ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, m... 369 4e-99
2gb|AY104328.1| Zea mays PCO078649 mRNA sequence 369 4e-99
3ref|NM_190784.1| Oryza sativa (japonica cultivar-group), predic... 359 4e-96
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 359 4e-96
5dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 359 4e-96
6dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic D... 359 4e-96
7dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 4e-96
8dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 4e-96
9dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 4e-96
10ref|XM_474468.1| Oryza sativa (japonica cultivar-group), predic... 283 2e-73
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 283 2e-73
12dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 2e-73
13emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 283 2e-73
14emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 283 2e-73
15dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA... 268 1e-68
16dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
17gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
18gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
20gb|DQ067929.1| Xerophyta humilis PSII subunit PsbS mRNA, partial... 54 3e-04
21ref|NM_190839.1| Oryza sativa (japonica cultivar-group), predic... 44 0.31
22gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7... 44 0.31
23ref|NM_116941.1| Arabidopsis thaliana unknown protein AT4G08710 ... 42 1.2
24emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, comp... 42 1.2
25gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.2
26emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, ... 42 1.2
27emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, B... 42 1.2
28ref|NM_001027047.1| Caenorhabditis elegans F59B10.4a (F59B10.4) ... 42 1.2
29ref|NM_001027048.1| Caenorhabditis elegans F59B10.4b (F59B10.4) ... 42 1.2
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
32dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
33dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
35emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 42 1.2
36emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.2
37ref|NM_126075.4| Arabidopsis thaliana transcription factor AT5G6... 40 4.9
38gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.9
39gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.9
40gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.9
41gb|AY772449.1| Rhodococcus equi strain 103+ heat shock protein (... 40 4.9
42ref|XM_953430.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.9
43ref|XM_330473.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.9
44gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 4.9
45ref|XM_656577.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 4.9
46ref|XM_567952.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.9
47ref|XM_569485.1| Cryptococcus neoformans var. neoformans JEC21 t... 40 4.9
48gb|AF043697.2| Caenorhabditis elegans cosmid F56C11, complete se... 40 4.9
49ref|XM_790314.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.9
50gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 4.9
51emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.9
52emb|AJ318872.1|GGN318872 Gnetum gnemon partial mRNA for putative... 40 4.9
53gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 4.9
54gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map... 40 4.9
55gb|AY062538.1| Arabidopsis thaliana SCARECROW gene regulator (At... 40 4.9
56gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 4.9
57gb|AY150563.1| Aspergillus nidulans SipA3 gene, complete cds 40 4.9
58emb|BX830446.1|CNS0A04D Arabidopsis thaliana Full-length cDNA Co... 40 4.9
59emb|BX832347.1|CNS09ZLX Arabidopsis thaliana Full-length cDNA Co... 40 4.9
60gb|AC084645.1|CBRG45L11 Caenorhabditis briggsae cosmid G45L11, c... 40 4.9
61gb|AC084449.1|AC084449 Caenorhabditis briggsae cosmid CB021P23, ... 40 4.9
62gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.9
63gb|BT002580.1| Arabidopsis thaliana SCARECROW gene regulator (At... 40 4.9
64gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decar... 40 4.9
65dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.9
66emb|AJ519722.2|YEN519722 Yersinia enterocolitica partial cryptic... 40 4.9
67dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.9
68ref|XM_310477.2| Anopheles gambiae str. PEST ENSANGP00000019255 ... 40 4.9
69emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 4.9
70gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.9 
>gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, mRNA, complete cds;
           nuclear gene for chloroplast product
          Length = 1024

 Score =  369 bits (186), Expect = 4e-99
 Identities = 274/306 (89%)
 Strand = Plus / Minus

                                                                       
Query: 56  tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaagacg 115
           ||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||| |
Sbjct: 799 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 740

                                                                       
Query: 116 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagc 175
           ||||||||||  ||||||||||| |||||| ||||||||||||| |||| ||||||||||
Sbjct: 739 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 680

                                                                       
Query: 176 tgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatccccagc 235
           ||| |||||||||||||  ||||||||||||| ||||||||||||||||| |  ||||||
Sbjct: 679 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 620

