Clone Name | rbah61o05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds Length = 1411 Score = 218 bits (110), Expect = 8e-54 Identities = 230/265 (86%), Gaps = 9/265 (3%) Strand = Plus / Minus Query: 35 tattacagtggcaacagctaaaa-ttgcctacccctattgtncaccctcagttctttc-c 92 ||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||| | Sbjct: 1320 tattacagtggcaacagctaaaaattgcctaccc-tattgtacaccctcggttctttttc 1262 Query: 93 atcgaactgcgacgtagnaactctgtcagaagctattcaaaaccctgttctggcatatct 152 | ||||||| |||||| || |||||||||||||| |||||| |||| | ||| |||||| Sbjct: 1261 gtagaactgcaacgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatct 1203 Query: 153 tgatgagtacaaaaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnn 212 ||||||| ||||| ||||||||| ||||||| | ||||||||||||||||| Sbjct: 1202 ggatgagtgcaaaagttacaattctttttctttcca-tgatgcagtgtcggctgttt--- 1147 Query: 213 nactgaagaatgctgtacagtggctggtgacaaggggtggctgaagtccccactcatgct 272 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 1146 -actgaagaatgctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgct 1088 Query: 273 gcctgcagaacttctnccccgcctc 297 ||||||||||||||| |||| |||| Sbjct: 1087 gcctgcagaacttctccccctcctc 1063
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 48.1 bits (24), Expect = 0.016 Identities = 27/28 (96%) Strand = Plus / Plus Query: 149 atcttgatgagtacaaaaattacaattc 176 |||||||||||||||||||| ||||||| Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence Length = 162962 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaaaattacaattccttttctt 184 |||||||||||||||||||||| Sbjct: 132787 aaaaattacaattccttttctt 132766
>gb|AY273166.1| Homo sapiens polymerase (DNA directed), epsilon (POLE1) gene, partial cds Length = 58992 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 221 aatgctgtacagtggctggtga 242 |||||||||||||||||||||| Sbjct: 19805 aatgctgtacagtggctggtga 19784
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 44 ggcaacagctaaaattgcctacccctattg 73 |||||||||||||||||||| |||||||| Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human BAC Library) complete sequence Length = 160039 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 aatgctgtacagtggctggtga 242 |||||||||||||||||||||| Sbjct: 146300 aatgctgtacagtggctggtga 146321
>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete sequence Length = 178159 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaaaattacaattccttttctt 184 |||||||||||||||||||||| Sbjct: 128657 aaaaattacaattccttttctt 128636
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 44 ggcaacagctaaaattgcctacccctattg 73 |||||||||||||||||||| |||||||| Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
>dbj|AK081831.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130080K17 product:hypothetical protein, full insert sequence Length = 1228 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 actgaagaatgctgtacagtg 234 ||||||||||||||||||||| Sbjct: 378 actgaagaatgctgtacagtg 398
>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete sequence Length = 180092 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 actgaagaatgctgtacagtg 234 ||||||||||||||||||||| Sbjct: 173729 actgaagaatgctgtacagtg 173709
>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence Length = 166104 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 caacaatgtagtatgtatgta 30 ||||||||||||||||||||| Sbjct: 33468 caacaatgtagtatgtatgta 33488
>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence Length = 182101 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gtacagtggctggtgacaagg 247 ||||||||||||||||||||| Sbjct: 63652 gtacagtggctggtgacaagg 63632
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 atcttgatgagtacaaaaattacaattc 176 ||||||||||||| |||||| ||||||| Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tcttgatgagtacaaaaatt 169 |||||||||||||||||||| Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aaattacaattccttttctt 184 |||||||||||||||||||| Sbjct: 34148352 aaattacaattccttttctt 34148371
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ccttttcttggcggtgatgc 195 |||||||||||||||||||| Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tcttgatgagtacaaaaatt 169 |||||||||||||||||||| Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aaattacaattccttttctt 184 |||||||||||||||||||| Sbjct: 34238824 aaattacaattccttttctt 34238843
>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence Length = 166669 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 tcagaagctattcaaaaccctgtt 141 ||||||||||||||||| |||||| Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aaattacaattccttttctt 184 |||||||||||||||||||| Sbjct: 112164 aaattacaattccttttctt 112183
>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete sequence Length = 208695 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 tgagtacaaaaattacaattcctt 179 |||||||||||||| ||||||||| Sbjct: 69405 tgagtacaaaaattccaattcctt 69382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,067,283 Number of Sequences: 3902068 Number of extensions: 3067283 Number of successful extensions: 45922 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45807 Number of HSP's gapped (non-prelim): 112 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)