>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 274

 Score =  149 bits (377), Expect = 1e-36
 Identities = 75/105 (71%), Positives = 86/105 (81%)
 Frame = -1

Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184
           PTGL K VI PGKGF+SA           FTK+NELFVGRLAQLGIAFSIIGEIIT KGA
Sbjct: 170 PTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGA 229

Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49
           L QLN  TGVPI+EIEPL+LFN+VFFF+AAINPGTGKF++ E+++
Sbjct: 230 LAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274



 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
 Frame = -1

Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94
           TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F  + A
Sbjct: 94  TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 153

Query: 93  IN--PGTGKFI 67
           I      GKFI
Sbjct: 154 IGALEDRGKFI 164

>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score =  146 bits (369), Expect = 1e-35
 Identities = 75/105 (71%), Positives = 83/105 (79%)
 Frame = -1

Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184
           PTGL K VI PGK F+SA           FTK+NELFVGRLAQLGIAFSIIGEIIT KGA
Sbjct: 172 PTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGA 231

Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49
           L QLN  TGVPI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D
Sbjct: 232 LAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276



 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
 Frame = -1

Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94
           TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F  + A
Sbjct: 96  TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 155

Query: 93  INP--GTGKFI 67
           I      GKF+
Sbjct: 156 IGALGDRGKFV 166

>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score =  144 bits (362), Expect = 7e-35
 Identities = 74/104 (71%), Positives = 82/104 (78%)
 Frame = -1

Query: 360 TGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGAL 181
           TGL K VI PGK F+SA           FTK+NELFVGRLAQLGIAFSIIGEIIT KGAL
Sbjct: 173 TGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232

Query: 180 XQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49
            QLN  TGVPI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D
Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276



 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = -1

Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94
           TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F  + A
Sbjct: 96  TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 155

Query: 93  INP--GTGKFISGEDDD*IGTGTRECFL 16
           I      G+FI   DD    TG  +  +
Sbjct: 156 IGALGDRGRFI---DDPAPATGLEKAVI 180

>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 274

 Score =  142 bits (357), Expect = 3e-34
 Identities = 75/104 (72%), Positives = 82/104 (78%)
 Frame = -1

Query: 360 TGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGAL 181
           TGL K VI PGK  RSA           FTKSNELFVGRLAQLG AFS+IGEIIT KGAL
Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGAL 229

Query: 180 XQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49
            QLNI TGVPI+EIEPLVL NVVFFFIAAINPGTGKFI+ ++++
Sbjct: 230 AQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273



 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
 Frame = -1

Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94
           TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F  + A
Sbjct: 95  TKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGA 154

Query: 93  INP--GTGKFI 67
           I      G+F+
Sbjct: 155 IGALGDRGRFV 165

>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 265

 Score =  137 bits (344), Expect = 8e-33
 Identities = 71/105 (67%), Positives = 79/105 (75%)
 Frame = -1

Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184
           PTGL K VI PGK  RSA           FTK+NELFVGRLAQLGIAFS+IGEIIT KGA
Sbjct: 160 PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGA 219

Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49
           L QLNI TG+PI +IEPLVL NV FFF AAINPG GKFI+ + ++
Sbjct: 220 LAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264



 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
 Frame = -1

Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94
           TK+NELFVGR+A +G A S++GE +T KG L QLN+ TG+PI E EPL+LF ++F  + A
Sbjct: 86  TKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGA 145

Query: 93  INP--GTGKFI 67
           I      GKF+
Sbjct: 146 IGALGDRGKFV 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,569,647
Number of Sequences: 219361
Number of extensions: 397307
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)