ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62d07 |
|---|---|
| Clone Library Name | barley_pub |
>PNPP_YEAST (P19881) 4-nitrophenylphosphatase (EC 3.1.3.41) (PNPPase)| Length = 312 Score = 46.6 bits (109), Expect = 2e-05 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Frame = -1 Query: 331 CMVGXRLDTDVLFGQNGGC-KTLLVLSGV-TSVQMLQSPDNTIQPDFYTNQISDFLTL 164 CMVG RL+TD+ FG GG TLLVLSG+ T + L+ + +P FY +++ D TL Sbjct: 250 CMVGDRLNTDMKFGVEGGLGGTLLVLSGIETEERALKISHDYPRPKFYIDKLGDIYTL 307
>PLPP_RAT (Q8VD52) Pyridoxal phosphate phosphatase (EC 3.1.3.74) (PLP| phosphatase) (Reg I binding protein 1) Length = 309 Score = 45.1 bits (105), Expect = 4e-05 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Frame = -1 Query: 337 QICMVGXRLDTDVLFGQNGGCKTLLVLSGVTSVQ----MLQSPDNTIQPDFYTNQISDFL 170 ++ MVG RL+TD+LFG G T+L L+GV+S++ L + + + P +Y I+D + Sbjct: 228 RMLMVGDRLETDILFGHRCGMTTVLTLTGVSSLEEAQAYLAAGQHDLVPHYYVESIADLM 287
>PLPP_MOUSE (P60487) Pyridoxal phosphate phosphatase (EC 3.1.3.74) (PLP| phosphatase) Length = 292 Score = 44.3 bits (103), Expect = 8e-05 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Frame = -1 Query: 328 MVGXRLDTDVLFGQNGGCKTLLVLSGVTSVQ----MLQSPDNTIQPDFYTNQISDFL 170 MVG RL+TD+LFG G T+L L+GV+S++ L + + P +Y I+D + Sbjct: 231 MVGDRLETDILFGHRCGMTTVLTLTGVSSLEEAQAYLTAGQRDLVPHYYVESIADLM 287
>PLPP_HUMAN (Q96GD0) Pyridoxal phosphate phosphatase (EC 3.1.3.74) (PLP| phosphatase) Length = 296 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = -1 Query: 328 MVGXRLDTDVLFGQNGGCKTLLVLSGVTSVQ----MLQSPDNTIQPDFYTNQISD 176 MVG RL+TD+LFG G T+L L+GV+ ++ L + + + P +Y I+D Sbjct: 235 MVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIAD 289
>PNPP_SCHPO (Q00472) 4-nitrophenylphosphatase (EC 3.1.3.41) (PNPPase)| Length = 298 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -1 Query: 331 CMVGXRLDTDVLFGQNGGCK-TLLVLSGVTSVQMLQSPDNTIQPDFYTNQIS 179 C VG RL+TD+ F +N +LLVL+GV+ + + D + PD+Y ++ Sbjct: 241 CFVGDRLNTDIQFAKNSNLGGSLLVLTGVSKEEEILEKDAPVVPDYYVESLA 292
>NAGD_ECOLI (P0AF24) Protein nagD| Length = 250 Score = 35.0 bits (79), Expect = 0.046 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = -1 Query: 328 MVGXRLDTDVLFGQNGGCKTLLVLSGVTSVQMLQS 224 +VG L TD+L G G +T+LVLSGV+S+ + S Sbjct: 198 IVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDS 232
>NAGD_ECO57 (P0AF25) Protein nagD| Length = 250 Score = 35.0 bits (79), Expect = 0.046 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = -1 Query: 328 MVGXRLDTDVLFGQNGGCKTLLVLSGVTSVQMLQS 224 +VG L TD+L G G +T+LVLSGV+S+ + S Sbjct: 198 IVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDS 232
>HIRA_CHICK (P79987) HIRA protein (TUP1-like enhancer of split protein 1)| (CHIRA) Length = 1018 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 143 CSYCCCFKGEKIRNLVCVEIWLDRVVGALKHLH 241 C YCCC G K R+L +WL + L +H Sbjct: 295 CPYCCCAVGSKDRSL---SVWLTSLKRPLVVIH 324
>HIRA_FUGRU (O42611) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1025 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 143 CSYCCCFKGEKIRNLVCVEIWLDRVVGALKHLH 241 C YCCC G K R+L +WL + L +H Sbjct: 295 CPYCCCAVGSKDRSL---SVWLTSLKRPLVVIH 324
>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1842 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 296 IWAKWRLQNSPGSFRC 249 I WR +NSPGS+RC Sbjct: 1262 ICGAWRCENSPGSYRC 1277
>PPAX_BACSU (Q9JMQ2) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = -1 Query: 304 DVLFGQNGGCKTLLVLSGVTSVQMLQSPDNTIQPDFYTNQISDFLTL 164 DVL G+N G KT V + +ML +PDF ++SD L + Sbjct: 170 DVLAGKNAGTKTAGVAWTIKGPEMLAKH----EPDFMLEKMSDLLQI 212
>HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1017 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 143 CSYCCCFKGEKIRNLVCVEIWLDRVVGALKHLH 241 C YCCC G K R+L +WL + L +H Sbjct: 295 CPYCCCAVGSKDRSL---SVWLTCLKRPLVVIH 324
>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1813 Score = 28.1 bits (61), Expect = 5.7 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -3 Query: 284 WRLQNSPGSFRC 249 WR +NSPGS+RC Sbjct: 1266 WRCENSPGSYRC 1277
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 143 CSYCCCFKGEKIRNLVCVEIWLDRVVGALKHLH 241 C YCCC G K R+L +WL + L +H Sbjct: 295 CPYCCCAVGSKDRSL---SVWLTCLKRPLVVIH 324
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 172 ENQKFGLCRNLAGSCCRGSEASAQKSHLKEPGEFCSLHFAQI 297 E++ L N G CC G AQ H + CS H+A+I Sbjct: 3199 EDKYIALSPNATGVCCGGRMWEAQPDH-----QCCSGHYARI 3235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,141,463 Number of Sequences: 219361 Number of extensions: 915482 Number of successful extensions: 2302 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2301 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