                                                                       
Query: 236 tgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 295
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 560

                                                                       
Query: 296 tcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtngagg 355
           ||| ||| |||||||||   ||||||||| ||||||||   |||||||| ||||| ||||
Sbjct: 559 tcgctgaggccgagggcgccgcggaagcccttgccgggttggatgacggccttgtcgagg 500

                 
Query: 356 ccggtg 361
           ||||||
Sbjct: 499 ccggtg 494
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>gb|AY104328.1| Zea mays PCO078649 mRNA sequence
          Length = 1252

 Score =  369 bits (186), Expect = 4e-99
 Identities = 274/306 (89%)
 Strand = Plus / Minus

                                                                       
Query: 56  tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaagacg 115
           ||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||| |
Sbjct: 989 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 930

                                                                       
Query: 116 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagc 175
           ||||||||||  ||||||||||| |||||| ||||||||||||| |||| ||||||||||
Sbjct: 929 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 870

                                                                       
Query: 176 tgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatccccagc 235
           ||| |||||||||||||  ||||||||||||| ||||||||||||||||| |  ||||||
Sbjct: 869 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 810

                                                                       
Query: 236 tgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 295
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 809 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 750

                                                                       
Query: 296 tcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtngagg 355
           ||| ||| |||||||||   ||||||||| ||||||||   |||||||| ||||| ||||
Sbjct: 749 tcgctgaggccgagggcgccgcggaagcccttgccgggttggatgacggccttgtcgagg 690

                 
Query: 356 ccggtg 361
           ||||||
Sbjct: 689 ccggtg 684
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>ref|NM_190784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 807

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                       
Query: 53  tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
           ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 741

                                                                       
Query: 113 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
           |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 740 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 681

                                                                       
Query: 173 agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
           |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 680 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 621

                                                                       
Query: 233 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 620 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 561

                                                                       
Query: 293 ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
           |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 560 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 501

                
Query: 353 aggcc 357
           |||||
Sbjct: 500 aggcc 496
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                            
Query: 53       tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
                ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37692662 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 37692603

                                                                            
Query: 113      acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
                |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 37692602 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 37692543

                                                                            
Query: 173      agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
                |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 37692542 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 37692483

                                                                            
Query: 233      agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
                |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 37692482 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 37692423

                                                                            
Query: 293      ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
                |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 37692422 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 37692363

                     
Query: 353      aggcc 357
                |||||
Sbjct: 37692362 aggcc 37692358



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                            
Query: 119      ttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagctgc 178
                |||||||| | ||||||||||||||  |||||||| |  |||||||  ||||||||||||
Sbjct: 33384238 ttgaagaggatgagcggctcgatctaactgatggggatgccggtctcaatgttgagctgc 33384179

                               
Query: 179      nccagcgcgcccttg 193
                 |||| |||||||||
Sbjct: 33384178 cccagggcgcccttg 33384164
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                          
Query: 53     tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
              ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153136 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 153077

                                                                          
Query: 113    acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
              |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 153076 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 153017

                                                                          
Query: 173    agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
              |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 153016 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 152957

                                                                          
Query: 233    agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
              |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 152956 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 152897

                                                                          
Query: 293    ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
              |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 152896 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 152837

                   
Query: 353    aggcc 357
              |||||
Sbjct: 152836 aggcc 152832
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>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039A07
          Length = 148892

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                         
Query: 53    tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
             ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20963 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 20904

                                                                         
Query: 113   acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
             |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 20903 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 20844

                                                                         
Query: 173   agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
             |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 20843 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 20784

                                                                         
Query: 233   agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
             |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 20783 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 20724

                                                                         
Query: 293   ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
             |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 20723 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 20664

                  
Query: 353   aggcc 357
             |||||
Sbjct: 20663 aggcc 20659
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>dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B11, full
           insert sequence
          Length = 1055

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                       
Query: 53  tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
           ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826

                                                                       
Query: 113 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
           |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766

                                                                       
Query: 173 agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
           |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706

