R GD RG+C+V+F +++S ++A+ +++  + 
Sbjct: 713  YSIEEPEVKLRPLFEVCGEVVQIRPIFSNR-GDFRGYCYVEFGEEKSAQQALELDRKIVE 771

Query: 293  GRPVKIA 273
            GRP+ ++
Sbjct: 772  GRPMFVS 778



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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
 Frame = -1

Query: 644 ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLS 465
           ES E   K+LEL G K+    +++E+ +               D +K     +    NLS
Sbjct: 355 ESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKVRAARTLLAKNLS 401

Query: 464 WNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ-SELRGR 288
           +NI+E +L++ F+ +    +   +  + G S+G  +++F+ +   EK +   Q +E+ GR
Sbjct: 402 FNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 457

Query: 287 PVKIAY 270
            V + Y
Sbjct: 458 SVSLYY 463



 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
 Frame = -1

Query: 554 ASSKRQKKTEFQSD-----PEKPDGCLSA-----YVGNLSWNISEKDLRDFFKSSRIASI 405
           A  KR+K+   Q +      +K +G  S      ++GNL+ N S  +L+         + 
Sbjct: 276 APGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKND 335

Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
              +D RTG +R F +VDFE  E LEKA+ +   ++ G  +K+
Sbjct: 336 LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -1

Query: 521 QSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +S P K     + +V  LS + +E+ L++ F+ S  A  R   D+ TG S+GF  VDF  
Sbjct: 566 RSQPSK-----TLFVKGLSEDTTEETLKESFEGSVRA--RIVTDRETGSSKGFGFVDFNS 618

Query: 341 DESLEKA-VGMNQSELRGRPVKIAYA 267
           +E  + A   M   E+ G  V + +A
Sbjct: 619 EEDAKAAKEAMEDGEIDGNKVTLDWA 644



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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VG L+W   ++ L   F     +   +   D+ TG SRGF  V F+D+++++ A+ GMN
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 308 QSELRGRPVKI 276
             +L GR + +
Sbjct: 71  GQDLDGRSITV 81



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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D ++P   L+    +VG +  +  E  LRD+F+   +I  I    D+ +G  R
Sbjct: 86  KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D  S++K V      + G   ++  A+
Sbjct: 146 GFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKAL 180



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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315
           S YVG L  +++E  L + F S   +ASIR   D  T  S G+ +V+F + E  EKA+  
Sbjct: 81  SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140

Query: 314 MNQSELRGRPVKIAYA 267
           +N + ++GRP +I ++
Sbjct: 141 LNYTLIKGRPCRIMWS 156



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318
           ++ ++ NL   + ++ L+ +F     I S +   D++ G S+GF  V +   E   KAV 
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVT 422

Query: 317 GMNQSELRGRPVKIAYA 267
            MNQ  L G+P+ +A A
Sbjct: 423 EMNQRMLAGKPLYVALA 439



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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS--SRIASIRFAIDKRTGDSRGFCHVDFE 345
           S P  P+   S +VG+LS   +E DL   F++    + ++R   D  TG SR F  V F 
Sbjct: 185 SIPSTPE--FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFG 242

Query: 344 DDESLEKA-VGMNQSELRGRPVKIAYA 267
           D++   +A + M+    +GR +++AYA
Sbjct: 243 DEDERRRALIEMSGKWFQGRALRVAYA 269



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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  +  E  LR++F+   +I SI    DK++G  RGF  V F+D + ++K V    
Sbjct: 103 FVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKY 162

Query: 305 SELRGRPVKIAYAI 264
             + G   ++  A+
Sbjct: 163 HTINGHNAEVRKAL 176



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>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           + P+ P      ++G LSW  +++ LR++F +   +       D  T  SRGF  V F D
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70

Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252
              ++K +  ++ EL  + +    A   RA
Sbjct: 71  QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100



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>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           + P+ P      ++G LSW  +++ LR++F +   +       D  T  SRGF  V F D
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70

Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252
              ++K +  ++ EL  + +    A   RA
Sbjct: 71  QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100



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>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           + P+ P      ++G LSW  +++ LR++F +   +       D  T  SRGF  V F D
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70

Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA 252
              ++K +  ++ EL  + +    A   RA
Sbjct: 71  QAGVDKVLAQSRHELDSKTIDPKVAFPRRA 100



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>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = -1

Query: 542 RQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRG 366
           R  + +  S P   D     +VGNL++   E+ L R F     I  +R   D +T   +G
Sbjct: 253 RHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKG 312

Query: 365 FCHVDFEDDESLEKAVGMNQSEL-RGRPVKIAYA 267
           F ++ F+D   ++KA+ +N+ ++  GR ++I  A
Sbjct: 313 FAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346



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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A +++E ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ ++ L+D F K     S++   D+ +G S+GF  V FE  E  +KAV  MN  EL 
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKQIYVGRA 266



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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A +++E ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ ++ L+D F K     S++   D+ +G S+GF  V FE  E  +KAV  MN  EL 
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKQIYVGRA 266



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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
 Frame = -1

Query: 626 LKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEK 447
           L   E+ G KI           +  ++ + + ++F   P K       Y+GNL+  ++ +
Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYK------VYIGNLAKTVTNE 198

Query: 446 DLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKI 276
            L+DFF +  ++   +      T  S GF  V F  +E +E A+  +N S L G+ +++
Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257



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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
 Frame = -1

Query: 551 SSKRQK---KTEFQSDPEKPDGC---LSAYVGNLSWNISEKD-----LRDFFKSSRIASI 405
           S+KR+K   KT  ++   K D     LS ++GNL+ +  E D     LR+FF    +   
Sbjct: 206 SAKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLN-STKEFDELKDALREFFSKKNLT-- 262

Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
               D R G+S+ F +VDF  +E +EKA+ +   ++ G  VKI  A+
Sbjct: 263 --IQDIRIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAM 307



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSAYV-GNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFC 360
           +K++   + + P+G     V  NLS++ +E  LR+ F+ +   SIR  I +  G ++GF 
Sbjct: 398 EKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA--TSIR--IPQNQGRAKGFA 453

Query: 359 HVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267
            ++F   E  + A+   N +E+ GR +++ ++
Sbjct: 454 FIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFS 485



 Score = 36.6 bits (83), Expect = 0.065
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQ 306
           +V  LS + +E+ L++ F  S   + R   D+ TG S+GF  VDF   E  + A   M  
Sbjct: 505 FVRGLSEDTTEETLKEAFDGS--VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMED 562

Query: 305 SELRGRPVKIAYA 267
            E+ G  V + +A
Sbjct: 563 GEIDGNKVTLDFA 575



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>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D  +P   L+    +VG +  +  E  LRD+ +S  +I +I    D+++G  R
Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKR 159

Query: 368 GFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           GF  V F+D ++++K V      + G   ++  A+
Sbjct: 160 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 194



 Score = 37.4 bits (85), Expect = 0.038
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDD 339
           DP++P+     ++G LS+  ++  LR+ F+   ++       D +T  SRGF  V +   
Sbjct: 19  DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78

Query: 338 ESLEKAVGMNQSELRGRPVKIAYAI 264
           E ++ ++     ++ GR V+   A+
Sbjct: 79  EEVDASMSARPHKVDGRVVEPKRAV 103



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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A ++++ ++G  + +R + V   +    S+R+++ E+ +   K     + Y+ N 
Sbjct: 146 ETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198

Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ +K LR+ F +     S++  +D  TG SRGF  V++ + E  +KAV  MN  E+ 
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257

