Clone Name | rbah62d08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast p... | 149 | 1e-36 | 2 | PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast p... | 146 | 1e-35 | 3 | PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast p... | 144 | 7e-35 | 4 | PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast p... | 142 | 3e-34 | 5 | PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast p... | 137 | 8e-33 |
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>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 149 bits (377), Expect = 1e-36 Identities = 75/105 (71%), Positives = 86/105 (81%) Frame = -1 Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184 PTGL K VI PGKGF+SA FTK+NELFVGRLAQLGIAFSIIGEIIT KGA Sbjct: 170 PTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGA 229 Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49 L QLN TGVPI+EIEPL+LFN+VFFF+AAINPGTGKF++ E+++ Sbjct: 230 LAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274 Score = 77.8 bits (190), Expect = 6e-15 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Frame = -1 Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94 TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F + A Sbjct: 94 TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 153 Query: 93 IN--PGTGKFI 67 I GKFI Sbjct: 154 IGALEDRGKFI 164
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 146 bits (369), Expect = 1e-35 Identities = 75/105 (71%), Positives = 83/105 (79%) Frame = -1 Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184 PTGL K VI PGK F+SA FTK+NELFVGRLAQLGIAFSIIGEIIT KGA Sbjct: 172 PTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGA 231 Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49 L QLN TGVPI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D Sbjct: 232 LAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Frame = -1 Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94 TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F + A Sbjct: 96 TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 155 Query: 93 INP--GTGKFI 67 I GKF+ Sbjct: 156 IGALGDRGKFV 166
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 144 bits (362), Expect = 7e-35 Identities = 74/104 (71%), Positives = 82/104 (78%) Frame = -1 Query: 360 TGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGAL 181 TGL K VI PGK F+SA FTK+NELFVGRLAQLGIAFSIIGEIIT KGAL Sbjct: 173 TGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232 Query: 180 XQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49 QLN TGVPI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 Score = 77.4 bits (189), Expect = 8e-15 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 2/88 (2%) Frame = -1 Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94 TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F + A Sbjct: 96 TKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGA 155 Query: 93 INP--GTGKFISGEDDD*IGTGTRECFL 16 I G+FI DD TG + + Sbjct: 156 IGALGDRGRFI---DDPAPATGLEKAVI 180
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 142 bits (357), Expect = 3e-34 Identities = 75/104 (72%), Positives = 82/104 (78%) Frame = -1 Query: 360 TGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGAL 181 TGL K VI PGK RSA FTKSNELFVGRLAQLG AFS+IGEIIT KGAL Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGAL 229 Query: 180 XQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49 QLNI TGVPI+EIEPLVL NVVFFFIAAINPGTGKFI+ ++++ Sbjct: 230 AQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273 Score = 75.5 bits (184), Expect = 3e-14 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Frame = -1 Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94 TK NELFVGR+A +G A S++GE IT KG L QLN+ TG+PI E EPL+LF ++F + A Sbjct: 95 TKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGA 154 Query: 93 INP--GTGKFI 67 I G+F+ Sbjct: 155 IGALGDRGRFV 165
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 137 bits (344), Expect = 8e-33 Identities = 71/105 (67%), Positives = 79/105 (75%) Frame = -1 Query: 363 PTGLXKXVIAPGKGFRSAXXXXXXXXXXXFTKSNELFVGRLAQLGIAFSIIGEIITXKGA 184 PTGL K VI PGK RSA FTK+NELFVGRLAQLGIAFS+IGEIIT KGA Sbjct: 160 PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGA 219 Query: 183 LXQLNIXTGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 49 L QLNI TG+PI +IEPLVL NV FFF AAINPG GKFI+ + ++ Sbjct: 220 LAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264 Score = 77.4 bits (189), Expect = 8e-15 Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 2/71 (2%) Frame = -1 Query: 273 TKSNELFVGRLAQLGIAFSIIGEIITXKGALXQLNIXTGVPISEIEPLVLFNVVFFFIAA 94 TK+NELFVGR+A +G A S++GE +T KG L QLN+ TG+PI E EPL+LF ++F + A Sbjct: 86 TKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGA 145 Query: 93 INP--GTGKFI 67 I GKF+ Sbjct: 146 IGALGDRGKFV 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,569,647 Number of Sequences: 219361 Number of extensions: 397307 Number of successful extensions: 758 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 746 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 758 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)