                                                                       
Query: 233 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646

                                                                       
Query: 293 ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
           |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 586

                
Query: 353 aggcc 357
           |||||
Sbjct: 585 aggcc 581
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>dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118A05, full
           insert sequence
          Length = 1057

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                       
Query: 53  tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
           ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 829

                                                                       
Query: 113 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
           |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 828 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 769

                                                                       
Query: 173 agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
           |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 768 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 709

                                                                       
Query: 233 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 708 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 649

                                                                       
Query: 293 ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
           |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 648 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 589

                
Query: 353 aggcc 357
           |||||
Sbjct: 588 aggcc 584
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>dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D09, full
           insert sequence
          Length = 1064

 Score =  359 bits (181), Expect = 4e-96
 Identities = 272/305 (89%)
 Strand = Plus / Minus

                                                                       
Query: 53  tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 112
           ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826

                                                                       
Query: 113 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttg 172
           |||||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766

                                                                       
Query: 173 agctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgatcccc 232
           |||||| | || ||||||||| | ||||||||||| |||||||||||||||||||| || 
Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706

                                                                       
Query: 233 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 292
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646

                                                                       
Query: 293 ccctcgntgangccgagggctgagcggaagcctttgccgggggcgatgacggncttgtng 352
           |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||| ||||| |
Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 586

                
Query: 353 aggcc 357
           |||||
Sbjct: 585 aggcc 581
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>ref|XM_474468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 747

 Score =  283 bits (143), Expect = 2e-73
 Identities = 225/254 (88%)
 Strand = Plus / Minus

                                                                       
Query: 49  gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 741 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 682

                                                                       
Query: 109 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
           ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 681 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 622

                                                                       
Query: 169 gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
           |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 621 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 562

                                                                       
Query: 229 ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
           |||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 561 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 502

                         
Query: 289 acctccctcgntga 302
            || |||||| |||
Sbjct: 501 gccaccctcgctga 488



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 248 cccacgaacagctcgttcgacttggtgaacccga 281
           ||||||||||||||||||  ||||||||||||||
Sbjct: 233 cccacgaacagctcgttctccttggtgaacccga 200
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  283 bits (143), Expect = 2e-73
 Identities = 225/254 (88%)
 Strand = Plus / Minus

                                                                            
Query: 49       gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
                ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 35373095 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 35373036

                                                                            
Query: 109      gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
                ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 35373035 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 35372976

                                                                            
Query: 169      gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
                |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 35372975 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 35372916

                                                                            
Query: 229      ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
                |||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 35372915 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 35372856

                              
Query: 289      acctccctcgntga 302
                 || |||||| |||
Sbjct: 35372855 gccaccctcgctga 35372842



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 248      cccacgaacagctcgttcgacttggtgaacccga 281
                ||||||||||||||||||  ||||||||||||||
Sbjct: 35372587 cccacgaacagctcgttctccttggtgaacccga 35372554
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>dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101I15, full
           insert sequence
          Length = 1116

 Score =  283 bits (143), Expect = 2e-73
 Identities = 225/254 (88%)
 Strand = Plus / Minus

                                                                       
Query: 49  gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 905 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 846

                                                                       
Query: 109 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
           ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 845 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 786

                                                                       
Query: 169 gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
           |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 785 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 726

                                                                       
Query: 229 ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
           |||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 725 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 666

                         
Query: 289 acctccctcgntga 302
            || |||||| |||
Sbjct: 665 gccaccctcgctga 652



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 248 cccacgaacagctcgttcgacttggtgaacccga 281
           ||||||||||||||||||  ||||||||||||||
Sbjct: 397 cccacgaacagctcgttctccttggtgaacccga 364
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>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
            sequence
          Length = 32686

 Score =  283 bits (143), Expect = 2e-73
 Identities = 225/254 (88%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
            ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 4925 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 4866

                                                                        
Query: 109  gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
            ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 4865 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 4806

                                                                        
Query: 169  gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
            |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 4805 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 4746

                                                                        
Query: 229  ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
            |||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 4745 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 4686

                          
Query: 289  acctccctcgntga 302
             || |||||| |||
Sbjct: 4685 gccaccctcgctga 4672