Query: 293 GRPVKIAYA 267
           GR + +  A
Sbjct: 258 GRMIYVGRA 266



 Score = 31.6 bits (70), Expect = 2.1
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
 Frame = -1

Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444
           E++G ++  R + V R +     + + K +F+   ++       ++ YV NL   I +  
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309

Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270
           LR +F     I S +   +   G S+GF  V F   E   KAV  MN   +  +P+ +A 
Sbjct: 310 LRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367

Query: 269 A 267
           A
Sbjct: 368 A 368



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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           +VGN+ +++SE+ + + F     + + +  +D  TG  +G+   +F D E+   AV  +N
Sbjct: 10  FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69

Query: 308 QSELRGRPVKIAY 270
            SEL  R +++ +
Sbjct: 70  NSELGPRKIRVEF 82



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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  N  E +L+++F +   +  +    D      RGF  + FED++S+++AV M+ 
Sbjct: 117 FVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 176

Query: 305 SELRGRPVKIAYA 267
            ++ G+ V++  A
Sbjct: 177 HDIMGKKVEVKRA 189



 Score = 38.1 bits (87), Expect = 0.022
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L W+ +++ LR +F     +       DK T  SRGF  V F+D   +   +    
Sbjct: 13  FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 72

Query: 305 SELRGRPV 282
             L GR +
Sbjct: 73  HTLDGRNI 80



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>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   +G  S  V NL++  S   LR  F K  R+  +    D+ T +SRGF  V F D  
Sbjct: 6   PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65

Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255
             E A+  M+ + L GR +++  A   R
Sbjct: 66  DAEDAMDAMDGAVLDGRELRVQMARYGR 93



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>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   +G  S  V NL++  S   LR  F K  R+  +    D+ T +SRGF  V F D  
Sbjct: 6   PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65

Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255
             E A+  M+ + L GR +++  A   R
Sbjct: 66  DAEDAMDAMDGAVLDGRELRVQMARYGR 93



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>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   +G  S  V NL++  S   LR  F K  R+  +    D+ T +SRGF  V F D  
Sbjct: 6   PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65

Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255
             E A+  M+ + L GR +++  A   R
Sbjct: 66  DAEDAMDAMDGAVLDGRELRVQMARYGR 93



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>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   +G  S  V NL++  S   LR  F K  R+  +    D+ T +SRGF  V F D  
Sbjct: 6   PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65

Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255
             E A+  M+ + L GR +++  A   R
Sbjct: 66  DAEDAMDAMDGAVLDGRELRVQMARYGR 93



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>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3)
          Length = 981

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEK-----PDGCLSAYVGNLSWNISEKD--LRDFFKS-SRIASIRFA 396
           S +++K    + D  K         ++ +V NL +++ E D  LR  F++   +  IR  
Sbjct: 697 SKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPI 756

Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIA 273
              R GD RG+ +V+F++++S  +A+ M++  + GRP+ ++
Sbjct: 757 FSNR-GDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVS 796



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>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360
           K    QS  ++P   L  +VGNL +  ++ DL++ F +  +I  +R    + TG  +GF 
Sbjct: 215 KTASIQSSKKEPSSIL--FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272

Query: 359 HVDFEDDESLEKAVGMNQSELR 294
            VDF D ++  KA+ +  +  R
Sbjct: 273 FVDFPDIDTCMKAMELGHNSWR 294



 Score = 38.9 bits (89), Expect = 0.013
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
 Frame = -1

Query: 548 SKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-------------------K 426
           +K  +K E +S  E        +VGNLS++ +++ L DFF                    
Sbjct: 86  AKYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPIT 145

Query: 425 SSRIASIRFAIDK-RTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
           + +I  I   + K +   ++GF +VDF  +++L+ A+  ++  L GR + I
Sbjct: 146 TEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196



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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D  +P   L+    +VG +  +  E  LR++F+   +I  I    D+ +G  R
Sbjct: 87  KRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKR 146

Query: 368 GFCHVDFEDDESLEKAV 318
           GF  V FED +S++K V
Sbjct: 147 GFAFVTFEDHDSVDKIV 163



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>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   +G  S  V NL++  S   LR  F K  R+  +    D+ T +SRGF  V F D  
Sbjct: 7   PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66

Query: 335 SLEKAV-GMNQSELRGRPVKIAYAIINR 255
             E A+  M+ + L GR +++  A   R
Sbjct: 67  DAEDAMDAMDGAVLDGRELRVQMARYGR 94



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>TRA2_DROVI (O02008) Transformer-2 sex-determining protein|
          Length = 272

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
 Frame = -1

Query: 551 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGD 375
           S  RQ+  + +  P+    C+  +   L+ N +++ +R+ F K   I  I+  ID  T  
Sbjct: 88  SRDRQRMRQARDHPQA-SRCIGVF--GLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHR 144

Query: 374 SRGFCHVDFED--DESLEK--AVGMNQSELRGRPVKIAYAIINRA 252
           SRGFC + FE+  D  + K    GM   E+ GR +++ Y+I  RA
Sbjct: 145 SRGFCFIYFENLGDARVAKDACTGM---EVDGRRIRVDYSITQRA 186



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>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           YVG L+  + +K L   F     I  I+  +D  T   RGF  V+FE  E    A+  MN
Sbjct: 9   YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68

Query: 308 QSELRGRPVKIAYA 267
           +SEL GR +++  A
Sbjct: 69  ESELFGRTIRVNLA 82



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>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           YVG L+  + +K L   F     I  I+  +D  T   RGF  V+FE  E    A+  MN
Sbjct: 9   YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68

Query: 308 QSELRGRPVKIAYA 267
           +SEL GR +++  A
Sbjct: 69  ESELFGRTIRVNLA 82



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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSA---YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSR 369
           K+   + D  +P   L+    +VG +  +  E  LRD+F+   +I +I    D+++G  R
Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKR 159

Query: 368 GFCHVDFEDDESLEKAV 318
           GF  V F+D ++++K V
Sbjct: 160 GFAFVTFDDHDTVDKIV 176



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>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE-SLEKAVGMN 309
           +VGNLS+++++  LR  F+    I  IR A  + +G  +GF  +DF+++E S  +    +
Sbjct: 242 FVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKS 301

Query: 308 QSELRGRPVKIAY 270
             ++ GRP+++ Y
Sbjct: 302 CRKIAGRPLRMEY 314



 Score = 33.1 bits (74), Expect = 0.72
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
 Frame = -1

Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-----------------SRIASIRFAIDKRT 381
           +K +     ++GNLS++ ++ DL  FF +                 +R++  R A     
Sbjct: 119 KKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSN 178

Query: 380 G-DSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 276
              ++GFC++ F++ E ++  + +++S L GR + I
Sbjct: 179 AMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214



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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  +  E  LRD+F+   +I +I    D+++G  RGF  V F+D + ++K V    
Sbjct: 115 FVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY 174

Query: 305 SELRGRPVKIAYAI 264
             + G   ++  A+
Sbjct: 175 HTINGHNAEVRKAL 188



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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  +  E  LRD+F+   +I +I    D+++G  RGF  V F+D + ++K V    
Sbjct: 103 FVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY 162

Query: 305 SELRGRPVKIAYAI 264
             + G   ++  A+
Sbjct: 163 HTINGHNAEVRKAL 176



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>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRI-ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           Y+GNL+  ++E D+   F    +   +  + D+ TG+S+GF ++ +ED  S   AV  +N
Sbjct: 34  YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93

