Clone Name | rbah61o11 |
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Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 244 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 303 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 1303807 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303748 Query: 304 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 363 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 1303747 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303688 Query: 364 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 417 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303687 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303634 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 540 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 590 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 1303511 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 1303461
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 244 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 303 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 1303805 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303746 Query: 304 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 363 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 1303745 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303686 Query: 364 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 417 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303685 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303632 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 540 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 590 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 1303509 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 1303459
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 244 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 303 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 108709 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 108650 Query: 304 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 363 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 108649 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 108590 Query: 364 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 417 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 108589 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 108536 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 540 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 590 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 108413 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 108363
>dbj|AK066740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B19, full insert sequence Length = 1092 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 244 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 303 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 900 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 841 Query: 304 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 363 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 840 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 781 Query: 364 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 417 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 780 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 727 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 540 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgttaccaatttt 599 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 604 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgttgccaatttt 545 Query: 600 gtatccatcaagctccagagatttca 625 | |||| |||||||| ||||| |||| Sbjct: 544 gaatccgtcaagctcaagagacttca 519
>ref|XM_468587.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 131 bits (66), Expect = 3e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 292 ccgcgcagttcagattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaa 351 ||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| Sbjct: 716 ccgcgcagttcagattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaa 657 Query: 352 tcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgat 411 |||||||| || || ||||||||||| ||||||||||||| ||| ||||| ||||| ||| Sbjct: 656 tcaacatgacaaaaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgat 597 Query: 412 gcaatc 417 | |||| Sbjct: 596 gaaatc 591 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 540 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgttaccaatttt 599 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 468 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgttgccaatttt 409 Query: 600 gtatccatcaagctccagagatttca 625 | |||| |||||||| ||||| |||| Sbjct: 408 gaatccgtcaagctcaagagacttca 383
>gb|BT018692.1| Zea mays clone EL01N0512E07.d mRNA sequence Length = 1700 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Minus Query: 349 aaatcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttatt 408 ||||||||||| || |||||| | ||| | || ||||| ||||| ||| | || |||| | Sbjct: 227 aaatcaacatgacaaaagccatgggaacccccagttcttttgtcaatgacgaaccttact 168 Query: 409 gatgcaatccttgacgatttgaagaaatctctcaaatccttctcactgatgttccatgag 468 |||||||| | || || |||||||||||| ||| || || ||| ||| ||||||| || Sbjct: 167 aatgcaatcttcgatgagctgaagaaatctcgcaagtcattttcaatgacgttccataag 108 Query: 469 agattgccgacataagccgagaggcagcc 497 ||||| || |||||||||||||||||||| Sbjct: 107 agattaccaacataagccgagaggcagcc 79
>gb|AY110713.1| Zea mays CL7875_1 mRNA sequence Length = 655 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 459 gttccatgagagattgccgacataagccgagaggcagccatcgggcttct 508 |||||||||||| ||||| ||||| |||||||||||||| |||| ||||| Sbjct: 553 gttccatgagaggttgccaacatatgccgagaggcagccttcggacttct 602
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence Length = 151183 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 tgcagcccaaaagtatctgtt 108 ||||||||||||||||||||| Sbjct: 97827 tgcagcccaaaagtatctgtt 97847
>dbj|AB064368.1| Triakis scyllium FI mRNA for complement factor I, complete cds Length = 2176 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 gcaactgtgctggacagaaca 55 ||||||||||||||||||||| Sbjct: 1055 gcaactgtgctggacagaaca 1075
>gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, complete sequence Length = 218156 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 tgcatctttcaaccctcata 582 |||||||||||||||||||| Sbjct: 57089 tgcatctttcaaccctcata 57070
>gb|AC109298.19| Mus musculus chromosome 3, clone RP24-271A4, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ttctggcaaatatatggcatgttt 147 |||||||||||||| ||||||||| Sbjct: 169973 ttctggcaaatatagggcatgttt 169996
>ref|XM_363563.1| Magnaporthe grisea 70-15 hypothetical protein (MG01489.4) partial mRNA Length = 2940 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ctcgaaatcaacatggcaga 364 |||||||||||||||||||| Sbjct: 2164 ctcgaaatcaacatggcaga 2183
>gb|AC147132.3| Mus musculus BAC clone RP24-189K3 from chromosome 7, complete sequence Length = 189225 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cataaacctgttaccaattt 598 |||||||||||||||||||| Sbjct: 91549 cataaacctgttaccaattt 91568
>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence Length = 196114 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cataaacctgttaccaattt 598 |||||||||||||||||||| Sbjct: 4367 cataaacctgttaccaattt 4386
>gb|AY226051.1| Suberites fuscus alpha-tubulin mRNA, partial cds Length = 1152 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tggcaaatatatggcatgtt 146 |||||||||||||||||||| Sbjct: 861 tggcaaatatatggcatgtt 880
>emb|AL138744.41| Human DNA sequence from clone RP13-257M1 on chromosome Xp11.23-11.4 Contains part of the UTX gene for ubiquitously transcribed tetratricopeptide repeat gene X chromosome and a CpG island, complete sequence Length = 143968 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 atttgaagaaatctctcaaa 444 |||||||||||||||||||| Sbjct: 31431 atttgaagaaatctctcaaa 31412
>gb|AC114933.2| Homo sapiens chromosome 5 clone CTD-2023M8, complete sequence Length = 177958 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caatgtgcatgatttttaag 73 |||||||||||||||||||| Sbjct: 10478 caatgtgcatgatttttaag 10459
>emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and the Trim32 gene for tripartite motif protein 32, complete sequence Length = 158960 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tggtctatagaaacataatg 166 |||||||||||||||||||| Sbjct: 67575 tggtctatagaaacataatg 67556
>emb|AJ717314.1| Gigaspora margarita partial atub gene for alpha tubulin, exon 2 Length = 1380 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tggcaaatatatggcatgtt 146 |||||||||||||||||||| Sbjct: 1080 tggcaaatatatggcatgtt 1099
>emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in linkage group 5, complete sequence Length = 134768 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cagaacaatgtgcatgattt 68 |||||||||||||||||||| Sbjct: 78856 cagaacaatgtgcatgattt 78875
>gb|AC091865.3| Homo sapiens chromosome 5 clone CTD-2354N18, complete sequence Length = 87256 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 caatgtgcatgatttttaag 73 |||||||||||||||||||| Sbjct: 4620 caatgtgcatgatttttaag 4639
>gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N22, complete sequence Length = 150162 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 caatgtgcatgatttttaag 73 |||||||||||||||||||| Sbjct: 43773 caatgtgcatgatttttaag 43792
>emb|Z78015.1|CER02D5 Caenorhabditis elegans Cosmid R02D5, complete sequence Length = 41076 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 atttcagggcaacttcatct 639 |||||||||||||||||||| Sbjct: 1887 atttcagggcaacttcatct 1906
>gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, complete sequence Length = 209693 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 tgcatctttcaaccctcata 582 |||||||||||||||||||| Sbjct: 126627 tgcatctttcaaccctcata 126646 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,717,130 Number of Sequences: 3902068 Number of extensions: 5717130 Number of successful extensions: 104422 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104307 Number of HSP's gapped (non-prelim): 115 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)