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 248  cccacgaacagctcgttcgacttggtgaacccga 281
            ||||||||||| ||||||  ||||||||||||||
Sbjct: 4417 cccacgaacagttcgttctccttggtgaacccga 4384
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
              complete sequence
          Length = 173770

 Score =  283 bits (143), Expect = 2e-73
 Identities = 225/254 (88%)
 Strand = Plus / Minus

                                                                          
Query: 49     gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
              ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 168939 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 168880

                                                                          
Query: 109    gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
              ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 168879 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 168820

                                                                          
Query: 169    gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
              |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 168819 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 168760

                                                                          
Query: 229    ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
              |||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 168759 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 168700

                            
Query: 289    acctccctcgntga 302
               || |||||| |||
Sbjct: 168699 gccaccctcgctga 168686



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 248    cccacgaacagctcgttcgacttggtgaacccga 281
              ||||||||||||||||||  ||||||||||||||
Sbjct: 168431 cccacgaacagctcgttctccttggtgaacccga 168398
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>dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA for 22 kDa
           protein of photosystem II precursor, complete cds
          Length = 1108

 Score =  268 bits (135), Expect = 1e-68
 Identities = 223/254 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 108
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 889 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 830

                                                                       
Query: 109 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngat 168
           ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||| |||
Sbjct: 829 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 770

                                                                       
Query: 169 gttgagctgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
           |||||||||| |||||||||||||  | ||||||||||| ||||||| ||||||||||||
Sbjct: 769 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 710

                                                                       
Query: 229 ccccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 288
           |||||  ||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 709 ccccacgtgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 650

                         
Query: 289 acctccctcgntga 302
            || |||||| |||
Sbjct: 649 gccaccctcgctga 636



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 248 cccacgaacagctcgttcgacttggtgaacccga 281
           ||||||||||||||||||  ||||||||||||||
Sbjct: 381 cccacgaacagctcgttctccttggtgaacccga 348
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415A04
          Length = 160669

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                         
Query: 119   ttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagctgc 178
             |||||||| | ||||||||||||||  |||||||| |  |||||||  ||||||||||||
Sbjct: 60404 ttgaagaggatgagcggctcgatctaactgatggggatgccggtctcaatgttgagctgc 60345

                            
Query: 179   nccagcgcgcccttg 193
              |||| |||||||||
Sbjct: 60344 cccagggcgcccttg 60330
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>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02,
              complete sequence
          Length = 156649

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                          
Query: 116    acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagc 175
              ||||||||||| ||||||| ||| |||||  ||| ||| |  | ||||| ||||||||||
Sbjct: 154598 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 154539

                                                                   
Query: 176    tgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
              |||   || ||  ||||| | |||| |||||| | ||||||||||||||||||
Sbjct: 154538 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 154486
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
             complete sequence
          Length = 145070

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                         
Query: 116   acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagc 175
             ||||||||||| ||||||| ||| |||||  ||| ||| |  | ||||| ||||||||||
Sbjct: 13474 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 13415

                                                                  
Query: 176   tgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
             |||   || ||  ||||| | |||| |||||| | ||||||||||||||||||
Sbjct: 13414 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 13362
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                           
Query: 116     acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctngatgttgagc 175
               ||||||||||| ||||||| ||| |||||  ||| ||| |  | ||||| ||||||||||
Sbjct: 4644131 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 4644072

                                                                    
Query: 176     tgcnccagcgcgcccttgnccgtgatgatctccccgatgatggagaaggcgat 228
               |||   || ||  ||||| | |||| |||||| | ||||||||||||||||||
Sbjct: 4644071 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 4644019
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>gb|DQ067929.1| Xerophyta humilis PSII subunit PsbS mRNA, partial cds; chloroplast
          Length = 479

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                       
Query: 134 ggctcgatctcgctgatgggcaccccggtctngatgttgagctgcnccagcgcgcccttg 193
           |||||||| |||||||||||||| || |||| |||||| | |||  |||  || ||||| 
Sbjct: 437 ggctcgatgtcgctgatgggcacgcctgtctcgatgtttaactgagccaaagcacccttc 378