Query: 308 QSELRGRPVKI 276
             ++ GR +KI
Sbjct: 94  GFKIGGRALKI 104



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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           ++ N+S+  SE+D R  F     +  +  AID RTG S+GF +V F   E   +A   ++
Sbjct: 313 FIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLD 372

Query: 308 QSELRGRPVKI 276
           +   +GR + I
Sbjct: 373 KQIFQGRLLHI 383



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
 Frame = -1

Query: 455 SEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPV 282
           +E+ LR+FF K   +  ++  + KR G+SR F  + ++  ++ E+AV   N+S +    +
Sbjct: 14  TEEKLREFFSKQGDVTDVKL-MKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72

Query: 281 KIAYA 267
           ++ +A
Sbjct: 73  EVEFA 77



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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A +++E ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ ++ L++ F K     S++   D+ +G S+GF  V FE  E  +KAV  MN  EL 
Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKQIYVGRA 266



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>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           Y+G LS    E  L+D F S + +   R   +K TG SRG+  V+F  ++S   A+  MN
Sbjct: 34  YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93

Query: 308 QSELRGRPVKIAYA 267
             EL G  + +  A
Sbjct: 94  GQELNGFNISVNVA 107



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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           +VG LS++ +E+ L   F K  +I+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 9   FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 69  GKSVDGRQIRVDQA 82



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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           +VG LS++ +E+ L   F K  +I+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 9   FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 69  GKSVDGRQIRVDQA 82



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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A +++E ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFK----SQKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ ++ L++ F K     S++   D+ +G S+GF  V FE  E  +KAV  MN  EL 
Sbjct: 199 GEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKQIYVGRA 266



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>TRA2_DROME (P19018) Transformer-2 sex-determining protein|
          Length = 264

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = -1

Query: 569 RCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAI 393
           R R   SS+ +++     +  +   C+  +   L+ N S+  +R+ F K   I  I+  I
Sbjct: 73  RHRSGRSSRDRERMHKSREHPQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQMVI 130

Query: 392 DKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIINRA 252
           D +T  SRGFC + FE       A    +  E+ GR +++ ++I  RA
Sbjct: 131 DAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRA 178



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>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
 Frame = -1

Query: 584 FMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIAS 408
           F+R+   +  +  K  K   F+S    P      ++G+L   ++E+ L+  FK      S
Sbjct: 67  FLRINNNK--SGHKNGKLKSFESKKLVP-----LFIGDLHETVTEETLKGIFKKYPSFVS 119

Query: 407 IRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAIIN 258
            +  +D  T  S G  +++FED E  EKA+  +N +++ G+ ++I  ++ N
Sbjct: 120 AKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRN 170



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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A ++++ ++G  + +R + V   +    S+R+++ E+ +   K     + Y+ N 
Sbjct: 146 ETHEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198

Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             ++ +K LR+ F +     S++  +D  +G SRGF  V++ + E  +KAV  MN  E+ 
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVN 257

Query: 293 GRPVKIAYA 267
           GR + +  A
Sbjct: 258 GRMIYVGRA 266



 Score = 32.7 bits (73), Expect = 0.94
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
 Frame = -1

Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444
           E++G ++  R + V R +     + + K +F+   ++       ++ YV NL   I +  
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309

Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270
           LR +F     I S +   +   G S+GF  V F   E   KAV  MN   +  +P+ +A 
Sbjct: 310 LRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367

Query: 269 A 267
           A
Sbjct: 368 A 368



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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMN 309
           ++ N+ ++ +E+D +  F     +  +  A+D RTG S+GF +V F+D E    A + ++
Sbjct: 304 FLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363

Query: 308 QSELRGRPVKIAYAIINRA*RLSSW 234
           +   +GR + I  A   +  RL  +
Sbjct: 364 KQIFQGRLLHILPADAKKTHRLDEF 388



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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           +VG LS++ +E+ L   F K  +I+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 69  GKSVDGRQIRVDQA 82



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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           +VG LS++ +E+ L   F K  +I+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 69  GKSVDGRQIRVDQA 82



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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           +VG LS++ +E+ L   F K  +I+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 9   FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 69  GKSVDGRQIRVDQA 82



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>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
 Frame = -1

Query: 563 RITASSKRQKKT--------EFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS--RI 414
           R T + KR++K         E  S+P K      A++ N+ +++  + L+D  K     +
Sbjct: 40  RPTQNEKRKEKNIKRGGNRFEPYSNPTKR---YRAFITNIPFDVKWQSLKDLVKEKVGEV 96

Query: 413 ASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELRGRPVKI 276
             +   +D   G SRG   V+F+ +ES++KA   +N+  L GRP+K+
Sbjct: 97  TYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142



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>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 363
           DP++     + YV  L+ N++  DL DFFK   +           I   +DK TG  +G 
Sbjct: 352 DPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 411

Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267
             V +ED  + + AV   +  + +G  +K++ A
Sbjct: 412 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444



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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +  +  E  LR++F+   +I S     DK++G  RGF  V F D + ++K V    
Sbjct: 103 FVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKY 162

Query: 305 SELRGRPVKIAYAI 264
             + G   ++  A+
Sbjct: 163 HTINGHNAEVRKAL 176



 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           ++G LS+  +E+ LR+F++   ++       D  +  SRGF  V F     ++ A+    
Sbjct: 12  FIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARP 71

Query: 305 SELRGRPVKIAYAI 264
             + GR V+   A+
Sbjct: 72  HTIDGRVVEPKRAV 85



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>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   D   S +VGNL +   E+ L + F     I  +R   D +T   +GF +V F+D +
Sbjct: 272 PAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQ 331

Query: 335 SLEKAVGMNQSELRGR 288
           S+ KA+ +N+  ++ +
Sbjct: 332 SVNKALLLNEKPMKSQ 347



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>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           Y+G++   + E  LR++F     +  +R +  K+TG+S+G+ +V+FE DE
Sbjct: 44  YIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDE 93



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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRT 381
           T   KR    E  + P         +VG L  +++E DL + F     +       DK++
Sbjct: 76  TVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQS 135

Query: 380 GDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAI 264
           G  RGF  V F++ ++ +KA  +    ++G  V++  A+
Sbjct: 136 GKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV 174



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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A ++++ ++G  + +R + V   +    S+R+++ E+ +   K     + Y+ N 
Sbjct: 146 ETQEAANRAIQTMNGMLLNDRKVFVGHFK----SRRERELEYGA---KVMEFTNVYIKNF 198

Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294
             ++ +K L++ F +     S++  +D  +G SRGF  V++ + E  +KAV  MN  E+ 
Sbjct: 199 GEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVN 257

Query: 293 GRPVKIAYA 267
           GR V +  A
Sbjct: 258 GRMVYVGRA 266



 Score = 31.6 bits (70), Expect = 2.1
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
 Frame = -1

Query: 614 ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC---LSAYVGNLSWNISEKD 444
           E++G ++  R + V R +     + + K +F+   ++       ++ YV NL   I +  
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309

Query: 443 LR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAY 270
           LR +F     I S +   +   G S+GF  V F   E   KAV  MN   +  +P+ +A 
Sbjct: 310 LRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367

Query: 269 A 267
           A
Sbjct: 368 A 368



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>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVG-- 474
           E  + ALK +   +G KI    + V + ++   +K + K E    P+K      A V   
Sbjct: 55  EDVQRALKEITTFEGCKIN---VTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADK 111

Query: 473 -------NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV- 318
                  NLS+  SE DL+  F             K  G  RGF  V F++     KA+ 
Sbjct: 112 KARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALK 171

