ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 307 1e-80
2gb|AY104294.1| Zea mays PCO116917 mRNA sequence 52 0.001
3emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.020
4gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.31
5ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 44 0.31
6gb|AY273166.1| Homo sapiens polymerase (DNA directed), epsilon (... 44 0.31
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
8gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Can... 44 0.31
9emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.31
10emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 44 0.31
11gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 44 0.31
12dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 44 0.31
13dbj|AK081831.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.2
14emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on ch... 42 1.2
15gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 42 1.2
16gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 4.8
17gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 4.8
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.8
19gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 4.8
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 4.8
21emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 4.8
22gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 4.8
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
24gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 4.8
25gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 4.8
26emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 4.8 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  307 bits (155), Expect = 1e-80
 Identities = 316/361 (87%), Gaps = 11/361 (3%)
 Strand = Plus / Minus

                                                                        
Query: 6    tatgaacacgtgttaataggcacaacaatgtagtatg-tatgtactcctattacagtggc 64
            |||||||||||||||||||||||||||||||| | |  || ||||   ||||||||||||
Sbjct: 1367 tatgaacacgtgttaataggcacaacaatgtactgtactaggtacaa-tattacagtggc 1309

                                                                        
Query: 65   aacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-catcgaactgcga 122
            ||||||||||| |||||||||| |||||||||||||| |||||||  | | ||||||| |
Sbjct: 1308 aacagctaaaaattgcctaccc-tattgtacaccctcggttctttttcgtagaactgcaa 1250

                                                                        
Query: 123  cgtagtaactctgtcagaagctattcaaaaccctgttctggcatatcttgatgagtacaa 182
            |||||||| |||||||||||||| |||||| |||| | ||| |||||| ||||||| |||
Sbjct: 1249 cgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatctggatgagtgcaa 1191

                                                                        
Query: 183  aaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnnnactgaagaatg 242
            || ||||||||| |||||||  |  |||||||||||||||||       |||||||||||
Sbjct: 1190 aagttacaattctttttctttcca-tgatgcagtgtcggctgttt----actgaagaatg 1136

                                                                        
Query: 243  ctgtacagtggctggtgacaaggggtggctgaagtccccactcatgctgcctgcagaact 302
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1135 ctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgctgcctgcagaact 1076

                                                                        
Query: 303  tctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttcacccggaacatg 362
            |||||||| |||||||| |||||||| || |||| ||| |||||||||||||||||||||
Sbjct: 1075 tctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttcacccggaacatg 1016

             
Query: 363  g 363
            |
Sbjct: 1015 g 1015
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>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 324 tcgtatgggagcgcgctgagcaccttcacccggaacat 361
           ||||||||||||| | | ||||||||||||||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacat 877
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 167    atcttgatgagtacaaaaattacaattc 194
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
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>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    aaaaattacaattccttttctt 202
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
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>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 327  tatgggagcgcgctgagcaccttcacccggaaca 360
            |||||||||| ||| ||||||||||| |||||||
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaaca 1883
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>gb|AY273166.1| Homo sapiens polymerase (DNA directed), epsilon (POLE1) gene, partial
             cds
          Length = 58992

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 239   aatgctgtacagtggctggtga 260
             ||||||||||||||||||||||
Sbjct: 19805 aatgctgtacagtggctggtga 19784
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 62       ggcaacagctaaaattgcctacccctattg 91
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 327      tatgggagcgcgctgagcaccttcacccggaaca 360
                |||||||||| ||| ||||||||||| |||||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaaca 22351015
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>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160039

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 239    aatgctgtacagtggctggtga 260
              ||||||||||||||||||||||
Sbjct: 146300 aatgctgtacagtggctggtga 146321
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>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    aaaaattacaattccttttctt 202
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 62     ggcaacagctaaaattgcctacccctattg 91
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 327    tatgggagcgcgctgagcaccttcacccggaaca 360
              |||||||||| ||| ||||||||||| |||||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaaca 101919
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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 27    acaacaatgtagtatgtatgta 48
             ||||||||||||||||||||||
Sbjct: 33467 acaacaatgtagtatgtatgta 33488
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>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 327  tatgggagcgcgctgagcaccttcacccggaaca 360
            |||||||||| ||| ||||||||||| |||||||
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaaca 2076
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>dbj|AK081831.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130080K17 product:hypothetical protein,
           full insert sequence
          Length = 1228

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 actgaagaatgctgtacagtg 252
           |||||||||||||||||||||
Sbjct: 378 actgaagaatgctgtacagtg 398
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>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
              sequence
          Length = 180092

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    actgaagaatgctgtacagtg 252
              |||||||||||||||||||||
Sbjct: 173729 actgaagaatgctgtacagtg 173709
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   gtacagtggctggtgacaagg 265
             |||||||||||||||||||||
Sbjct: 63652 gtacagtggctggtgacaagg 63632
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 167    atcttgatgagtacaaaaattacaattc 194
              ||||||||||||| |||||| |||||||
Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     tcttgatgagtacaaaaatt 187
               ||||||||||||||||||||
Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      aaattacaattccttttctt 202
                ||||||||||||||||||||
Sbjct: 34148352 aaattacaattccttttctt 34148371
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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tacccctattgtacaccctc 100
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ccttttcttggcggtgatgc 213
               ||||||||||||||||||||
Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     tcttgatgagtacaaaaatt 187
               ||||||||||||||||||||
Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tgtacaccctcagttctttc 109
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      aaattacaattccttttctt 202
                ||||||||||||||||||||
Sbjct: 34238824 aaattacaattccttttctt 34238843
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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   tcagaagctattcaaaaccctgtt 159
             ||||||||||||||||| ||||||
Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    aaattacaattccttttctt 202
              ||||||||||||||||||||
Sbjct: 112164 aaattacaattccttttctt 112183
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   tgagtacaaaaattacaattcctt 197
             |||||||||||||| |||||||||
Sbjct: 69405 tgagtacaaaaattccaattcctt 69382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,535,349
Number of Sequences: 3902068
Number of extensions: 3535349
Number of successful extensions: 55370
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55215
Number of HSP's gapped (non-prelim): 151
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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