                                                                       
Query: 194 nccgtgatgatctccccgatgatggagaaggcgatccccagctgcgccagccgncccacg 253
            | ||||||| ||| |||||||  ||||| || || || || ||||| || || ||||||
Sbjct: 377 ccggtgatgacctctccgatgagtgagaacgcaataccgagttgcgctagtcgtcccacg 318

                      
Query: 254 aacagctcgtt 264
           || ||||||||
Sbjct: 317 aagagctcgtt 307
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>ref|NM_190839.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1878

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 158  ccggtctngatgttgagctgcnccagcgcgcccttg 193
            |||||||  |||||||||||| |||| |||||||||
Sbjct: 1211 ccggtctcaatgttgagctgccccagggcgcccttg 1176
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>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 100   gatgaagaagaagacgacgttgaaga 125
             ||||||||||||| ||||||||||||
Sbjct: 10622 gatgaagaagaagtcgacgttgaaga 10597
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>ref|NM_116941.1| Arabidopsis thaliana unknown protein AT4G08710 mRNA, complete cds
          Length = 2148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 102  tgaagaagaagacgacgttga 122
            |||||||||||||||||||||
Sbjct: 1482 tgaagaagaagacgacgttga 1502
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>emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, complete sequence
          Length = 27428

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 90    tgatggcggcgatgaagaagaagacgacgttga 122
             |||||| ||||||||||||||||| || |||||
Sbjct: 14222 tgatggtggcgatgaagaagaagaagatgttga 14254
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 78      cggtgccggggttgatggcggcgatgaag 106
               |||||||| |||||||||||||| |||||
Sbjct: 2855847 cggtgccgcggttgatggcggcggtgaag 2855819
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>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24
          Length = 199362

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    tgaagaagaagacgacgttga 122
              |||||||||||||||||||||
Sbjct: 151365 tgaagaagaagacgacgttga 151385
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>emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A17 (ESSA project)
          Length = 104386

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tgaagaagaagacgacgttga 122
             |||||||||||||||||||||
Sbjct: 27093 tgaagaagaagacgacgttga 27113
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>ref|NM_001027047.1| Caenorhabditis elegans F59B10.4a (F59B10.4) mRNA, complete cds
          Length = 824

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 90  tgatggcggcgatgaagaagaagacgacgttga 122
           |||||| ||||||||||||||||| || |||||
Sbjct: 746 tgatggtggcgatgaagaagaagaagatgttga 714
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>ref|NM_001027048.1| Caenorhabditis elegans F59B10.4b (F59B10.4) mRNA, complete cds
          Length = 1033

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 90  tgatggcggcgatgaagaagaagacgacgttga 122
           |||||| ||||||||||||||||| || |||||
Sbjct: 680 tgatggtggcgatgaagaagaagaagatgttga 648
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 94      ggcggcgatgaagaagaagacgacg 118
               |||||||| ||||||||||||||||
Sbjct: 1088787 ggcggcgaagaagaagaagacgacg 1088763
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 94       ggcggcgatgaagaagaagacgacg 118
                |||||||| ||||||||||||||||
Sbjct: 24532739 ggcggcgaggaagaagaagacgacg 24532715
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0040H10
          Length = 173301

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    ggcggcgatgaagaagaagacgacg 118
             |||||||| ||||||||||||||||
Sbjct: 15932 ggcggcgaggaagaagaagacgacg 15908
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>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0012B02
          Length = 149807

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 94     ggcggcgatgaagaagaagacgacg 118
              |||||||| ||||||||||||||||
Sbjct: 144212 ggcggcgaggaagaagaagacgacg 144188
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 94      ggcggcgatgaagaagaagacgacg 118
               |||||||| ||||||||||||||||
Sbjct: 1088787 ggcggcgaagaagaagaagacgacg 1088763
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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    ggcggcgatgaagaagaagacgacg 118
             |||||||| ||||||||||||||||
Sbjct: 84059 ggcggcgaagaagaagaagacgacg 84035
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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    ggcggcgatgaagaagaagacgacg 118
             |||||||| ||||||||||||||||
Sbjct: 27770 ggcggcgaagaagaagaagacgacg 27746
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>ref|NM_126075.4| Arabidopsis thaliana transcription factor AT5G66770 mRNA, complete
           cds
          Length = 2295