Query: 317 GMNQSELRGRPVKIAYAI 264
           GMN  E++GR V + +A+
Sbjct: 172 GMNMKEIKGRTVAVDWAV 189



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>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           ++ Y+GNL+W  +++DL D  +S   + +  I+F  ++  G S+GF  V    D S  K 
Sbjct: 81  IALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKL 140

Query: 320 VG-MNQSELRGR 288
           +  +++ EL G+
Sbjct: 141 MDLLSKRELHGQ 152



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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIA--SIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GM 312
           ++GNL   I EK L D F +  +   + +   D  TG+S+G+  ++F   ++ + A+  M
Sbjct: 103 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162

Query: 311 NQSELRGRPVKIAYA 267
           N   L  RP+ ++YA
Sbjct: 163 NGQYLCNRPITVSYA 177



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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = -1

Query: 536 KKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFC 360
           +KT+ +   EK +     ++ N+ +   E+D R  F     +  +  A+D RTG S+GF 
Sbjct: 330 QKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFA 389

Query: 359 HVDFEDDESLEKA-VGMNQSELRGRPVKI 276
           +V F+D ++   A V +++   +GR + I
Sbjct: 390 YVLFKDSKNAVNAYVELDKQIFQGRLLHI 418



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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSR-IASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGM 312
           + +V  L+  ++ ++L DFF+ +  +   +   DK +G S+G  +V+F  ++S++ A+ +
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300

Query: 311 NQSELRGRPV 282
           +   L G PV
Sbjct: 301 SGKRLLGLPV 310



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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 303
           YVGNL  ++ EK++ D F   +   I++ +D ++G    F  V+FED    E AV     
Sbjct: 12  YVGNLPGDVREKEVEDIF--HKYGRIKY-VDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68

Query: 302 -ELRGRPVKIAY 270
            E  GR +++ +
Sbjct: 69  YEFDGRRIRVEF 80



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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315
           + Y+ N   ++ ++ L+D F K     S++   D+ +G S+GF  V FE  E  +KAV  
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250

Query: 314 MNQSELRGRPVKIAYA 267
           MN  EL G+ + +  A
Sbjct: 251 MNGKELNGKQIYVGRA 266



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>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = -1

Query: 485 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315
           A++ N+ +++  + L+D  K     +  +   +D   G SRG   V+F+ +ES++KA   
Sbjct: 72  AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 130

Query: 314 MNQSELRGRPVKI 276
           +N+  L GRP+K+
Sbjct: 131 LNKHSLSGRPLKV 143



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>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = -1

Query: 485 AYVGNLSWNISEKDLRDFFKSS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG- 315
           A++ N+ +++  + L+D  K     +  +   +D   G SRG   V+F+ +ES++KA   
Sbjct: 71  AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEV 129

Query: 314 MNQSELRGRPVKI 276
           +N+  L GRP+K+
Sbjct: 130 LNKHSLSGRPLKV 142



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>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   D   S +VGNL +   E+ L + F     I  +R   D +T   +GF +V F+D +
Sbjct: 352 PSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQ 411

Query: 335 SLEKAVGMNQSEL 297
           S+ KA+ +++ ++
Sbjct: 412 SVSKALLLHEKKI 424



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>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12|
          Length = 462

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -1

Query: 575 VERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSR---IASI 405
           V +   T       + +  + P   D   + +VGNL +   E+ L  +F S     + S+
Sbjct: 238 VPKLNATEFEHAHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESV 297

Query: 404 RFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 297
           R   D +T   +GF  V F+D  S+ K++ +N   +
Sbjct: 298 RVIRDAKTNVGKGFALVQFKDTLSVNKSLLLNDKPM 333



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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 342
           +D       +  +VG++    +E+++R +F+    +  +    DKRTG  +G C V +  
Sbjct: 111 TDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170

Query: 341 DESLEKAVGM--NQSELRG--RPVKIAYA 267
            +  ++A+    NQ  L G   PV++ YA
Sbjct: 171 SKDADRAIRALHNQITLPGGTGPVQVRYA 199



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>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333
           ++ NL +   E+D R  F     +  +   I+ +TG  +GF HV FED E+
Sbjct: 304 FLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPEN 354



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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFED-DESLEKAVGMN 309
           ++G L++  +E  L   F K  RI+ +    D+ T  SRGF  V FE+ D++ +  + MN
Sbjct: 8   FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67

Query: 308 QSELRGRPVKIAYA 267
              + GR +++  A
Sbjct: 68  GKSVDGRQIRVDQA 81



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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A K++E ++G  + +R + V R +    S+++++ E  +   K     + Y+ N 
Sbjct: 146 ETQEAADKAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGA---KAKEFTNVYIKNF 198

Query: 467 SWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294
              + ++ L++ F    +  S++   D   G S+GF  V +E  E   KAV  MN  E+ 
Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKIIFVGRA 266



 Score = 33.5 bits (75), Expect = 0.55
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -1

Query: 521 QSDPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF 348
           Q DP  +  G  + ++ NL  +I  K L D F +   I S +   D+    S+G+  V F
Sbjct: 88  QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHF 145

Query: 347 EDDESLEKAV-GMNQSELRGRPV 282
           E  E+ +KA+  MN   L  R V
Sbjct: 146 ETQEAADKAIEKMNGMLLNDRKV 168



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>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma|
           breakpoint region 1 protein)
          Length = 656

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 515 DPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS---------IRFAIDKRTGDSRGF 363
           DP++     + YV  L+ +++  DL DFFK   +           I   +DK TG  +G 
Sbjct: 353 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 412

Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267
             V +ED  + + AV   +  + +G  +K++ A
Sbjct: 413 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 445



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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
 Frame = -1

Query: 641 SDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEF-QSDPEKPDGCLSA------ 483
           +D++A      D   + NR +R++    T  SK+Q++ +  Q  PE+ +   S       
Sbjct: 262 TDDMAKDEAVSDLDWLKNRRVRIKDGADTPVSKQQQQPDTEQQQPEETEVETSQESEEEK 321

Query: 482 -----------YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED- 342
                      ++ N+ +  +E D R  F     +  +  A+D RTG S+GF +V F++ 
Sbjct: 322 SLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNA 381

Query: 341 DESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 234
           D +    V +++   +GR + I  A   ++ +L  +
Sbjct: 382 DNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEF 417



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>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A ++++ ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFFKSSRIA-SIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELR 294
             ++ ++ L+++F     A S++   D   G SRGF  V FE  E  +KAV  MN  +L 
Sbjct: 199 GEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKAIFVGRA 266



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>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           Y+G++  ++ E  L+++F     +  +R +  K+TG+S+G+ +V++E DE
Sbjct: 44  YIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDE 93



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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S YVG+L  +++E  L D F   + + ++R   D  T  S G+ +V+F + E   +A+  
Sbjct: 46  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 104

Query: 314 MNQSELRGRPVKIAYAIINRA*RLS 240
           +N + +R RP++I  +  + + RLS
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLS 129



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>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           Y+G++ ++ +E+ + D   +   + +++   D +TG S+G+  ++F D ES   AV  +N
Sbjct: 21  YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80

Query: 308 QSELRGRPVKIAYA 267
             +L  R +K  Y+
Sbjct: 81  GYQLGSRFLKCGYS 94



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>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           YVG+L   + E  L+ +F+   ++  +R +  K+TG S+G+  V+FE DE
Sbjct: 48  YVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDE 97



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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = -1

Query: 515 DPE-KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFED 342
           DP  +  G  + ++ NL  +I  K L D F S   I S + A+D  +G S+G+  V + +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYAN 173

Query: 341 DESLEKAV 318
           +ES +KA+
Sbjct: 174 EESAQKAI 181



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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMN 309
           Y+G LS+N+ EKD++ FF    R+  +            G+  V+FED    + AV  +N
Sbjct: 5   YIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYELN 56

Query: 308 QSELRGRPVKIAYA 267
             EL G  V + +A
Sbjct: 57  GKELCGERVIVEHA 70



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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309
           YVG L   +SE  L +   ++  + S+    D+ T + +GF  V+F  +E  + A+  +N
Sbjct: 16  YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75

Query: 308 QSELRGRPVKI 276
             +L G+P+K+
Sbjct: 76  MIKLYGKPIKV 86



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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306
           Y+G L+  +SEKD+  FF+      IR  + K      GF  V+F+D    E AV  +N 
Sbjct: 6   YIGRLTSRVSEKDIEHFFRG--YGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNG 58

Query: 305 SELRGRPVKIAYA 267
            EL G  V + Y+
Sbjct: 59  KELGGERVILDYS 71



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>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -1

Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360
           F+ D E+ +  L    + YVGNLS+  +E+ + + F KS  I  I   +DK    + GFC
Sbjct: 25  FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84

Query: 359 HVDFEDDESLEKAV 318
            V++      E A+
Sbjct: 85  FVEYYSRADAENAM 98



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>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -1

Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360
           F+ D E+ +  L    + YVGNLS+  +E+ + + F KS  I  I   +DK    + GFC
Sbjct: 25  FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84

Query: 359 HVDFEDDESLEKAV 318
            V++      E A+
Sbjct: 85  FVEYYSRADAENAM 98



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>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -1

Query: 524 FQSDPEKPDGCL----SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFC 360
           F+ D E+ +  L    + YVGNLS+  +E+ + + F KS  I  I   +DK    + GFC
Sbjct: 25  FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC 84

Query: 359 HVDFEDDESLEKAV 318
            V++      E A+
Sbjct: 85  FVEYYSRADAENAM 98



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>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306
           ++G L+   +EK L+  F      S    I  RT  SRGF  + FE+    + A   MN 
Sbjct: 11  FIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70

Query: 305 SELRGRPVKIAYA 267
             L G+ +K+  A
Sbjct: 71  KSLHGKAIKVEQA 83



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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDF-EDDESLEKAVGMN 309
           ++ N+ ++ +E D +  F     +  +  A+D RTG+S+GF +V F + +E+++  + ++
Sbjct: 328 FLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELD 387

Query: 308 QSELRGRPVKIAYA 267
           +   +GR + I  A
Sbjct: 388 KQIFQGRLLHILAA 401



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>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++R FF  +R  S++    I  RTG S+G+  V F +D  ++K V 
Sbjct: 41  TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV- 97

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 98  ESQINFHGKKLKLGPAI 114



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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
 Frame = -1

Query: 641 SDEVALKSLELDGYKIGNRFMRV--ERCRITASSKRQKKTEFQS-----DPEKPDGCLSA 483
           S+E   K+L+ +   +G R++ V  E+   TA    +  T +Q      + E+ D   S 
Sbjct: 341 SEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSG 400

Query: 482 --YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
             +V NLS+  SE+DL   F +   ++ + + ID  T   +GF  V F   E   KA
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
 Frame = -1

Query: 644  ESDEVALKSLE---LDGYKIGNRFM-RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYV 477
            E  + ALK L+   +DG+K+  R   R  +  +T++ K+Q          K        V
Sbjct: 777  EQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVP--------KKQTTSKILV 828

Query: 476  GNLSWNISEKDLRDFFKS-SRIASIRFAIDKR-TGDSRGFCHVDFEDDESLEKAVG--MN 309
             N+ +  +++++R+ F +   + ++R       TG  RGF  VDF   +  +KA     +
Sbjct: 829  RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 888

Query: 308  QSELRGRPVKIAYA 267
             + L GR + + +A
Sbjct: 889  STHLYGRRLVLEWA 902



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>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = -1

Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345
           DP K D    + YVGNL+   +  D L +FFK    +  +R A D+ T  +R F  V+F 
Sbjct: 57  DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 114

Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267
           D  S+ +A+  N      RP+KI ++
Sbjct: 115 DQNSVPRALAFNGVMFGDRPLKINHS 140



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>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++R FF  +R  S++    I  RTG S+G+  V F +D  ++K V 
Sbjct: 41  TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 98  ESQINFHGKKLKLGPAI 114



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>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++R FF  +R  S++    I  RTG S+G+  V F +D  ++K V 
Sbjct: 41  TVFVGGIDVRMDETEIRSFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 98  ESQINFHGKKLKLGPAI 114



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>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = -1

Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345
           DP K D    + YVGNL+   +  D L +FFK    +  +R A D+ T  +R F  V+F 
Sbjct: 60  DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117

Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267
           D  S+ +A+  N      RP+KI ++
Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143



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>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = -1

Query: 515 DPEKPDGCL-SAYVGNLSWNISEKD-LRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFE 345
           DP K D    + YVGNL+   +  D L +FFK    +  +R A D+ T  +R F  V+F 
Sbjct: 60  DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDE-TQPTR-FAFVEFA 117

Query: 344 DDESLEKAVGMNQSELRGRPVKIAYA 267
           D  S+ +A+  N      RP+KI ++
Sbjct: 118 DQNSVPRALAFNGVMFGDRPLKINHS 143



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>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++R FF  +R  S++    I  RTG S+G+  V F +D  ++K V 
Sbjct: 41  TVFVGGIDVRMDETEIRGFF--ARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIV- 97

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 98  ESQINFHGKKLKLGPAI 114



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>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = -1

Query: 554 ASSKRQKKTEFQSDPEKPDGCLSA----YVGNLSWNISEKDLRDFF-KSSRIASIRFAID 390
           A   R+       DPE     +      ++ NLS+ ++E D+R+ F K   +  +   +D
Sbjct: 283 AEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLD 342

Query: 389 KRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKIAYAIINRA*RLSSW 234
            + G S+GF  + +E   S   A   + +  +GR V I  A   R  +L  +
Sbjct: 343 SK-GHSKGFAMIRYEKPASALAAFQTDGTVFQGRIVHILPAAAKRENKLDEF 393



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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMN 309
           + +VG +   ++E ++R +F+          I  RTG S+G+  V F D+  ++K V  +
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIV-ES 95

Query: 308 QSELRGRPVKIAYAI 264
           Q  + G+ +K+  AI
Sbjct: 96  QISVHGKRLKLGPAI 110



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>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic|
           ovarian carcinoma antigen 1) (APK1 antigen) [Includes:
           Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein
           disulfide-thiol oxidoreductase (EC 1.-.-.-)]
          Length = 598

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333
           E+P GC + +VG L  N +E+ + + F+    I +IR          + FCH+ F ++  
Sbjct: 93  ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 145

Query: 332 LEKAVGMNQSELR 294
           ++KA+ ++   +R
Sbjct: 146 VDKALYLSGYRIR 158



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>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6|
          Length = 548

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           ++ Y+GNL+W  +++DL D   S   + I  I+F  ++  G S+GF  +    + S +K 
Sbjct: 81  IALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKL 140

Query: 320 VGM 312
           + +
Sbjct: 141 MDL 143



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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
 Frame = -1

Query: 644 ESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNL 468
           E+ E A ++++ ++G  + +R + V R +    S+++++ E  +  ++     + Y+ N 
Sbjct: 146 ETQEAAERAIDKMNGMLLNDRKVFVGRFK----SRKEREAELGARAKE---FTNVYIKNF 198