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gatgaagaagaagacgacgt 119
           ||||||||||||||||||||
Sbjct: 965 gatgaagaagaagacgacgt 946
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    ggcgatccccagctgcgccagccg 246
              |||||| |||||||||||||||||
Sbjct: 415584 ggcgatgcccagctgcgccagccg 415607
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>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
             sequence
          Length = 906719

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   cgagggctgagcggaagcct 325
             ||||||||||||||||||||
Sbjct: 81539 cgagggctgagcggaagcct 81558
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     tggcggcgatgaagaagaagacga 116
              |||||||||||||||||| |||||
Sbjct: 607984 tggcggcgatgaagaagaggacga 607961
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>gb|AY772449.1| Rhodococcus equi strain 103+ heat shock protein (htrA) gene, complete
            cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   tgccggggttgatggcggcg 100
            ||||||||||||||||||||
Sbjct: 1151 tgccggggttgatggcggcg 1132
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>ref|XM_953430.1| Neurospora crassa OR74A hypothetical protein (NCU09824.1) partial
            mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   tggcggcgatgaagaagaagacga 116
            |||||||| |||||||||||||||
Sbjct: 1563 tggcggcggtgaagaagaagacga 1586
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>ref|XM_330473.1| Neurospora crassa OR74A hypothetical protein (NCU09824.1) partial
            mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   tggcggcgatgaagaagaagacga 116
            |||||||| |||||||||||||||
Sbjct: 1563 tggcggcggtgaagaagaagacga 1586
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 5243720 tgccggggttgatggcggcg 5243739



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 1734161 tgccggggttgatggcggcg 1734180
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>ref|XM_656577.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4065.2), mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  cgatgaagaagaagacgacg 118
           ||||||||||||||||||||
Sbjct: 222 cgatgaagaagaagacgacg 241
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>ref|XM_567952.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNL03940) partial mRNA
          Length = 1444

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 cgagggctgagcggaagcct 325
           ||||||||||||||||||||
Sbjct: 127 cgagggctgagcggaagcct 108
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>ref|XM_569485.1| Cryptococcus neoformans var. neoformans JEC21 translation
           initiation factor (CNC02150) partial mRNA
          Length = 1613

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  tggcggcgatgaagaagaagacga 116
           |||||||||||||||||| |||||
Sbjct: 976 tggcggcgatgaagaagaggacga 999
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>gb|AF043697.2| Caenorhabditis elegans cosmid F56C11, complete sequence
          Length = 41615

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tgaagaagaagacgacgttg 121
             ||||||||||||||||||||
Sbjct: 12860 tgaagaagaagacgacgttg 12841
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>ref|XM_790314.1| PREDICTED: Strongylocentrotus purpuratus similar to splicing factor
           3a, subunit 1 (LOC590717), partial mRNA
          Length = 1523

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  cgatgaagaagaagacgacg 118
           ||||||||||||||||||||
Sbjct: 948 cgatgaagaagaagacgacg 967
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     cgccgctgatgaacttgccggtgc 83
              |||||||| |||||||||||||||
Sbjct: 402332 cgccgctggtgaacttgccggtgc 402355
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 73     cttgccggtgccggggttgatggcggcg 100
              |||||||||| |||||||||||| ||||
Sbjct: 122050 cttgccggtggcggggttgatggaggcg 122077
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>emb|AJ318872.1|GGN318872 Gnetum gnemon partial mRNA for putative BEL1-like protein (melbel2
           gene)
          Length = 1295

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  cgatgaagaagaagacgacg 118
           ||||||||||||||||||||
Sbjct: 229 cgatgaagaagaagacgacg 248
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 4044198 tgccggggttgatggcggcg 4044179
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>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete
             sequence
          Length = 98432