Query: 467 SWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQSELR 294
             +++++ L++ F K     S++   D   G S+GF  V FE  E  +KAV  MN  ++ 
Sbjct: 199 GDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMN 257

Query: 293 GRPVKIAYA 267
           G+ + +  A
Sbjct: 258 GKSMFVGRA 266



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>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic|
           ovarian carcinoma antigen 1) (APK1 antigen) [Includes:
           Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein
           disulfide-thiol oxidoreductase (EC 1.-.-.-)]
          Length = 610

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333
           E+P GC + +VG L  N +E+ + + F+    I +IR          + FCH+ F ++  
Sbjct: 122 ERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR-------KSKKNFCHIRFAEEYM 174

Query: 332 LEKAVGMNQSELR 294
           ++KA+ ++   +R
Sbjct: 175 VDKALYLSGYRIR 187



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>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S +V N++ +   +DLR +F +   I  +   +D  T   RGF +V FED    E A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 314 MNQSELRGRPVKIAYA 267
           +++  + GR ++I +A
Sbjct: 71  LDRKWICGRQIEIQFA 86



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>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S +V N++ +   +DLR +F +   I  +   +D  T   RGF +V FED    E A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 314 MNQSELRGRPVKIAYA 267
           +++  + GR ++I +A
Sbjct: 71  LDRKWICGRQIEIQFA 86



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>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLR-DFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S ++ N++     +DLR +F +   I  +   +D  T   RGF +V FED    E A+  
Sbjct: 11  SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70

Query: 314 MNQSELRGRPVKIAYA 267
           +N+  + GR ++I +A
Sbjct: 71  LNRKWVCGRQIEIQFA 86



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>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 500 DGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           D   +  V NLS +  E++LRD F+    I  +  A DK TG ++GF  V + D +   K
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258

Query: 323 A 321
           A
Sbjct: 259 A 259



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>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 512 PEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDE 336
           P   D     +VG L +   E+ L + F S   +  +R   D +T   +GF +V F+D  
Sbjct: 267 PGAQDHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVN 326

Query: 335 SLEKAVGMN 309
           S+E+A+ +N
Sbjct: 327 SVEQALLLN 335



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>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 426
           R+ER R     +RQ++ E +       +DP  + D   + +V  ++++ +E  LR +F  
Sbjct: 66  RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
              I  I     KR+G  RG+  +++E +  +  A
Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160



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>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQ-------SDPE-KPDGCLSAYVGNLSWNISEKDLR-DFFK 426
           R+ER R     +RQ++ E +       +DP  + D   + +V  ++++ +E  LR +F  
Sbjct: 66  RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
              I  I     KR+G  RG+  +++E +  +  A
Sbjct: 126 YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160



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>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           ++ Y+GNL+W  +++DL +   S   + I  I+F  ++  G S+GF  V    + S +K 
Sbjct: 81  IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140

Query: 320 VG-MNQSELRGR 288
           +  + + EL G+
Sbjct: 141 MDLLPKRELHGQ 152



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>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           ++ Y+GNL+W  +++DL +   S   + I  I+F  ++  G S+GF  V    + S +K 
Sbjct: 81  IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140

Query: 320 VG-MNQSELRGR 288
           +  + + EL G+
Sbjct: 141 MDLLPKRELHGQ 152



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>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = -1

Query: 491 LSAYVGNLSWNISEKDLRDFFKS---SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           ++ Y+GNL+W  +++DL +   S   + I  I+F  ++  G S+GF  V    + S +K 
Sbjct: 81  IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 140

Query: 320 VG-MNQSELRGR 288
           +  + + EL G+
Sbjct: 141 MDLLPKRELHGQ 152



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>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318
           L W  +E+DL+D+F +   +  ++   D +TG S+GF  V F + E+  K +
Sbjct: 111 LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162



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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +D    +G    YVGNL  ++ EKDL D F+K  RI  I     K       F  V FED
Sbjct: 5   ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61

Query: 341 DESLEKAV 318
               E A+
Sbjct: 62  PRDAEDAI 69



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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +D    +G    YVGNL  ++ EKDL D F+K  RI  I     K       F  V FED
Sbjct: 5   ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 61

Query: 341 DESLEKAV 318
               E A+
Sbjct: 62  PRDAEDAI 69



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>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 312
           ++ N+ +++  + ++D  +  ++  + +        G SRG   V+F+D+E ++KA+  M
Sbjct: 103 FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161

Query: 311 NQSELRGRPVKI 276
           N+ +L GRP+ I
Sbjct: 162 NKYDLSGRPLNI 173



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309
           +V NL ++++ + L++ F  S+   + FA I    G S+G   V F+  ES EKA   MN
Sbjct: 526 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMN 583

Query: 308 QSELRGRPVKI 276
             ++ GR + +
Sbjct: 584 GIKISGREIDV 594



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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = -1

Query: 509 EKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDES 333
           EK     + YV N + +  ++ L++FF+   +I S +  + K  G S+GF  V FE  E+
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEA 235

Query: 332 LEKAV-GMNQSEL-RGRPVKIAYA 267
            E AV  +N  ++  G+ + +A A
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARA 259



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>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
 Frame = -1

Query: 545 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSR 369
           + +   E +  P++       +V ++     E ++++ F     I +I   +D+RTG S+
Sbjct: 55  RNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK 114

Query: 368 GFCHVDFE-DDESLEKAVGMNQSELRGRPVKIAYAII 261
           G+  V++E   ++L     +N +E+ G+ +++ +  +
Sbjct: 115 GYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151



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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 518 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRIASIRFAIDKRTGDSRGFCHVDFED 342
           +D    +G    YVGNL  ++ EKDL D F+K  RI  I     K       F  V FED
Sbjct: 6   ADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFED 62

Query: 341 DESLEKAV 318
               E A+
Sbjct: 63  PRDAEDAI 70



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>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAV-GM 312
           ++ N+ +++  + ++D  +  ++  + +        G SRG   V+F+D+E ++KA+  M
Sbjct: 94  FISNIPYDMKWQAIKDLMRE-KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152

Query: 311 NQSELRGRPVKI 276
           N+ +L GRP+ I
Sbjct: 153 NKYDLSGRPLNI 164



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFA-IDKRTGDSRGFCHVDFEDDESLEKAVG-MN 309
           +V NL ++++ + L++ F  S+   + FA I    G S+G   V FE  ES EKA   MN
Sbjct: 517 FVRNLPFDLTWQKLKEKF--SQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMN 574

Query: 308 QSELRGRPVKI 276
             ++ GR + +
Sbjct: 575 GIKISGREIDV 585



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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           S Y G+L   ++E  L D FK  + + S+R   D+    S G+ +++F +     +A+  
Sbjct: 50  SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEA 108

Query: 314 MNQSELRGRPVKIAYAIINRA*RLS 240
           +N + L  RP++I  +  + + RLS
Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLS 133



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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = -1

Query: 557 TASSKRQKKTEFQS-DPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR 384
           T++S RQ   +  S DP       + +VG L+ N+SEKDL+  F+   RI +I+    K 
Sbjct: 278 TSTSNRQPNQDLCSMDPLNT----TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKG 333

Query: 383 TGDSRGFCHVDFEDDESLEKAVGMNQSELRG 291
            G       V + +  + EKA+   Q  L G
Sbjct: 334 CG------FVQYSEKSAAEKAINTMQGALVG 358



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>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 41  TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 99  -SQIHFHGKKLKLGPAI 114



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>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           +VG + +  +E DLR FF           ++ R G S+G+  V FE  E  +K
Sbjct: 36  FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88



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>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           +VG + +  +E DLR FF           ++ R G S+G+  V FE  E  +K
Sbjct: 36  FVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQK 88



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>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 264 -SQIHFHGKKLKLGPAI 279



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 41  TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 99  -SQIHFHGKKLKLGPAI 114



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>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 41  TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 99  -SQIHFHGKKLKLGPAI 114



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>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = -1

Query: 554 ASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFA---IDKR 384
           AS  ++ K + Q+  E      S +V N+ ++ +E+ L   F  S+  S+++A   IDK 
Sbjct: 273 ASKNKESKRKAQNKRED----FSVFVRNVPYDATEESLAPHF--SKFGSVKYALPVIDKS 326

Query: 383 TGDSRGFCHVDFEDDESLEKAV 318
           TG ++G   V F+D  +  + +
Sbjct: 327 TGLAKGTAFVAFKDQYTYNECI 348



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>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEK----------------PDGCLSAYVGNLSWNISEKDLRDFF- 429
           T+  K Q++ E +++ E                 P+  L  +V  L+    ++DL   F 
Sbjct: 208 TSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVL--FVCKLNPVTQDEDLELIFS 265

Query: 428 KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL 297
           +  +I S +   DK TGDS  +  ++F++ ES+EKA    Q+ L
Sbjct: 266 RFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVL 309



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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLE---KAVG 315
           ++G L +++ E +L+ +F K   I  IR   DK T  S+G+  + F+D  S +   K +G
Sbjct: 110 FIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIG 169

Query: 314 MNQSELRGRPVKIAYAIIN 258
           ++    RG  +K    I++
Sbjct: 170 VH----RGIQIKDRICIVD 184



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>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -1

Query: 560 ITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKR 384
           +T    R KK + +   +   G +  Y+G+L   +SE  + ++      I+  R +  KR
Sbjct: 26  LTQIQGRTKKPQQKKKEKLNRGVV--YLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKR 83

Query: 383 TGDSRGFCHVDFEDDE 336
           TG+S+G+  V+FE ++
Sbjct: 84  TGNSKGYAFVEFESED 99



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>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 371 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 428

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 429 -SQIHFHGKKLKLGPAI 444



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 206 TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 263

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 264 -SQIHFHGKKLKLGPAI 279



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIASIRFA--IDKRTGDSRGFCHVDFEDDESLEKAVG 315
           + +VG +   + E ++   F   R  S++    I  RTG S+G+  V F +D  ++K VG
Sbjct: 41  TVFVGGIDARMDETEIGSCF--GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG 98

Query: 314 MNQSELRGRPVKIAYAI 264
            +Q    G+ +K+  AI
Sbjct: 99  -SQIHFHGKKLKLGPAI 114



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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = -1

Query: 569 RCRITASSKRQKKTEFQSDPEKPDGC-LSAYVGNLSWNISEKDLRDFFKS-SRIASIRFA 396
           R R  + SK+ K+ E +     P       ++G L+ N+++  + + F +  +I  I   
Sbjct: 111 RRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMP 170

Query: 395 IDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
           +D+     S+G+ +V+FE  E  EKA+  M+  ++ G+ +
Sbjct: 171 VDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210



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>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 395 IDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPVKIAYA 267
           +D +T   RGF  V+FE+ E    A+  MN+SE+ GR +++  A
Sbjct: 3   MDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46



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>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor|
           59 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF59)
          Length = 517

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = -1

Query: 539 QKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGF 363
           QK+++  +  +  D     Y+ NL  N+ E  + +  K    + S +   +   G S+GF
Sbjct: 294 QKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGF 353

Query: 362 CHVDFEDDESLEKAV-GMNQSELRGRPVKIAYAII 261
           C  +F++    E A+ G++  +  G  +   +A +
Sbjct: 354 CFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACV 388



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>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDF 348
           YVGNLS+  +E+ + + F KS  +  I   +DK    + GFC V++
Sbjct: 35  YVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEY 80



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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           +VG + +  +E DLR FF           ++ R G S+G+  + FE  E  +K
Sbjct: 36  FVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQK 88



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>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 470 LSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318
           L W  +E+DL+++F +   +  ++   D +TG S+GF  V F + E+  K +
Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162



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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -1

Query: 500 DGCLSAYVGNLSWNISEKDL-RDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEK 324
           +G  S  + NLS+  +  DL R F +   I  +    DK +  S+GF  V F +    E 
Sbjct: 16  NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75

Query: 323 AVGMNQSEL-RGRPVKIAYAIINR 255
           A+     +L  GR +++  A  +R
Sbjct: 76  ALDRTDGKLVDGRELRVTLAKYDR 99



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>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA-VGMNQ 306
           +VGNL  +++++ L   F           +  R G +RGF  V F+D +   KA    N 
Sbjct: 33  FVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNG 92

Query: 305 SELRGRPVKIAYA 267
             +  RPVK++ A
Sbjct: 93  KYIGSRPVKLSRA 105



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>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQS---DPEKP-----DGCLSAYVGNLSWNISEKDLR-DFFK 426
           R+ER R     +RQ+  E +    DP        D   + +V  ++++ +E  LR +F  
Sbjct: 66  RMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV 125

Query: 425 SSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
              I  I    +KR+G  RG+  +++E +  +  A
Sbjct: 126 YGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSA 160



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>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEK---PDGCLSAYVGNLSWNISEKDLRDFFKSSRIASIRFAIDK 387
           TA S        Q DP     PDG    +V N+ +   + DL+  F+   + S    I  
Sbjct: 128 TAGSTNGSAAVTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN 187

Query: 386 RTGDSRGFCHVDFEDDESLEKA-VGMNQSELRGRPVKI 276
             G S+GF  V  E  +  E+A   ++ S + GR +++
Sbjct: 188 ERG-SKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224



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>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -1

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306
           V  L  ++++++L   F++   I + R   D +TG S G+  VDF  +   ++A+  +N 
Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNG 173

Query: 305 SELRGRPVKIAYA 267
             +R + +K++YA
Sbjct: 174 ITVRNKRLKVSYA 186



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>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFFKSSRIAS-IRFAIDKRTGDSRGFCHVDFEDDESLEKAV 318
           S +VGNL+++ + +DL +FF  S+I   +R  I    G  RG   V+F + + +++A+
Sbjct: 137 SIFVGNLTYDSTPEDLTEFF--SQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAI 192



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>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -1

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306
           V  L  ++++++L   F++   I + R   D +TG S G+  VDF  +   ++A+  +N 
Sbjct: 131 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 190

Query: 305 SELRGRPVKIAYA 267
             +R + +K++YA
Sbjct: 191 ITVRNKRLKVSYA 203



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>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -1

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVG-MNQ 306
           V  L  ++++++L   F++   I + R   D +TG S G+  VDF  +   ++A+  +N 
Sbjct: 129 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188

Query: 305 SELRGRPVKIAYA 267
             +R + +K++YA
Sbjct: 189 ITVRNKRLKVSYA 201



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>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
 Frame = -1

Query: 614 ELDGYKIGNRFMRVERCRITA-------------SSKRQKKTEFQSDPEKPDGCLSAYVG 474
           ELDG ++ +  + +E  R  +             SS+R +     + P + +  L   V 
Sbjct: 56  ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRL--IVE 113

Query: 473 NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSEL 297
           NLS  +S +DL+DF + +    + FA   R   + G   V+F     L+ A+  ++  E+
Sbjct: 114 NLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VEFASYGDLKNAIEKLSGKEI 169