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   gaagaagaagacgacgttga 122
             ||||||||||||||||||||
Sbjct: 52631 gaagaagaagacgacgttga 52612
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>gb|AY062538.1| Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1)
           mRNA, complete cds
          Length = 2225

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gatgaagaagaagacgacgt 119
           ||||||||||||||||||||
Sbjct: 961 gatgaagaagaagacgacgt 942
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 3453230 tgccggggttgatggcggcg 3453249
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>gb|AY150563.1| Aspergillus nidulans SipA3 gene, complete cds
          Length = 6209

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  cgatgaagaagaagacgacg 118
           ||||||||||||||||||||
Sbjct: 792 cgatgaagaagaagacgacg 773
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>emb|BX830446.1|CNS0A04D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB82ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1970

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gatgaagaagaagacgacgt 119
           ||||||||||||||||||||
Sbjct: 940 gatgaagaagaagacgacgt 921
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>emb|BX832347.1|CNS09ZLX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH66ZH07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1983

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gatgaagaagaagacgacgt 119
           ||||||||||||||||||||
Sbjct: 964 gatgaagaagaagacgacgt 945
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>gb|AC084645.1|CBRG45L11 Caenorhabditis briggsae cosmid G45L11, complete sequence
          Length = 41337

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ggcgatgaagaagaagacga 116
             ||||||||||||||||||||
Sbjct: 24698 ggcgatgaagaagaagacga 24717
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>gb|AC084449.1|AC084449 Caenorhabditis briggsae cosmid CB021P23, complete sequence
          Length = 90243

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 98    gcgatgaagaagaagacgacgttgaaga 125
             |||| |||||||||||||||| ||||||
Sbjct: 81483 gcgaagaagaagaagacgacgatgaaga 81456
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 2030031 tgccggggttgatggcggcg 2030050
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>gb|BT002580.1| Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA,
           complete cds
          Length = 2019

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gatgaagaagaagacgacgt 119
           ||||||||||||||||||||
Sbjct: 809 gatgaagaagaagacgacgt 790
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>gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decarboxylase-like protein,
             cysteine dioxygenase-like protein, putative histidine
             protein kinase (hpkA), putative serine/threonine protein
             kinase (pknD1), putative histidine protein kinase (espA),
             putative membrane protein (espB), putative
             serine/threonine protein kinase (pknD2), putative serine
             protease DO-like precursor (htrA), and putative response
             regulator genes, complete cds; and unknown genes
          Length = 18424

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tgccggggttgatggcggcg 100
             ||||||||||||||||||||
Sbjct: 16398 tgccggggttgatggcggcg 16417
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tgccggggttgatggcggcg 100
               ||||||||||||||||||||
Sbjct: 1258181 tgccggggttgatggcggcg 1258200
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>emb|AJ519722.2|YEN519722 Yersinia enterocolitica partial cryptic plasmid p29930
          Length = 40303

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tgccggggttgatggcggcg 100
             ||||||||||||||||||||
Sbjct: 37562 tgccggggttgatggcggcg 37581
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>dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21
          Length = 69850

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  gatgaagaagaagacgacgt 119
            ||||||||||||||||||||
Sbjct: 4042 gatgaagaagaagacgacgt 4023
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>ref|XM_310477.2| Anopheles gambiae str. PEST ENSANGP00000019255
           (ENSANGG00000016766), partial mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 gcggctcgatctcgctgatg 151
           ||||||||||||||||||||
Sbjct: 301 gcggctcgatctcgctgatg 282
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      ggcgatgaagaagaagacga 116
               ||||||||||||||||||||
Sbjct: 1544717 ggcgatgaagaagaagacga 1544736



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     gcgcgtgccggtgccgatct 47
              ||||||||||||||||||||
Sbjct: 452195 gcgcgtgccggtgccgatct 452176
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tgccggggttgatggcggcg 100
              ||||||||||||||||||||
Sbjct: 935443 tgccggggttgatggcggcg 935462


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,656,324
Number of Sequences: 3902068
Number of extensions: 2656324
Number of successful extensions: 51740
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50822
Number of HSP's gapped (non-prelim): 909
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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