Query: 296 RGRPVKI 276
            GR +K+
Sbjct: 170 NGRKIKL 176



 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           GC   ++G L+    EKD+  FFK   RI  I           RGF  V+FED    + A
Sbjct: 3   GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53

Query: 320 V-GMNQSELRGRPVKIAYA 267
           V  ++  EL    V I +A
Sbjct: 54  VYELDGKELCSERVTIEHA 72



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>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE-DDESLEKAVGMN 309
           YVGNLS+  SE+ L + F K   I  I   +D+      GFC + ++   E+L     ++
Sbjct: 49  YVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYLS 108

Query: 308 QSELRGRPVKI 276
           +++L  R + I
Sbjct: 109 KTKLDDREITI 119



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>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = -1

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306
           V  L  ++++++L   F++   I + R   D +TG S G+  VDF  +   + A+  +N 
Sbjct: 89  VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNG 148

Query: 305 SELRGRPVKIAYA 267
             +R + +K++YA
Sbjct: 149 VTVRNKRLKVSYA 161



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>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +V  L+   +++DL   F +  +I S     D++TGDS  +  ++FED +S E+A     
Sbjct: 256 FVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMD 315

Query: 305 SEL 297
           S L
Sbjct: 316 SVL 318



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>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
 Frame = -1

Query: 614 ELDGYKIGNRFMRVERCRITA-------------SSKRQKKTEFQSDPEKPDGCLSAYVG 474
           ELDG ++ +  + +E  R  +             SS+R +     + P + +  L   V 
Sbjct: 56  ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRL--IVE 113

Query: 473 NLSWNISEKDLRDFFKSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQSEL 297
           NLS  +S +DL+DF + +    + FA   R   + G   V+F     L+ A+  ++  E+
Sbjct: 114 NLSSRVSWQDLKDFMRQA--GEVTFADAHRPKLNEGV--VEFASYGDLKNAIEKLSGKEI 169

Query: 296 RGRPVKI 276
            GR +K+
Sbjct: 170 NGRKIKL 176



 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 497 GCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKA 321
           GC   ++G L+    EKD+  FFK   RI  I           RGF  V+FED    + A
Sbjct: 3   GC-RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDA 53

Query: 320 V-GMNQSELRGRPVKIAYA 267
           V  ++  EL    V I +A
Sbjct: 54  VYELDGKELCSERVTIEHA 72



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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402
           R  R +     + +K+ + +S   KP      ++G L+ N+++  + + F +  +I  I 
Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191

Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
             +++     S+G+ +V+FE+ +  EKA+  M+  ++ G+ +
Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233



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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402
           R  R +     + +K+ + +S   KP      ++G L+ N+++  + + F +  +I  I 
Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191

Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
             +++     S+G+ +V+FE+ +  EKA+  M+  ++ G+ +
Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233



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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402
           R  R +     + +K+ + +S   KP      ++G L+ N+++  + + F +  +I  I 
Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191

Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
             +++     S+G+ +V+FE+ +  EKA+  M+  ++ G+ +
Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233



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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402
           R  R +     + +K+ + +S   KP      ++G L+ N+++  + + F +  +I  I 
Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191

Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
             +++     S+G+ +V+FE+ +  EKA+  M+  ++ G+ +
Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233



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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = -1

Query: 578 RVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIR 402
           R  R +     + +K+ + +S   KP      ++G L+ N+++  + + F +  +I  I 
Sbjct: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT---KVHIGRLTRNVTKDHIMEIFSTYGKIKMID 191

Query: 401 FAIDKRTGD-SRGFCHVDFEDDESLEKAV-GMNQSELRGRPV 282
             +++     S+G+ +V+FE+ +  EKA+  M+  ++ G+ +
Sbjct: 192 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233



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>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of|
           deformed) (52-kDa bracketing protein) (B52 protein)
          Length = 375

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKSSRIASIRFAIDKRTGD---SRGFCHVDFEDDESLEKAV-G 315
           YVG L + + E+DL  FFK             RT D     G+  V+FED    + AV  
Sbjct: 6   YVGGLPYGVRERDLERFFKGY----------GRTRDILIKNGYGFVEFEDYRDADDAVYE 55

Query: 314 MNQSELRGRPVKI 276
           +N  EL G  V +
Sbjct: 56  LNGKELLGERVVV 68



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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG L ++ ++  LR +F+    I       D++TG SRG+  V   D  + E+A     
Sbjct: 14  FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 73

Query: 305 SELRGRPVKIAYAII 261
             + GR   +  A +
Sbjct: 74  PIIDGRKANVNLAYL 88



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>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +   + E ++R+FF K   +  ++  I  R G  +G+  V F +D  ++  V    
Sbjct: 50  FVGGIDMKVDENEIREFFAKYGSVKEVKI-ITYRGGICKGYGFVYFSEDVDIQTIVDQPI 108

Query: 305 SELRGRPVKIAYAII 261
           S  +G+ +K+  AI+
Sbjct: 109 S-FKGKKLKLGPAIM 122



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>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQ 306
           +VG +S + +E DL   F +   + S +  +D R G S+G+  V FE ++  ++     +
Sbjct: 36  FVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTFETEQEAQRLQADGE 94

Query: 305 S-ELRGRPVKIAYAI 264
              LR R + IA AI
Sbjct: 95  CVVLRDRKLNIAPAI 109



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>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 488 SAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-G 315
           + YVGNL  +I E+++ D F K   +  I   +  R     G+  V+F+D    E A+ G
Sbjct: 8   TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR---PPGYAFVEFDDARDAEDAIHG 64

Query: 314 MNQSELRGRPVKIAYA 267
            +  +  G  +++  A
Sbjct: 65  RDGYDFDGHRLRVELA 80



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>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = -1

Query: 479 VGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAV-GMNQ 306
           V  L  ++++++L   F++   I + R   D +TG S G+  VDF  +   + A+  +N 
Sbjct: 106 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNG 165

Query: 305 SELRGRPVKIAYA 267
             +R + +K++YA
Sbjct: 166 ITVRNKRLKVSYA 178



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>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2|
          Length = 208

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -1

Query: 482 YVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRTGDSRGFCHVDFE-DDESLEKAVGMN 309
           YVGNLS+  SE+ + + F K   I  I   +D+      GFC + +   DE+L     ++
Sbjct: 49  YVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKYLS 108

Query: 308 QSELRGRPVKI 276
            ++L  + + I
Sbjct: 109 DTKLDEKTITI 119



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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 557 TASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRFAIDKRT 381
           T   KR    + ++  E        YV  +  + +E  L ++F K   +      +DK T
Sbjct: 92  TVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 151

Query: 380 GDSRGFCHVDFEDDESLEKAV 318
              RGF  V F+D +S+++ V
Sbjct: 152 QKPRGFGFVTFDDHDSVDQCV 172



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 506 KPDGCLSAYVGNLSWNISEKDLRDFFKS-SRIASIRFAIDKRTGDSRGFCHVDFEDDESL 330
           +P+     +VG L+ N ++  +R+F+     I  I    D  T  SRGF  V F     +
Sbjct: 18  EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77

Query: 329 EKAVGMNQSELRGRPV 282
           + A+      + G+ V
Sbjct: 78  DAAMKQRPHIIDGKTV 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,233,928
Number of Sequences: 219361
Number of extensions: 1650514
Number of successful extensions: 4453
Number of sequences better than 10.0: 293
Number of HSP's better than 10.0 without gapping: 4259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4398
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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